debspawn 0.6.5 on estragon at 2024-05-12 16:30:42 UTC-0400
dpkg-source: info: extracting openstructure in openstructure-2.5.0
dpkg-source: info: unpacking openstructure_2.5.0.orig.tar.xz
dpkg-source: info: unpacking openstructure_2.5.0-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying python-dist-packages.patch
dpkg-source: info: applying fix-quotes-in-ENV.patch
dpkg-source: info: applying skip-network-tests.patch
dpkg-source: info: applying add-python3-shebangs.patch
dpkg-source: info: applying ost_config.patch
dpkg-source: info: applying skip-dssp-tests.patch

╔═══════════════════════╗
║  Package build        ║
╚═══════════════════════╝
Package: openstructure
Version: 2.5.0-2
Distribution: landing
Architecture: arm64

Free space in workspace: 179.1GiB

┌───────────────────────────────────────┐
│  Preparing container for build        │
└───────────────────────────────────────┘
Get:1 https://repo.pureos.net/pureos landing InRelease [9625 B]
Get:2 https://repo.pureos.net/pureos landing/main arm64 Packages [4442 kB]
Get:3 https://repo.pureos.net/pureos landing/main all Packages [3803 kB]
Fetched 8255 kB in 5s (1670 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be REMOVED:
  libapt-pkg6.0 libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libgnutls30
  libhogweed6 libnettle8 libssl3 libtirpc3
The following NEW packages will be installed:
  cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu g++-13
  g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-13
  gcc-13-aarch64-linux-gnu gcc-13-base gcc-14-base gcc-aarch64-linux-gnu
  libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgcc-13-dev libgdbm-compat4t64
  libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libperl5.38t64
  libsframe1 libssl3t64 libstdc++-13-dev libtirpc3t64 libunistring5
  perl-modules-5.38
The following packages will be upgraded:
  adduser apt base-passwd bash binutils binutils-aarch64-linux-gnu
  binutils-common bsdutils build-essential bzip2 ca-certificates coreutils cpp
  cpp-12 dash debconf debian-archive-keyring debianutils diffutils e2fsprogs
  eatmydata fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpgv grep
  gzip hostname init-system-helpers libacl1 libasan8 libatomic1 libattr1
  libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin
  libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2
  libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libeatmydata1
  libexpat1 libfakeroot libffi8 libgcc-12-dev libgcc-s1 libgcrypt20 libgmp10
  libgomp1 libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0
  libisl23 libitm1 libjansson4 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6
  libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin
  libpam-runtime libpam0g libpcre2-8-0 libpython3.11-minimal libseccomp2
  libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libss2
  libstdc++-12-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common
  libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1
  linux-libc-dev login logsave mawk mount ncurses-base ncurses-bin openssl
  passwd perl perl-base python3-minimal python3.11-minimal sed sysvinit-utils
  tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g
134 upgraded, 27 newly installed, 10 to remove and 0 not upgraded.
Need to get 0 B/143 MB of archives.
After this operation, 235 MB of additional disk space will be used.
debconf: delaying package configuration, since apt-utils is not installed
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dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
 libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).

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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested:
 libperl5.36:arm64 depends on libdb5.3.
 libpam-modules:arm64 depends on libdb5.3.

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Setting up libpam-modules:arm64 (1.5.3-7) ...
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dpkg: libgdbm-compat4:arm64: dependency problems, but removing anyway as you requested:
 libperl5.36:arm64 depends on libgdbm-compat4 (>= 1.18-3).

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Removing libgdbm-compat4:arm64 (1.23-3) ...
dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested:
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dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2')
dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat')
dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2')
dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat')
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Setting up libsmartcols1:arm64 (2.40-8) ...
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Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra'
Adding 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra'
Adding 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra'
Adding 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra'
Adding 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra'
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dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty
dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty
dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty
Setting up util-linux-extra (2.40-8) ...
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dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested:
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dpkg: libext2fs2:arm64: dependency problems, but removing anyway as you requested:
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Adding 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2 to /lib/aarch64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2.3 to /lib/aarch64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2 to /lib/aarch64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2.4 to /lib/aarch64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
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Setting up libkeyutils1:arm64 (1.6.3-3) ...
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Setting up binutils-common:arm64 (2.42-4) ...
Installing new version of config file /etc/gprofng.rc ...
Setting up linux-libc-dev (6.7.12-1) ...
Setting up libctf-nobfd0:arm64 (2.42-4) ...
Setting up libgomp1:arm64 (14-20240330-1) ...
Setting up bzip2 (1.0.8-5.1) ...
Setting up libsframe1:arm64 (2.42-4) ...
Setting up libfakeroot:arm64 (1.33-1) ...
Setting up libjansson4:arm64 (2.14-2+b2) ...
Setting up libkrb5support0:arm64 (1.20.1-6+b1) ...
Setting up gcc-12-base:arm64 (12.3.0-17) ...
Setting up tzdata (2024a-4) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Sun May 12 20:32:03 UTC 2024.
Universal Time is now:  Sun May 12 20:32:03 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up fakeroot (1.33-1) ...
Setting up gcc-13-base:arm64 (13.2.0-24) ...
Setting up libmpfr6:arm64 (4.2.1-1+b1) ...
Setting up xz-utils (5.6.1+really5.4.5-1) ...
Setting up libmpc3:arm64 (1.3.1-1+b2) ...
Setting up libatomic1:arm64 (14-20240330-1) ...
Setting up libss2:arm64 (1.47.1~rc2-1) ...
Setting up libk5crypto3:arm64 (1.20.1-6+b1) ...
Setting up logsave (1.47.1~rc2-1) ...
Setting up libubsan1:arm64 (14-20240330-1) ...
Setting up mount (2.40-8) ...
Setting up libhwasan0:arm64 (14-20240330-1) ...
Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
Setting up libasan8:arm64 (14-20240330-1) ...
Setting up libeatmydata1:arm64 (131-2) ...
Setting up python3-minimal (3.11.8-1) ...
Setting up mawk (1.3.4.20240123-1) ...
Setting up libkrb5-3:arm64 (1.20.1-6+b1) ...
Setting up libtsan2:arm64 (14-20240330-1) ...
Setting up libbinutils:arm64 (2.42-4) ...
Setting up libisl23:arm64 (0.26-3+b2) ...
Setting up libc-dev-bin (2.38-10) ...
Setting up openssl (3.2.1-3) ...
Installing new version of config file /etc/ssl/openssl.cnf ...
Setting up libcc1-0:arm64 (14-20240330-1) ...
Setting up liblsan0:arm64 (14-20240330-1) ...
Setting up libitm1:arm64 (14-20240330-1) ...
Setting up libctf0:arm64 (2.42-4) ...
Setting up eatmydata (131-2) ...
Setting up cpp-12 (12.3.0-17) ...
Setting up cpp-13-aarch64-linux-gnu (13.2.0-24) ...
Setting up e2fsprogs (1.47.1~rc2-1) ...
Installing new version of config file /etc/cron.d/e2scrub_all ...
Installing new version of config file /etc/mke2fs.conf ...
Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL
14 added, 8 removed; done.
Setting up cpp-aarch64-linux-gnu (4:13.2.0-7) ...
Setting up libgprofng0:arm64 (2.42-4) ...
Setting up libgcc-12-dev:arm64 (12.3.0-17) ...
Setting up libgssapi-krb5-2:arm64 (1.20.1-6+b1) ...
Setting up libgcc-13-dev:arm64 (13.2.0-24) ...
Setting up libc6-dev:arm64 (2.38-10) ...
Setting up libstdc++-13-dev:arm64 (13.2.0-24) ...
Setting up cpp-13 (13.2.0-24) ...
Setting up libstdc++-12-dev:arm64 (12.3.0-17) ...
Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ...
Setting up binutils-aarch64-linux-gnu (2.42-4) ...
Setting up binutils (2.42-4) ...
Setting up gcc-13-aarch64-linux-gnu (13.2.0-24) ...
Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
Setting up gcc-12 (12.3.0-17) ...
Setting up gcc-13 (13.2.0-24) ...
Setting up cpp (4:13.2.0-7) ...
Setting up libnsl2:arm64 (1.3.0-3+b2) ...
Setting up g++-12 (12.3.0-17) ...
Setting up g++-13-aarch64-linux-gnu (13.2.0-24) ...
Setting up gcc-aarch64-linux-gnu (4:13.2.0-7) ...
Setting up g++-13 (13.2.0-24) ...
Setting up gcc (4:13.2.0-7) ...
Setting up libnsl-dev:arm64 (1.3.0-3+b2) ...
Setting up g++-aarch64-linux-gnu (4:13.2.0-7) ...
Setting up g++ (4:13.2.0-7) ...
Setting up build-essential (12.10) ...
Processing triggers for libc-bin (2.38-10) ...
Processing triggers for debianutils (5.17) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
build-essential is already the newest version (12.10).
dpkg-dev is already the newest version (1.21.22pureos1).
fakeroot is already the newest version (1.33-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

┌───────────────────────────────────────────────┐
│  Installing package build-dependencies        │
└───────────────────────────────────────────────┘
Note, using directory './' to get the build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev blt bsdextrautils clustalw cmake
  cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dssp
  dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
  fonts-lyx gettext gettext-base gfortran-13 gfortran-13-aarch64-linux-gnu
  groff-base ibverbs-providers icu-devtools intltool-debian libamd-comgr2
  libamdhip64-5 libarchive-zip-perl libarchive13t64 libavahi-client3
  libavahi-common-data libavahi-common3 libblas3 libboost-all-dev
  libboost-atomic-dev libboost-atomic1.83-dev libboost-atomic1.83.0
  libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64
  libboost-container-dev libboost-container1.83-dev libboost-container1.83.0
  libboost-context-dev libboost-context1.83-dev libboost-context1.83.0
  libboost-coroutine-dev libboost-coroutine1.83-dev libboost-coroutine1.83.0
  libboost-date-time-dev libboost-date-time1.83-dev libboost-date-time1.83.0
  libboost-dev libboost-exception-dev libboost-exception1.83-dev
  libboost-fiber-dev libboost-fiber1.83-dev libboost-fiber1.83.0
  libboost-filesystem-dev libboost-filesystem1.83-dev
  libboost-filesystem1.83.0 libboost-graph-dev libboost-graph-parallel-dev
  libboost-graph-parallel1.83-dev libboost-graph-parallel1.83.0
  libboost-graph1.83-dev libboost-graph1.83.0 libboost-iostreams-dev
  libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-json-dev
  libboost-json1.83-dev libboost-json1.83.0 libboost-locale-dev
  libboost-locale1.83-dev libboost-locale1.83.0 libboost-log-dev
  libboost-log1.83-dev libboost-log1.83.0 libboost-math-dev
  libboost-math1.83-dev libboost-math1.83.0 libboost-mpi-dev
  libboost-mpi-python-dev libboost-mpi-python1.83-dev
  libboost-mpi-python1.83.0 libboost-mpi1.83-dev libboost-mpi1.83.0
  libboost-nowide-dev libboost-nowide1.83-dev libboost-nowide1.83.0
  libboost-numpy-dev libboost-numpy1.83-dev libboost-numpy1.83.0
  libboost-program-options-dev libboost-program-options1.83-dev
  libboost-program-options1.83.0 libboost-python-dev libboost-python1.83-dev
  libboost-python1.83.0 libboost-random-dev libboost-random1.83-dev
  libboost-random1.83.0 libboost-regex-dev libboost-regex1.83-dev
  libboost-regex1.83.0 libboost-serialization-dev
  libboost-serialization1.83-dev libboost-serialization1.83.0
  libboost-stacktrace-dev libboost-stacktrace1.83-dev
  libboost-stacktrace1.83.0 libboost-system-dev libboost-system1.83-dev
  libboost-system1.83.0 libboost-test-dev libboost-test1.83-dev
  libboost-test1.83.0 libboost-thread-dev libboost-thread1.83-dev
  libboost-thread1.83.0 libboost-timer-dev libboost-timer1.83-dev
  libboost-timer1.83.0 libboost-tools-dev libboost-type-erasure-dev
  libboost-type-erasure1.83-dev libboost-type-erasure1.83.0 libboost-url-dev
  libboost-url1.83-dev libboost-url1.83.0 libboost-wave-dev
  libboost-wave1.83-dev libboost-wave1.83.0 libboost1.83-dev
  libboost1.83-tools-dev libbrotli1 libbsd0 libcbor0.10 libcifpp-data
  libcifpp5 libcups2t64 libcurl4t64 libdbus-1-3 libdebhelper-perl
  libdeflate-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1
  libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev
  libegl-mesa0 libegl1 libeigen3-dev libelf1t64 libevdev2 libevent-2.1-7t64
  libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64
  libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1-dev
  libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3
  libfftw3-single3 libfido2-1 libfile-stripnondeterminism-perl libfontconfig1
  libfreetype6 libfribidi0 libgbm1 libgfortran-13-dev libgfortran5 libgl-dev
  libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglu1-mesa
  libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3
  libgudev-1.0-0 libharfbuzz0b libhsa-runtime64-1 libhsakmt1 libhwloc-dev
  libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libice6 libicu-dev
  libicu72 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0
  libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui
  libjs-sphinxdoc libjs-underscore libjsoncpp25 liblapack3 liblbfgsb0
  liblcms2-2 libldap-2.5-0 liblerc-dev liblerc4 libllvm17t64 libltdl-dev
  libltdl7 liblzma-dev libmagic-mgc libmagic1t64 libmd4c0 libmtdev1t64
  libmunge2 libncursesw6 libnghttp2-14 libnl-3-200 libnl-3-dev
  libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopengl-dev
  libopengl0 libopenjp2-7 libopenmm-dev libopenmm-plugins libopenmm8.0t64
  libopenmpi-dev libopenmpi3t64 libpciaccess0 libpcre2-16-0 libpipeline1
  libpkgconf3 libpmix-dev libpmix2t64 libpng-dev libpng16-16t64 libproc2-0
  libpsl5t64 libpthread-stubs0-dev libpython3-dev libpython3-stdlib
  libpython3.11-dev libpython3.11-stdlib libpython3.11t64 libqhull-r8.0
  libqt5concurrent5t64 libqt5core5t64 libqt5dbus5t64 libqt5designer5
  libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5-dev
  libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64
  libqt5widgets5t64 libqt5xml5t64 libraqm0 librdmacm1t64 libreadline8t64
  librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config
  libsensors5 libsharpyuv-dev libsharpyuv0 libsm6 libsqlite3-0 libsqlite3-dev
  libssh2-1t64 libsub-override-perl libtcl8.6 libtiff-dev libtiff6 libtiffxx6
  libtk8.6 libtool libuchardet0 libucx0 libuv1t64 libvulkan-dev libvulkan1
  libwacom-common libwacom9 libwayland-client0 libwayland-server0 libwebp-dev
  libwebp7 libwebpdecoder3 libwebpdemux2 libwebpmux3 libx11-6 libx11-data
  libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0
  libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0
  libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0
  libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0
  libxcb-xkb1 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6
  libxfixes3 libxft2 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxnvctrl0
  libxrender1 libxshmfence1 libxslt1.1 libxss1 libxxf86vm1 libz3-4 libzstd-dev
  m4 man-db media-types mpi-default-bin mpi-default-dev netbase
  ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
  pkgconf pkgconf-bin po-debconf procps python-matplotlib-data python3
  python3-appdirs python3-attr python3-brotli python3-contourpy python3-cycler
  python3-dateutil python3-decorator python3-dev python3-distutils
  python3-fonttools python3-fs python3-kiwisolver python3-lib2to3 python3-lxml
  python3-lz4 python3-matplotlib python3-mpmath python3-numpy
  python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources
  python3-pyparsing python3-pyqt5 python3-pyqt5.sip python3-scipy
  python3-setuptools python3-six python3-sympy python3-tk python3-tz
  python3-ufolib2 python3-unicodedata2 python3.11 python3.11-dev qt5-qmake
  qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser readline-common
  sensible-utils shared-mime-info tk8.6-blt2.5 unicode-data voronota
  x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 432 newly installed, 0 to remove and 0 not upgraded.
Need to get 206 MB/276 MB of archives.
After this operation, 1499 MB of additional disk space will be used.
Get:1 https://repo.pureos.net/pureos landing/main arm64 libedit2 arm64 3.1-20230828-1+b1 [89.1 kB]
Get:2 https://repo.pureos.net/pureos landing/main arm64 libcbor0.10 arm64 0.10.2-1.1 [27.0 kB]
Get:3 https://repo.pureos.net/pureos landing/main arm64 libfido2-1 arm64 1.14.0-1+b2 [73.4 kB]
Get:4 https://repo.pureos.net/pureos landing/main arm64 openssh-client arm64 1:9.7p1-4 [902 kB]
Get:5 https://repo.pureos.net/pureos landing/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1 [975 kB]
Get:6 https://repo.pureos.net/pureos landing/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB]
Get:7 https://repo.pureos.net/pureos landing/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB]
Get:8 https://repo.pureos.net/pureos landing/main arm64 libtk8.6 arm64 8.6.14-1 [732 kB]
Get:9 https://repo.pureos.net/pureos landing/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB]
Get:10 https://repo.pureos.net/pureos landing/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B]
Get:11 https://repo.pureos.net/pureos landing/main arm64 clustalw arm64 2.1+lgpl-7 [248 kB]
Get:12 https://repo.pureos.net/pureos landing/main all dh-python all 6.20240422 [107 kB]
Get:13 https://repo.pureos.net/pureos landing/main all libcifpp-data all 5.0.7.1-3 [452 kB]
Get:14 https://repo.pureos.net/pureos landing/main arm64 libcifpp5 arm64 5.0.7.1-3+b1 [743 kB]
Get:15 https://repo.pureos.net/pureos landing/main arm64 dssp arm64 4.2.2-2 [603 kB]
Get:16 https://repo.pureos.net/pureos landing/main arm64 fontconfig arm64 2.15.0-1.1 [462 kB]
Get:17 https://repo.pureos.net/pureos landing/main all fonts-lyx all 2.4.0~RC4-1 [189 kB]
Get:18 https://repo.pureos.net/pureos landing/main arm64 libgfortran-13-dev arm64 13.2.0-24 [401 kB]
Get:19 https://repo.pureos.net/pureos landing/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-24 [9297 kB]
Get:20 https://repo.pureos.net/pureos landing/main arm64 gfortran-13 arm64 13.2.0-24 [12.2 kB]
Get:21 https://repo.pureos.net/pureos landing/main arm64 libnl-3-200 arm64 3.7.0-0.3 [56.5 kB]
Get:22 https://repo.pureos.net/pureos landing/main arm64 libnl-route-3-200 arm64 3.7.0-0.3 [165 kB]
Get:23 https://repo.pureos.net/pureos landing/main arm64 libibverbs1 arm64 50.0-2+b1 [58.2 kB]
Get:24 https://repo.pureos.net/pureos landing/main arm64 ibverbs-providers arm64 50.0-2+b1 [315 kB]
Get:25 https://repo.pureos.net/pureos landing/main arm64 libz3-4 arm64 4.8.12-3.1+b2 [6508 kB]
Get:26 https://repo.pureos.net/pureos landing/main arm64 libllvm17t64 arm64 1:17.0.6-12 [21.3 MB]
Get:27 https://repo.pureos.net/pureos landing/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b1 [12.1 MB]
Get:28 https://repo.pureos.net/pureos landing/main all libdrm-common all 2.4.120-2 [7688 B]
Get:29 https://repo.pureos.net/pureos landing/main arm64 libdrm2 arm64 2.4.120-2 [37.5 kB]
Get:30 https://repo.pureos.net/pureos landing/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [21.0 kB]
Get:31 https://repo.pureos.net/pureos landing/main arm64 libnuma1 arm64 2.0.18-1 [21.4 kB]
Get:32 https://repo.pureos.net/pureos landing/main arm64 libhsakmt1 arm64 5.7.0-1 [57.6 kB]
Get:33 https://repo.pureos.net/pureos landing/main arm64 libhsa-runtime64-1 arm64 5.7.1-2 [276 kB]
Get:34 https://repo.pureos.net/pureos landing/main arm64 libamdhip64-5 arm64 5.7.1-3 [8698 kB]
Get:35 https://repo.pureos.net/pureos landing/main arm64 libavahi-common-data arm64 0.8-13+b2 [112 kB]
Get:36 https://repo.pureos.net/pureos landing/main arm64 libavahi-common3 arm64 0.8-13+b2 [42.4 kB]
Get:37 https://repo.pureos.net/pureos landing/main arm64 libdbus-1-3 arm64 1.14.10-4+b1 [195 kB]
Get:38 https://repo.pureos.net/pureos landing/main arm64 libavahi-client3 arm64 0.8-13+b2 [45.7 kB]
Get:39 https://repo.pureos.net/pureos landing/main arm64 libboost1.83-dev arm64 1.83.0-2.1+b1 [10.6 MB]
Get:40 https://repo.pureos.net/pureos landing/main arm64 libboost-atomic1.83.0 arm64 1.83.0-2.1+b1 [233 kB]
Get:41 https://repo.pureos.net/pureos landing/main arm64 libboost-atomic1.83-dev arm64 1.83.0-2.1+b1 [234 kB]
Get:42 https://repo.pureos.net/pureos landing/main arm64 libboost-atomic-dev arm64 1.83.0.2+b2 [3892 B]
Get:43 https://repo.pureos.net/pureos landing/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-2.1+b1 [239 kB]
Get:44 https://repo.pureos.net/pureos landing/main arm64 libboost-chrono1.83-dev arm64 1.83.0-2.1+b1 [244 kB]
Get:45 https://repo.pureos.net/pureos landing/main arm64 libboost-chrono-dev arm64 1.83.0.2+b2 [4212 B]
Get:46 https://repo.pureos.net/pureos landing/main arm64 libboost-container1.83.0 arm64 1.83.0-2.1+b1 [258 kB]
Get:47 https://repo.pureos.net/pureos landing/main arm64 libboost-container1.83-dev arm64 1.83.0-2.1+b1 [264 kB]
Get:48 https://repo.pureos.net/pureos landing/main arm64 libboost-container-dev arm64 1.83.0.2+b2 [4064 B]
Get:49 https://repo.pureos.net/pureos landing/main arm64 libboost-date-time1.83.0 arm64 1.83.0-2.1+b1 [230 kB]
Get:50 https://repo.pureos.net/pureos landing/main arm64 libboost-serialization1.83.0 arm64 1.83.0-2.1+b1 [324 kB]
Get:51 https://repo.pureos.net/pureos landing/main arm64 libboost-serialization1.83-dev arm64 1.83.0-2.1+b1 [372 kB]
Get:52 https://repo.pureos.net/pureos landing/main arm64 libboost-date-time1.83-dev arm64 1.83.0-2.1+b1 [239 kB]
Get:53 https://repo.pureos.net/pureos landing/main arm64 libboost-system1.83.0 arm64 1.83.0-2.1+b1 [230 kB]
Get:54 https://repo.pureos.net/pureos landing/main arm64 libboost-system1.83-dev arm64 1.83.0-2.1+b1 [231 kB]
Get:55 https://repo.pureos.net/pureos landing/main arm64 libboost-thread1.83.0 arm64 1.83.0-2.1+b1 [265 kB]
Get:56 https://repo.pureos.net/pureos landing/main arm64 libboost-thread1.83-dev arm64 1.83.0-2.1+b1 [277 kB]
Get:57 https://repo.pureos.net/pureos landing/main arm64 libboost-context1.83.0 arm64 1.83.0-2.1+b1 [231 kB]
Get:58 https://repo.pureos.net/pureos landing/main arm64 libboost-context1.83-dev arm64 1.83.0-2.1+b1 [232 kB]
Get:59 https://repo.pureos.net/pureos landing/main arm64 libboost-context-dev arm64 1.83.0.2+b2 [3792 B]
Get:60 https://repo.pureos.net/pureos landing/main arm64 libboost-coroutine1.83.0 arm64 1.83.0-2.1+b1 [234 kB]
Get:61 https://repo.pureos.net/pureos landing/main arm64 libboost-coroutine1.83-dev arm64 1.83.0-2.1+b1 [236 kB]
Get:62 https://repo.pureos.net/pureos landing/main arm64 libboost-coroutine-dev arm64 1.83.0.2+b2 [3860 B]
Get:63 https://repo.pureos.net/pureos landing/main arm64 libboost-date-time-dev arm64 1.83.0.2+b2 [3584 B]
Get:64 https://repo.pureos.net/pureos landing/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B]
Get:65 https://repo.pureos.net/pureos landing/main arm64 libboost-exception1.83-dev arm64 1.83.0-2.1+b1 [230 kB]
Get:66 https://repo.pureos.net/pureos landing/main arm64 libboost-exception-dev arm64 1.83.0.2+b2 [3572 B]
Get:67 https://repo.pureos.net/pureos landing/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-2.1+b1 [273 kB]
Get:68 https://repo.pureos.net/pureos landing/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-2.1+b1 [291 kB]
Get:69 https://repo.pureos.net/pureos landing/main arm64 libboost-fiber1.83.0 arm64 1.83.0-2.1+b1 [252 kB]
Get:70 https://repo.pureos.net/pureos landing/main arm64 libboost-fiber1.83-dev arm64 1.83.0-2.1+b1 [265 kB]
Get:71 https://repo.pureos.net/pureos landing/main arm64 libboost-fiber-dev arm64 1.83.0.2+b2 [4016 B]
Get:72 https://repo.pureos.net/pureos landing/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B]
Get:73 https://repo.pureos.net/pureos landing/main arm64 libboost-graph1.83.0 arm64 1.83.0-2.1+b1 [343 kB]
Get:74 https://repo.pureos.net/pureos landing/main arm64 libboost-regex1.83.0 arm64 1.83.0-2.1+b1 [311 kB]
Get:75 https://repo.pureos.net/pureos landing/main arm64 libboost-regex1.83-dev arm64 1.83.0-2.1+b1 [334 kB]
Get:76 https://repo.pureos.net/pureos landing/main arm64 libboost-test1.83.0 arm64 1.83.0-2.1+b1 [435 kB]
Get:77 https://repo.pureos.net/pureos landing/main arm64 libboost-test1.83-dev arm64 1.83.0-2.1+b1 [526 kB]
Get:78 https://repo.pureos.net/pureos landing/main arm64 libboost-graph1.83-dev arm64 1.83.0-2.1+b1 [375 kB]
Get:79 https://repo.pureos.net/pureos landing/main arm64 libboost-graph-dev arm64 1.83.0.2+b2 [3688 B]
Get:80 https://repo.pureos.net/pureos landing/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-8.1+b3 [125 kB]
Get:81 https://repo.pureos.net/pureos landing/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-8.1+b3 [54.3 kB]
Get:82 https://repo.pureos.net/pureos landing/main arm64 librdmacm1t64 arm64 50.0-2+b1 [66.6 kB]
Get:83 https://repo.pureos.net/pureos landing/main arm64 libfabric1 arm64 1.17.0-3+b1 [479 kB]
Get:84 https://repo.pureos.net/pureos landing/main arm64 libhwloc15 arm64 2.10.0-1+b1 [140 kB]
Get:85 https://repo.pureos.net/pureos landing/main arm64 libmunge2 arm64 0.5.15-4 [19.2 kB]
Get:86 https://repo.pureos.net/pureos landing/main arm64 libpciaccess0 arm64 0.17-3+b1 [51.1 kB]
Get:87 https://repo.pureos.net/pureos landing/main arm64 libxnvctrl0 arm64 535.171.04-1 [13.8 kB]
Get:88 https://repo.pureos.net/pureos landing/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1+b1 [39.3 kB]
Get:89 https://repo.pureos.net/pureos landing/main arm64 libhwloc-plugins arm64 2.10.0-1+b1 [18.0 kB]
Get:90 https://repo.pureos.net/pureos landing/main arm64 libpmix2t64 arm64 5.0.2-3 [580 kB]
Get:91 https://repo.pureos.net/pureos landing/main arm64 libucx0 arm64 1.16.0+ds-5 [938 kB]
Get:92 https://repo.pureos.net/pureos landing/main arm64 libopenmpi3t64 arm64 4.1.6-13.3 [2170 kB]
Get:93 https://repo.pureos.net/pureos landing/main arm64 libboost-mpi1.83.0 arm64 1.83.0-2.1+b1 [268 kB]
Get:94 https://repo.pureos.net/pureos landing/main arm64 libboost-graph-parallel1.83.0 arm64 1.83.0-2.1+b1 [275 kB]
Get:95 https://repo.pureos.net/pureos landing/main arm64 libboost-graph-parallel1.83-dev arm64 1.83.0-2.1+b1 [284 kB]
Get:96 https://repo.pureos.net/pureos landing/main arm64 libboost-graph-parallel-dev arm64 1.83.0.2+b2 [3716 B]
Get:97 https://repo.pureos.net/pureos landing/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-2.1+b1 [251 kB]
Get:98 https://repo.pureos.net/pureos landing/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-2.1+b1 [261 kB]
Get:99 https://repo.pureos.net/pureos landing/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B]
Get:100 https://repo.pureos.net/pureos landing/main arm64 libboost-json1.83.0 arm64 1.83.0-2.1+b1 [347 kB]
Get:101 https://repo.pureos.net/pureos landing/main arm64 libboost-json1.83-dev arm64 1.83.0-2.1+b1 [369 kB]
Get:102 https://repo.pureos.net/pureos landing/main arm64 libboost-json-dev arm64 1.83.0.2+b2 [3696 B]
Get:103 https://repo.pureos.net/pureos landing/main arm64 libboost-locale1.83.0 arm64 1.83.0-2.1+b1 [435 kB]
Get:104 https://repo.pureos.net/pureos landing/main arm64 libboost-locale1.83-dev arm64 1.83.0-2.1+b1 [539 kB]
Get:105 https://repo.pureos.net/pureos landing/main arm64 libboost-locale-dev arm64 1.83.0.2+b2 [3916 B]
Get:106 https://repo.pureos.net/pureos landing/main arm64 libboost-log1.83.0 arm64 1.83.0-2.1+b1 [641 kB]
Get:107 https://repo.pureos.net/pureos landing/main arm64 libboost-log1.83-dev arm64 1.83.0-2.1+b1 [851 kB]
Get:108 https://repo.pureos.net/pureos landing/main arm64 libboost-log-dev arm64 1.83.0.2+b2 [3788 B]
Get:109 https://repo.pureos.net/pureos landing/main arm64 libboost-math1.83.0 arm64 1.83.0-2.1+b1 [463 kB]
Get:110 https://repo.pureos.net/pureos landing/main arm64 libboost-math1.83-dev arm64 1.83.0-2.1+b1 [518 kB]
Get:111 https://repo.pureos.net/pureos landing/main arm64 libboost-math-dev arm64 1.83.0.2+b2 [3784 B]
Get:112 https://repo.pureos.net/pureos landing/main all openmpi-common all 4.1.6-13.3 [169 kB]
Get:113 https://repo.pureos.net/pureos landing/main arm64 libnl-3-dev arm64 3.7.0-0.3 [101 kB]
Get:114 https://repo.pureos.net/pureos landing/main arm64 libnl-route-3-dev arm64 3.7.0-0.3 [197 kB]
Get:115 https://repo.pureos.net/pureos landing/main arm64 libibverbs-dev arm64 50.0-2+b1 [626 kB]
Get:116 https://repo.pureos.net/pureos landing/main arm64 libnuma-dev arm64 2.0.18-1 [37.4 kB]
Get:117 https://repo.pureos.net/pureos landing/main arm64 libltdl7 arm64 2.4.7-7+b1 [393 kB]
Get:118 https://repo.pureos.net/pureos landing/main arm64 libltdl-dev arm64 2.4.7-7+b1 [165 kB]
Get:119 https://repo.pureos.net/pureos landing/main arm64 libhwloc-dev arm64 2.10.0-1+b1 [234 kB]
Get:120 https://repo.pureos.net/pureos landing/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-8.1+b3 [169 kB]
Get:121 https://repo.pureos.net/pureos landing/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-8.1+b3 [102 kB]
Get:122 https://repo.pureos.net/pureos landing/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-8.1+b3 [60.3 kB]
Get:123 https://repo.pureos.net/pureos landing/main arm64 libevent-dev arm64 2.1.12-stable-8.1+b3 [303 kB]
Get:124 https://repo.pureos.net/pureos landing/main arm64 libpmix-dev arm64 5.0.2-3 [3921 kB]
Get:125 https://repo.pureos.net/pureos landing/main all libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:126 https://repo.pureos.net/pureos landing/main arm64 openmpi-bin arm64 4.1.6-13.3 [225 kB]
Get:127 https://repo.pureos.net/pureos landing/main arm64 libopenmpi-dev arm64 4.1.6-13.3 [972 kB]
Get:128 https://repo.pureos.net/pureos landing/main arm64 mpi-default-dev arm64 1.15 [3152 B]
Get:129 https://repo.pureos.net/pureos landing/main arm64 libboost-mpi1.83-dev arm64 1.83.0-2.1+b1 [290 kB]
Get:130 https://repo.pureos.net/pureos landing/main arm64 libboost-mpi-dev arm64 1.83.0.2+b2 [3668 B]
Get:131 https://repo.pureos.net/pureos landing/main arm64 libboost-python1.83.0 arm64 1.83.0-2.1+b1 [334 kB]
Get:132 https://repo.pureos.net/pureos landing/main arm64 mpi-default-bin arm64 1.15 [2408 B]
Get:133 https://repo.pureos.net/pureos landing/main arm64 libboost-mpi-python1.83.0 arm64 1.83.0-2.1+b1 [406 kB]
Get:134 https://repo.pureos.net/pureos landing/main arm64 libboost-mpi-python1.83-dev arm64 1.83.0-2.1+b1 [239 kB]
Get:135 https://repo.pureos.net/pureos landing/main arm64 libboost-mpi-python-dev arm64 1.83.0.2+b2 [3700 B]
Get:136 https://repo.pureos.net/pureos landing/main arm64 libboost-nowide1.83.0 arm64 1.83.0-2.1+b1 [234 kB]
Get:137 https://repo.pureos.net/pureos landing/main arm64 libboost-nowide1.83-dev arm64 1.83.0-2.1+b1 [236 kB]
Get:138 https://repo.pureos.net/pureos landing/main arm64 libboost-nowide-dev arm64 1.83.0.2+b2 [3660 B]
Get:139 https://repo.pureos.net/pureos landing/main arm64 libboost-numpy1.83.0 arm64 1.83.0-2.1+b1 [245 kB]
Get:140 https://repo.pureos.net/pureos landing/main arm64 libboost-numpy1.83-dev arm64 1.83.0-2.1+b1 [253 kB]
Get:141 https://repo.pureos.net/pureos landing/main arm64 libboost-numpy-dev arm64 1.83.0.2+b2 [3632 B]
Get:142 https://repo.pureos.net/pureos landing/main arm64 libboost-program-options1.83.0 arm64 1.83.0-2.1+b1 [331 kB]
Get:143 https://repo.pureos.net/pureos landing/main arm64 libboost-program-options1.83-dev arm64 1.83.0-2.1+b1 [369 kB]
Get:144 https://repo.pureos.net/pureos landing/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B]
Get:145 https://repo.pureos.net/pureos landing/main arm64 libpython3.11t64 arm64 3.11.9-1 [1814 kB]
Get:146 https://repo.pureos.net/pureos landing/main arm64 libexpat1-dev arm64 2.6.2-1 [278 kB]
Get:147 https://repo.pureos.net/pureos landing/main arm64 libpython3.11-dev arm64 3.11.9-1 [4358 kB]
Get:148 https://repo.pureos.net/pureos landing/main arm64 libpython3-dev arm64 3.11.8-1 [9564 B]
Get:149 https://repo.pureos.net/pureos landing/main arm64 python3.11-dev arm64 3.11.9-1 [501 kB]
Get:150 https://repo.pureos.net/pureos landing/main all libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:151 https://repo.pureos.net/pureos landing/main all libjs-sphinxdoc all 7.2.6-6 [150 kB]
Get:152 https://repo.pureos.net/pureos landing/main arm64 python3-dev arm64 3.11.8-1 [26.1 kB]
Get:153 https://repo.pureos.net/pureos landing/main arm64 libboost-python1.83-dev arm64 1.83.0-2.1+b1 [371 kB]
Get:154 https://repo.pureos.net/pureos landing/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B]
Get:155 https://repo.pureos.net/pureos landing/main arm64 libboost-random1.83.0 arm64 1.83.0-2.1+b1 [238 kB]
Get:156 https://repo.pureos.net/pureos landing/main arm64 libboost-random1.83-dev arm64 1.83.0-2.1+b1 [241 kB]
Get:157 https://repo.pureos.net/pureos landing/main arm64 libboost-random-dev arm64 1.83.0.2+b2 [3584 B]
Get:158 https://repo.pureos.net/pureos landing/main arm64 libboost-regex-dev arm64 1.83.0.2+b2 [3852 B]
Get:159 https://repo.pureos.net/pureos landing/main arm64 libboost-serialization-dev arm64 1.83.0.2+b2 [3816 B]
Get:160 https://repo.pureos.net/pureos landing/main arm64 libboost-stacktrace1.83.0 arm64 1.83.0-2.1+b1 [274 kB]
Get:161 https://repo.pureos.net/pureos landing/main arm64 libboost-stacktrace1.83-dev arm64 1.83.0-2.1+b1 [245 kB]
Get:162 https://repo.pureos.net/pureos landing/main arm64 libboost-stacktrace-dev arm64 1.83.0.2+b2 [3580 B]
Get:163 https://repo.pureos.net/pureos landing/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B]
Get:164 https://repo.pureos.net/pureos landing/main arm64 libboost-test-dev arm64 1.83.0.2+b2 [3620 B]
Get:165 https://repo.pureos.net/pureos landing/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B]
Get:166 https://repo.pureos.net/pureos landing/main arm64 libboost-timer1.83.0 arm64 1.83.0-2.1+b1 [234 kB]
Get:167 https://repo.pureos.net/pureos landing/main arm64 libboost-timer1.83-dev arm64 1.83.0-2.1+b1 [236 kB]
Get:168 https://repo.pureos.net/pureos landing/main arm64 libboost-timer-dev arm64 1.83.0.2+b2 [3712 B]
Get:169 https://repo.pureos.net/pureos landing/main arm64 libboost1.83-tools-dev arm64 1.83.0-2.1+b1 [1386 kB]
Get:170 https://repo.pureos.net/pureos landing/main arm64 libboost-tools-dev arm64 1.83.0.2+b2 [3764 B]
Get:171 https://repo.pureos.net/pureos landing/main arm64 libboost-type-erasure1.83.0 arm64 1.83.0-2.1+b1 [244 kB]
Get:172 https://repo.pureos.net/pureos landing/main arm64 libboost-type-erasure1.83-dev arm64 1.83.0-2.1+b1 [249 kB]
Get:173 https://repo.pureos.net/pureos landing/main arm64 libboost-type-erasure-dev arm64 1.83.0.2+b2 [3676 B]
Get:174 https://repo.pureos.net/pureos landing/main arm64 libboost-url1.83.0 arm64 1.83.0-2.1+b1 [325 kB]
Get:175 https://repo.pureos.net/pureos landing/main arm64 libboost-url1.83-dev arm64 1.83.0-2.1+b1 [421 kB]
Get:176 https://repo.pureos.net/pureos landing/main arm64 libboost-url-dev arm64 1.83.0.2+b2 [3720 B]
Get:177 https://repo.pureos.net/pureos landing/main arm64 libboost-wave1.83.0 arm64 1.83.0-2.1+b1 [415 kB]
Get:178 https://repo.pureos.net/pureos landing/main arm64 libboost-wave1.83-dev arm64 1.83.0-2.1+b1 [489 kB]
Get:179 https://repo.pureos.net/pureos landing/main arm64 libboost-wave-dev arm64 1.83.0.2+b2 [3616 B]
Get:180 https://repo.pureos.net/pureos landing/main arm64 libboost-all-dev arm64 1.83.0.2+b2 [3924 B]
Get:181 https://repo.pureos.net/pureos landing/main arm64 libcups2t64 arm64 2.4.7-1.2+b1 [230 kB]
Get:182 https://repo.pureos.net/pureos landing/main arm64 libdouble-conversion3 arm64 3.3.0-1+b1 [37.0 kB]
Get:183 https://repo.pureos.net/pureos landing/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [18.7 kB]
Get:184 https://repo.pureos.net/pureos landing/main arm64 libdrm-radeon1 arm64 2.4.120-2 [21.1 kB]
Get:185 https://repo.pureos.net/pureos landing/main arm64 libglvnd0 arm64 1.7.0-1+b1 [41.7 kB]
Get:186 https://repo.pureos.net/pureos landing/main arm64 libgbm1 arm64 24.0.6-1+b1 [40.5 kB]
Get:187 https://repo.pureos.net/pureos landing/main arm64 libglapi-mesa arm64 24.0.6-1+b1 [46.8 kB]
Get:188 https://repo.pureos.net/pureos landing/main arm64 libx11-xcb1 arm64 2:1.8.7-1+b1 [232 kB]
Get:189 https://repo.pureos.net/pureos landing/main arm64 libxshmfence1 arm64 1.3-1+b1 [9080 B]
Get:190 https://repo.pureos.net/pureos landing/main arm64 libegl-mesa0 arm64 24.0.6-1+b1 [112 kB]
Get:191 https://repo.pureos.net/pureos landing/main arm64 libegl1 arm64 1.7.0-1+b1 [33.9 kB]
Get:192 https://repo.pureos.net/pureos landing/main arm64 libxfixes3 arm64 1:6.0.0-2+b1 [20.5 kB]
Get:193 https://repo.pureos.net/pureos landing/main arm64 libvulkan1 arm64 1.3.280.0-1 [119 kB]
Get:194 https://repo.pureos.net/pureos landing/main all libsensors-config all 1:3.6.0-9 [14.6 kB]
Get:195 https://repo.pureos.net/pureos landing/main arm64 libsensors5 arm64 1:3.6.0-9 [33.9 kB]
Get:196 https://repo.pureos.net/pureos landing/main arm64 libgl1-mesa-dri arm64 24.0.6-1+b1 [7020 kB]
Get:197 https://repo.pureos.net/pureos landing/main arm64 libglx-mesa0 arm64 24.0.6-1+b1 [150 kB]
Get:198 https://repo.pureos.net/pureos landing/main arm64 libglx0 arm64 1.7.0-1+b1 [31.0 kB]
Get:199 https://repo.pureos.net/pureos landing/main arm64 libgl1 arm64 1.7.0-1+b1 [90.9 kB]
Get:200 https://repo.pureos.net/pureos landing/main all x11proto-dev all 2024.1-1 [603 kB]
Get:201 https://repo.pureos.net/pureos landing/main arm64 libxau-dev arm64 1:1.0.9-1+b1 [21.5 kB]
Get:202 https://repo.pureos.net/pureos landing/main arm64 libxdmcp-dev arm64 1:1.1.2-3+b1 [40.6 kB]
Get:203 https://repo.pureos.net/pureos landing/main arm64 libpthread-stubs0-dev arm64 0.4-1+b1 [5324 B]
Get:204 https://repo.pureos.net/pureos landing/main arm64 libx11-dev arm64 2:1.8.7-1+b1 [861 kB]
Get:205 https://repo.pureos.net/pureos landing/main arm64 libglx-dev arm64 1.7.0-1+b1 [15.8 kB]
Get:206 https://repo.pureos.net/pureos landing/main arm64 libgl-dev arm64 1.7.0-1+b1 [101 kB]
Get:207 https://repo.pureos.net/pureos landing/main arm64 libegl-dev arm64 1.7.0-1+b1 [19.5 kB]
Get:208 https://repo.pureos.net/pureos landing/main all libeigen3-dev all 3.4.0-4 [1041 kB]
Get:209 https://repo.pureos.net/pureos landing/main arm64 libevdev2 arm64 1.13.1+dfsg-1+b1 [31.0 kB]
Get:210 https://repo.pureos.net/pureos landing/main arm64 libfftw3-double3 arm64 3.3.10-1+b2 [329 kB]
Get:211 https://repo.pureos.net/pureos landing/main arm64 libfftw3-long3 arm64 3.3.10-1+b2 [532 kB]
Get:212 https://repo.pureos.net/pureos landing/main arm64 libfftw3-single3 arm64 3.3.10-1+b2 [497 kB]
Get:213 https://repo.pureos.net/pureos landing/main arm64 libfftw3-bin arm64 3.3.10-1+b2 [43.2 kB]
Get:214 https://repo.pureos.net/pureos landing/main arm64 libfftw3-dev arm64 3.3.10-1+b2 [1213 kB]
Get:215 https://repo.pureos.net/pureos landing/main arm64 libopengl0 arm64 1.7.0-1+b1 [32.1 kB]
Get:216 https://repo.pureos.net/pureos landing/main arm64 libglu1-mesa arm64 9.0.2-1.1+b1 [156 kB]
Get:217 https://repo.pureos.net/pureos landing/main arm64 libopengl-dev arm64 1.7.0-1+b1 [5372 B]
Get:218 https://repo.pureos.net/pureos landing/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1+b1 [196 kB]
Get:219 https://repo.pureos.net/pureos landing/main arm64 libgudev-1.0-0 arm64 238-5 [13.6 kB]
Get:220 https://repo.pureos.net/pureos landing/main arm64 libice6 arm64 2:1.0.10-1+b1 [53.7 kB]
Get:221 https://repo.pureos.net/pureos landing/main all libwacom-common all 2.10.0-2 [62.5 kB]
Get:222 https://repo.pureos.net/pureos landing/main arm64 libwacom9 arm64 2.10.0-2 [21.5 kB]
Get:223 https://repo.pureos.net/pureos landing/main arm64 libinput-bin arm64 1.25.0-1+b2 [24.8 kB]
Get:224 https://repo.pureos.net/pureos landing/main arm64 libmtdev1t64 arm64 1.1.6-1.2 [21.9 kB]
Get:225 https://repo.pureos.net/pureos landing/main arm64 libinput10 arm64 1.25.0-1+b2 [116 kB]
Get:226 https://repo.pureos.net/pureos landing/main arm64 libjbig-dev arm64 2.1-6.1+b1 [30.2 kB]
Get:227 https://repo.pureos.net/pureos landing/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB]
Get:228 https://repo.pureos.net/pureos landing/main arm64 liblerc-dev arm64 4.0.0+ds-4+b1 [149 kB]
Get:229 https://repo.pureos.net/pureos landing/main arm64 libmd4c0 arm64 0.4.8-1+b1 [42.2 kB]
Get:230 https://repo.pureos.net/pureos landing/main arm64 libopenmm8.0t64 arm64 8.0.0+dfsg-6.1 [880 kB]
Get:231 https://repo.pureos.net/pureos landing/main arm64 libopenmm-dev arm64 8.0.0+dfsg-6.1 [323 kB]
Get:232 https://repo.pureos.net/pureos landing/main arm64 libopenmm-plugins arm64 8.0.0+dfsg-6.1 [1012 kB]
Get:233 https://repo.pureos.net/pureos landing/main arm64 libpcre2-16-0 arm64 10.42-4+b1 [217 kB]
Get:234 https://repo.pureos.net/pureos landing/main arm64 libpng-dev arm64 1.6.43-5 [356 kB]
Get:235 https://repo.pureos.net/pureos landing/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB]
Get:236 https://repo.pureos.net/pureos landing/main arm64 shared-mime-info arm64 2.4-4 [755 kB]
Get:237 https://repo.pureos.net/pureos landing/main arm64 libqt5core5t64 arm64 5.15.10+dfsg-7.2+b1 [1700 kB]
Get:238 https://repo.pureos.net/pureos landing/main arm64 libqt5concurrent5t64 arm64 5.15.10+dfsg-7.2+b1 [43.7 kB]
Get:239 https://repo.pureos.net/pureos landing/main arm64 libqt5dbus5t64 arm64 5.15.10+dfsg-7.2+b1 [205 kB]
Get:240 https://repo.pureos.net/pureos landing/main arm64 libqt5network5t64 arm64 5.15.10+dfsg-7.2+b1 [653 kB]
Get:241 https://repo.pureos.net/pureos landing/main arm64 libsm6 arm64 2:1.2.3-1+b1 [32.7 kB]
Get:242 https://repo.pureos.net/pureos landing/main arm64 libxcb-icccm4 arm64 0.4.1-1.1+b1 [26.5 kB]
Get:243 https://repo.pureos.net/pureos landing/main arm64 libxcb-util1 arm64 0.4.0-1+b1 [23.2 kB]
Get:244 https://repo.pureos.net/pureos landing/main arm64 libxcb-image0 arm64 0.4.0-2+b1 [22.0 kB]
Get:245 https://repo.pureos.net/pureos landing/main arm64 libxcb-keysyms1 arm64 0.4.0-1+b2 [16.0 kB]
Get:246 https://repo.pureos.net/pureos landing/main arm64 libxcb-render-util0 arm64 0.3.9-1+b1 [17.5 kB]
Get:247 https://repo.pureos.net/pureos landing/main arm64 libxcb-shape0 arm64 1.15-1 [106 kB]
Get:248 https://repo.pureos.net/pureos landing/main arm64 libxcb-xinerama0 arm64 1.15-1 [105 kB]
Get:249 https://repo.pureos.net/pureos landing/main arm64 libxcb-xinput0 arm64 1.15-1 [130 kB]
Get:250 https://repo.pureos.net/pureos landing/main arm64 libxcb-xkb1 arm64 1.15-1 [128 kB]
Get:251 https://repo.pureos.net/pureos landing/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1+b1 [15.4 kB]
Get:252 https://repo.pureos.net/pureos landing/main arm64 libqt5gui5t64 arm64 5.15.10+dfsg-7.2+b1 [3134 kB]
Get:253 https://repo.pureos.net/pureos landing/main arm64 libqt5widgets5t64 arm64 5.15.10+dfsg-7.2+b1 [2263 kB]
Get:254 https://repo.pureos.net/pureos landing/main arm64 libqt5xml5t64 arm64 5.15.10+dfsg-7.2+b1 [121 kB]
Get:255 https://repo.pureos.net/pureos landing/main arm64 libqt5designer5 arm64 5.15.10-7 [2717 kB]
Get:256 https://repo.pureos.net/pureos landing/main arm64 libqt5sql5t64 arm64 5.15.10+dfsg-7.2+b1 [120 kB]
Get:257 https://repo.pureos.net/pureos landing/main arm64 libqt5help5 arm64 5.15.10-7 [144 kB]
Get:258 https://repo.pureos.net/pureos landing/main arm64 libqt5opengl5t64 arm64 5.15.10+dfsg-7.2+b1 [142 kB]
Get:259 https://repo.pureos.net/pureos landing/main arm64 libqt5printsupport5t64 arm64 5.15.10+dfsg-7.2+b1 [197 kB]
Get:260 https://repo.pureos.net/pureos landing/main arm64 libqt5test5t64 arm64 5.15.10+dfsg-7.2+b1 [138 kB]
Get:261 https://repo.pureos.net/pureos landing/main arm64 libvulkan-dev arm64 1.3.280.0-1 [1348 kB]
Get:262 https://repo.pureos.net/pureos landing/main arm64 qt5-qmake-bin arm64 5.15.10+dfsg-7.2+b1 [910 kB]
Get:263 https://repo.pureos.net/pureos landing/main arm64 qtchooser arm64 66-2 [24.9 kB]
Get:264 https://repo.pureos.net/pureos landing/main arm64 qt5-qmake arm64 5.15.10+dfsg-7.2+b1 [223 kB]
Get:265 https://repo.pureos.net/pureos landing/main arm64 qtbase5-dev-tools arm64 5.15.10+dfsg-7.2+b1 [714 kB]
Get:266 https://repo.pureos.net/pureos landing/main arm64 qtbase5-dev arm64 5.15.10+dfsg-7.2+b1 [1119 kB]
Get:267 https://repo.pureos.net/pureos landing/main arm64 libqt5opengl5-dev arm64 5.15.10+dfsg-7.2+b1 [50.6 kB]
Get:268 https://repo.pureos.net/pureos landing/main arm64 libsharpyuv-dev arm64 1.4.0-0.1 [115 kB]
Get:269 https://repo.pureos.net/pureos landing/main arm64 libsqlite3-dev arm64 3.45.3-1 [1042 kB]
Get:270 https://repo.pureos.net/pureos landing/main arm64 libwebpdecoder3 arm64 1.4.0-0.1 [179 kB]
Get:271 https://repo.pureos.net/pureos landing/main arm64 libwebp-dev arm64 1.4.0-0.1 [400 kB]
Get:272 https://repo.pureos.net/pureos landing/main arm64 libtiffxx6 arm64 4.5.1+git230720-4 [149 kB]
Get:273 https://repo.pureos.net/pureos landing/main arm64 libtiff-dev arm64 4.5.1+git230720-4 [449 kB]
Get:274 https://repo.pureos.net/pureos landing/main arm64 libxslt1.1 arm64 1.1.35-1+b1 [221 kB]
Get:275 https://repo.pureos.net/pureos landing/main all python-matplotlib-data all 3.6.3-2 [2744 kB]
Get:276 https://repo.pureos.net/pureos landing/main all python3-appdirs all 1.4.4-4 [12.5 kB]
Get:277 https://repo.pureos.net/pureos landing/main all python3-attr all 23.2.0-2 [65.5 kB]
Get:278 https://repo.pureos.net/pureos landing/main arm64 python3-brotli arm64 1.1.0-2+b3 [316 kB]
Get:279 https://repo.pureos.net/pureos landing/main arm64 python3-contourpy arm64 1.0.7-3 [247 kB]
Get:280 https://repo.pureos.net/pureos landing/main all python3-cycler all 0.12.1-1 [9496 B]
Get:281 https://repo.pureos.net/pureos landing/main all python3-dateutil all 2.9.0-2 [79.4 kB]
Get:282 https://repo.pureos.net/pureos landing/main all python3-decorator all 5.1.1-5 [15.1 kB]
Get:283 https://repo.pureos.net/pureos landing/main arm64 python3-scipy arm64 1.11.4-6 [17.5 MB]
Get:284 https://repo.pureos.net/pureos landing/main all python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB]
Get:285 https://repo.pureos.net/pureos landing/main all python3-mpmath all 1.3.0-1 [419 kB]
Get:286 https://repo.pureos.net/pureos landing/main all python3-sympy all 1.12-7 [3869 kB]
Get:287 https://repo.pureos.net/pureos landing/main all python3-fs all 2.4.16-4 [95.4 kB]
Get:288 https://repo.pureos.net/pureos landing/main arm64 python3-lxml arm64 5.1.0-1 [1810 kB]
Get:289 https://repo.pureos.net/pureos landing/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b3 [26.6 kB]
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Get:301 https://repo.pureos.net/pureos landing/main arm64 voronota arm64 1.22.3149-2 [1919 kB]
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update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
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┌───────────────┐
│  Build        │
└───────────────┘
[1mdpkg-buildpackage: [0m[32minfo[0m: source package openstructure
[1mdpkg-buildpackage: [0m[32minfo[0m: source version 2.5.0-2
[1mdpkg-buildpackage: [0m[32minfo[0m: source distribution unstable
[1mdpkg-buildpackage: [0m[32minfo[0m: host architecture arm64
[1;35m dpkg-source --before-build .
[0m[1;35m debian/rules clean
[0mdh clean --with python3
   dh_clean
[1;35m debian/rules binary-arch
[0mdh binary-arch --with python3
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/srv/build/openstructure-2.5.0'
dh_auto_configure -- -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/aarch64-linux-gnu/openmm/plugins
	cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/aarch64-linux-gnu/openmm/plugins ..
-- The CXX compiler identification is GNU 13.2.0
-- The C compiler identification is GNU 13.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of void*
-- Check size of void* - done
[33mCMake Warning (dev) at cmake_support/OST.cmake:892 (exec_program):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  cmake_support/OST.cmake:921 (get_compiler_version)
  CMakeLists.txt:174 (setup_compiler_flags)
This warning is for project developers.  Use -Wno-dev to suppress it.
[0m
-- Found Python: /usr/bin/python3 (found suitable version "3.11.9", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
-- Found Boost package: python311
-- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: unit_test_framework
-- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: filesystem system
-- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: iostreams
-- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: program_options
-- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: regex
-- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: thread
-- Found OpenGL: /usr/lib/aarch64-linux-gnu/libOpenGL.so
-- Found EIGEN: /usr/include/eigen3 (Required is at least version "3.2.0")
-- Found SQLITE3: /usr/lib/aarch64-linux-gnu/libsqlite3.so (Required is at least version "3.7.13")
-- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3")
-- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found version "1.6.43")
-- Found FFTW: /usr/lib/aarch64-linux-gnu/libfftw3f.so
-- Found TIFF: /usr/lib/aarch64-linux-gnu/libtiff.so (found version "4.5.1")
-- Found OpenMM: /usr/lib/aarch64-linux-gnu/libOpenMM.so
-- Searching for python module PyQt5 for /usr/bin/python3
-- Found python module PyQt5
-- Searching for python module PyQt5.sip for /usr/bin/python3
-- Found python module PyQt5.sip
[0m[0m
-- OpenStructure will be built with the following options:
   Install Prefix                        (-DPREFIX) : /usr
   RPath in install                   (-DUSE_RPATH) : OFF
   Info support                     (-DENABLE_INFO) : ON
   Graphical interface               (-DENABLE_GUI) : ON
   OpenGL support                    (-DENABLE_GFX) : ON
   Shader support                    (-DUSE_SHADER) : OFF
   Numpy support                      (-DUSE_NUMPY) : OFF
   SpaceNav Device support         (-DENABLE_SPNAV) : OFF
   OpenMM support                     (-DENABLE_MM) : ON
   OpenMM plugins            (-DOPEN_MM_PLUGIN_DIR) : /usr/lib/aarch64-linux-gnu/openmm/plugins
   Optimize                            (-DOPTIMIZE) : ON
   Profiling support                    (-DPROFILE) : OFF
   Double Precision        (-DUSE_DOUBLE_PRECISION) : OFF
   Compound Lib                    (-DCOMPOUND_LIB) : NONE
   TMAlign and TMScore          (-DCOMPILE_TMTOOLS) : OFF
   Static Libraries               (-DENABLE_STATIC) : OFF
   Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON
   Hidden object visibility  (-DHIDDEN_VISIBILITY) : OFF
-- Configuring done (7.0s)
-- Generating done (1.9s)
[33mCMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR
    FETCHCONTENT_FULLY_DISCONNECTED

[0m
-- Build files have been written to: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu
make[1]: Leaving directory '/srv/build/openstructure-2.5.0'
   dh_auto_build -a
	cd obj-aarch64-linux-gnu && make -j32 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/srv/build/openstructure-2.5.0 -B/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/CMakeFiles /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend
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make  -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend
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make  -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color="
make  -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake "--color="
make  -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/bindings/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake "--color="
make  -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/conop/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake "--color="
make  -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/db/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake "--color="
make  -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/geom/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake "--color="
make  -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gfx/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake "--color="
make  -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/share /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake "--color="
make  -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/share /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake "--color="
make  -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/img/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/img/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake "--color="
make  -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/info/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/io/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/mm/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/seq/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/seq/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
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make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color="
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make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/conop/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/db/./__init__.py
make  -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/geom/./__init__.py
make  -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gfx/./__init__.py
make  -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/add_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/images/logo-small.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png
make  -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build
make  -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build
make  -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/dng/__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/dng/__init__.py
make  -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./__init__.py
make  -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/img/./__init__.py
make  -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build
make  -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/img/alg/./__init__.py
make  -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/info/./__init__.py
make  -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build
make  -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/io/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/mm/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/seq/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/seq/alg/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.5.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.11.9 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.11/dist-packages/ -P /srv/build/openstructure-2.5.0/cmake_support/substitute.cmake
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.5.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.11.9 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.11/dist-packages/ -P /srv/build/openstructure-2.5.0/cmake_support/substitute.cmake
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.5.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.11.9 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.11/dist-packages/ -P /srv/build/openstructure-2.5.0/cmake_support/substitute.cmake
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.5.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.11.9 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.11/dist-packages/ -P /srv/build/openstructure-2.5.0/cmake_support/substitute.cmake
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/actions/ost-compare-ligand-structures /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-ligand-structures
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/bin
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/pymod/./cleanup.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/conop/./cleanup.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./lga.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./lga.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/pymod/./py_gfx_obj.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gfx/./py_gfx_obj.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/close_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/color_options_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/color_options_widget.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/dng/termuse.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/dng/termuse.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./init_context_menu.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./init_context_menu.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/pymod/./antechamber.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/mm/./antechamber.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./views.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./views.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/pymod/./remote.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/io/./remote.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/./mat.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/seq/alg/./mat.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/actions/ost-compare-structures /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_geom_pymod
[  0%] Built target ost_img_pymod
[  0%] Built target ost_db_pymod
[  0%] Built target ost_img_alg_pymod
[  0%] Built target gui_images
[  0%] Built target ost_mol_pymod
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec
[  0%] Built target subst___init__.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/critical_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png
[  0%] Built target ost_info_pymod
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./hbplus.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./hbplus.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_seq_pymod
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/dng/superpositiondialog.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/dng/superpositiondialog.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/color_select_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/color_select_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./init_menubar.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./init_menubar.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./superpose.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./superpose.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/./renumber.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/seq/alg/./renumber.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/pymod/./repository.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/io/./repository.py
make  -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend
[  0%] Built target subst_dng
[  0%] Built target subst_ost_startup.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  0%] Built target subst_ost_config
[  0%] Built target subst_ost
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/actions/ost-compare-structures-legacy /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures-legacy
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake "--color="
[  0%] Built target ost_conop_pymod
[  0%] Built target ost_gfx_pymod
[  0%] Built target ost_mol_mm_pymod
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/tests
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/combo_options_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/combo_options_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/delete_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/dng/init.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/dng/init.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./msms.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./msms.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./init_spacenav.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./init_spacenav.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./qsscoring.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./qsscoring.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/./aaindex.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/seq/alg/./aaindex.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./settings.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./settings.py
[  0%] Built target ost_io_pymod
[  0%] Built target actions
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/distance_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./init_splash.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./init_splash.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./tmtools.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./tmtools.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/dng/menu.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/dng/menu.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/cpk_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/cpk_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/aaindex1 /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex1
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./trajectory_analysis.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./trajectory_analysis.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./stutil.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./stutil.py
[  0%] Built target create_stage
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/custom_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/custom_widget.py
make  -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./structure_analysis.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./structure_analysis.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./trajectory_viewer.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./trajectory_viewer.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/find_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./dssp.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./dssp.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend
make  -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend
make  -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend
make  -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend
make  -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend
make  -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/aaindex2 /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex2
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/geom/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color="
make  -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend
make  -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/config /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color="
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color="
make  -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/seq/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color="
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/info/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color="
make  -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./table.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./table.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color="
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/bindings/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color="
make  -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/conop/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color="
make  -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/db/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color="
make  -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/seq/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/img/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/img/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/io/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gfx/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/mm/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake "--color="
[  0%] Built target ost_gui_dng_pymod
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/gradient_editor_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/gradient_editor_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/information_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./helix_kinks.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./helix_kinks.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./clustalw.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./clustalw.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./helpwidget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./helpwidget.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build
make  -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/aaindex3 /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex3
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build
make  -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build
make  -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./table_selector.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./table_selector.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/export_helper/vector.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/config/./base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./base.hh
make  -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/export_helper/generic_property_def.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh
make  -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/impl/sequence_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh
make  -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info.hh
make  -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/pointer_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/src/./wrap_tmalign.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh
make  -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build
make  -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./conop.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./conop.hh
make  -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./sqlite_wrap.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./alignment_opts.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/raster_image/raster_image.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./anisotropic.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./svd_superpose.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/chemdict_parser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/map_iso_gen.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./forcefield.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/gradient_info_handler.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/gradient_info_handler.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/map_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./utils.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./utils.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./hbond.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./hbond.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./table.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./table.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./def.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./def.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./xmlrunner.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./xmlrunner.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/config/./config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/impl/sequence_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_error.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_error.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./processor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./processor.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/atom_group.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./sqlite_conv.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./clip_alignment.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/dispatch.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./auto_correlate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/star_parser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_parser.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/map_iso_gen_s.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_option_group.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./ff_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh
[  0%] Built target ost_seq_alg_pymod
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/menubar_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./gosty_startup.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./gosty_startup.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./naccess.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./naccess.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/gradient_list_model.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/gradient_list_model.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./exc.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./exc.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./lddt.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./lddt.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/export_helper/vec_to_list_conv.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/config/./dllexport.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./dllexport.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./testutils.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./testutils.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh
[  0%] Built target ost_bindings_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./conservation.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/atom_prop.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./amino_acids.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./amino_acids.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./clear.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clear.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/mmcif_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/map_iso_gen_s.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./buildingblock.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./sec_structure_segments.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./geom.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./geom.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/__init__.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/test_utils/compare_files.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/test_utils/compare_files.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/gradient_preset_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/gradient_preset_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/config/./version.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./version.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./hhblits.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./hhblits.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/rigid_body_manipulator_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./qsscore.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./qsscore.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/impl/sequence_list_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./linear_indexer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./linear_indexer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./diag.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./diag.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./clip_min_max.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./contact_prediction_score.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/map_iso_spec.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/atom_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/mmcif_info.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./local_dist_diff_test.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./block_modifiers.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh
[  0%] Built target ost_gui_pymod
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./mat.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./hhblits2.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./hhblits2.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./generic_property.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./generic_property.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_handle.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/selection_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./binary_container.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./binary_container.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/impl/sequence_list_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/hsc_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/hsc_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./conjugate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./model_check.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./model_check.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/atom_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./gromacs_block_modifiers.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./distance_test_common.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/selection_tool.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/io_profile.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/io_profile.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./contact_weight_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./scoring.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./scoring.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/map_octree.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh
[  0%] Built target ost_base_pymod
[  0%] Built target ost_config_headers
make  -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./sequence_list.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_list.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/show_sidebar_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_group.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_group.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./extract_data_helper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./distance_rmsd_test.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./mat2.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat2.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_base_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./hhblits3.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./hhblits3.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./integrity_error.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./integrity_error.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/chain_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./convolute.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./convolute.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./distance_map.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/octree_isocont.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./heuristic.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./heuristic.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/measure_tool.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/dcd_io.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./heuristic_block_modifiers.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./chain_mapping.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./chain_mapping.py
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/config /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color="
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./sequence_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_def.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./invalid_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./invalid_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/site_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_item.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_item.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./entropy.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./interaction.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./mat3.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat3.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./correlate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./correlate.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/cartoon_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./blast.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./blast.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./superpose_frames.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/immutable_preset_info_handler.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/immutable_preset_info_handler.py
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_crd_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/chain_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_option.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./compound.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./stereochemistry.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./stereochemistry.py
make  -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'.
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_db_headers
[  0%] Built target ost_config
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_manager.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/custom_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/split_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./mat4.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat4.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./alignment_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./filter_clashes.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./compound_lib.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./global_align.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/init_inspector.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/init_inspector.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./ptr_observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./ptr_observer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./cross_correlate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./ligand_scoring.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./ligand_scoring.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./settings.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./settings.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./cadscore.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./cadscore.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_factory.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_pqr_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/connector_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/connector_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vec.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./ins_del.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./log.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./log.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/cpk_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/inspector_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/inspector_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_mae_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/warning_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./density_slice.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./kclust.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./kclust.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_options_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./construct_cbeta.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./simulation.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./dockq.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./dockq.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/dihedral.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./rule_based.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./rule_based.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./log_sink.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./log_sink.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/manipulator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vec2.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec2.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_mmcif_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./modeller.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./clash_score.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./sequence_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./ialign.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./ialign.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/debug_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./dft.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./dft.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/stereo_data.json /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/stereo_data.json
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./local_align.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_path.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_path.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/refresh.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/map_level_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/map_level_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_options_win.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./minimal_compound_lib.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vec3.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec3.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/simple_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/entity_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./profile.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./profile.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./aligned_region.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_region.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./mmseqs2.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./mmseqs2.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./fft.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fft.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./trajectory_analysis.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./observer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_set.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_set.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  0%] Built target scene_icons
[  0%] Built target ost_mol_alg_pymod
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./structure_analysis.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/remote.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/remote.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/mouse_event.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_visitor.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./fftw_helper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./aligned_column.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./state_extractor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./dockq.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./dockq.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/entity_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./compound_lib_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./dyn_cast.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./dyn_cast.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vec4.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec4.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/sline_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/pdb_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./consistency_checks.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/map_tool.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/fragment_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset_editor_list_model.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset_editor_list_model.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_pdb_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./aligned_column_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./stdint.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./fill.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fill.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./system_creator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vecmat_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_verbose_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./ring_finder.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./ring_finder.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/trace_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_bindings_pymod
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/line_trace_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./semiglobal_align.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./item_type.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./stdint_msc.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint_msc.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./invalid_sequence.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/pdb_writer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset_editor_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset_editor_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./pdbize.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./topology_creator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./filter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./filter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_algorithm.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vecmat2_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/fragment_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh
[  0%] Built target ost_conop_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/base_row.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_sdf_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./geom_info_conversion.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/query_ast.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./adjacency_bitmap.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vecmat3_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./fourier_filters.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./views_from_sequences.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./sequence_identity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/backbone_trace.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./range.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./range.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset_info_handler.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset_info_handler.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./index.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./index.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./sequence_similarity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./topology.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./topology.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./profile_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./profile_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./item_type_cast.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type_cast.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/query_ast_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vecmat4_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/sdf_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset_list_model.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset_list_model.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/entity_detail.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/background_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./consistency_checks.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/index.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/index.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./contact_overlap.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/sdf_writer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./gaussian.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/type_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./units.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./units.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/query_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./subst_weight_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/entity_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./steep.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./steep.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./circular_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/conservation_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh
[  0%] Built target ost_seq_headers
[  0%] Built target ost_info_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/save_entity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/save_entity.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./variance_map.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/render_mode_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/render_mode_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/value_holder.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./gaussian_laplacian.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./constants.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./constants.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./domain_find.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./message.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./message.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/query_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/trace_renderer_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh
[  0%] Built target ost_mol_mm_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./platform.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./platform.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./highest_peak_search_3d.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/connect_renderer_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./algorithm.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./algorithm.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/residue_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./similarity_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/render_op.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/render_op.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/load_entity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_entity.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/secstr_row.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./circle_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./circle_mask.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./string_ref.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./string_ref.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/residue_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/mapped_property.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/surface_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite2.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/render_options_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/render_options_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./accessibility.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./histogram.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./histogram.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./sec_struct.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/load_surface.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_surface.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./pod_vector.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./pod_vector.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./composite_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./composite_mask.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./line_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite3.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/entity_renderer_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/scene_observer_impl.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/scene_observer_impl.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/surface_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./local_sigma_threshold.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/tabulated_trig.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./fixed_string.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./fixed_string.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./data_algorithm.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_algorithm.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./nonstandard.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/surface_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/scene_selection_helper.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/scene_selection_helper.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/surface_io_msms_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./hmm_score.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./tri_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./tri_matrix.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/pdb_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/torsion_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./data_observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_observer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./mask_image.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./molck.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./molck.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/simple_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/simple_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/fast_spheres.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite2_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2_op.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_seq_alg_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./negate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./negate.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./data_types.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_types.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite3_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_model.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./find_membrane.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/sdf_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_str.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./boost_filesystem_helper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/sline_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/sline_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/torsion_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./entity_to_density.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/line_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_row.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./data.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./normalizer_factory.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/toolbar_options_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/toolbar_options_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/mmcif_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./atom_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./paged_array.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./paged_array.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./aligned_cuboid.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vec_mat_predicates.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/custom_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/trace_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/trace_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./debug.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./debug.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./atom_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./norm.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/stereochemical_params_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh
[  0%] Built target ost_mol_alg_headers
[  0%] Built target ost_base_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/omf.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/omf.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./normalizer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/tube_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/tube_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./dllexport.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./dllexport.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./atom_view.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_view.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./quat.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./quat.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/cpk_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./transform.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./transform.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./extent_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_iterator.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/load_map.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/load_map.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/simple_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./norm_linear.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./bond_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/uniform_color_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/uniform_color_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/sline_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./point_cloud.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./point_cloud.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./extent_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_mask.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/tick_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_df3_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./bond_table.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_table.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./norm_log.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/visibility_op.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/visibility_op.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/line_trace_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/line_trace_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/line_trace_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chain_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/title_row.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./extent.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/image_format.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/image_format.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./norm_od.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_dx_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./power_spectrum.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/wireframe_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/wireframe_widget.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chain_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/cartoon_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_factory.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_factory.hh
[  0%] Built target ost_geom_headers
make  -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/trace_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_spi_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chain_view.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_view.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/query_editor.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/query_editor.py
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./randomize.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./randomize.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/base_view_object.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/geom/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color="
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_handle_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_situs_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./smooth_mask_image.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chain_type.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_type.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make  -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_gui_scene_pymod
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chem_class.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_class.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/main_thread_runner.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./stat.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/by_element_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh
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cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o -MF CMakeFiles/ost_geom.dir/mat3.cc.o.d -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/mat3.cc
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cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -MF CMakeFiles/ost_geom.dir/mat2.cc.o.d -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/mat2.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o -MF CMakeFiles/ost_geom.dir/mat4.cc.o.d -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/mat4.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o -MF CMakeFiles/ost_geom.dir/vec3.cc.o.d -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/vec3.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/vecmat2_op.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat3_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/vecmat3_op.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat4_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/vecmat4_op.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o -MF CMakeFiles/ost_geom.dir/composite2.cc.o.d -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/composite2.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o -MF CMakeFiles/ost_geom.dir/composite3.cc.o.d -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/composite3.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o -MF CMakeFiles/ost_geom.dir/composite2_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/composite2_op.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o -MF CMakeFiles/ost_geom.dir/composite3_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/composite3_op.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -MF CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/quat.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/transform.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o.d -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/aligned_cuboid.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/point_cloud.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/output_redirector.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./stat_accumulator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/by_chain_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_mrc_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chem_type.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_type.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_dat_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/uniform_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_list.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_list.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./stat_min_max.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./coord_group.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_group.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/completer_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/dir_model.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./coord_source.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_source.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./threshold.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./threshold.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_ipl_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/gradient_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_state_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./in_mem_coord_source.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_jpk_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/gutter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./transcendentals.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_state.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/entity_view_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_nanoscope_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./coord_frame.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_frame.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/path_completer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./transform.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./inverted_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./inverted_mask.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_png_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./transform_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_context_parser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./editor_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_dm3_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./map.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./map.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_completer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/map_handle_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./alg_transform.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./editor_type_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./render_pass.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_pass.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_shell.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_tiff_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./alg_mirror.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./mol.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./mol.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask_base_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_shell_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/tiff_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/tiff_util.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./bitmap_io.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./alg_shift.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/jpk_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/jpk_util.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_shell_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./discrete_shrink.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./collada_exporter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_visitor.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./transformation_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/sequence_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./color.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./color.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_tokenizer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./transformations.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformations.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/fasta_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./entity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/pir_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_observer_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/text_logger.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./entity_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./fractional_shift.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_property_mapper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_interpreter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./normalizer_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gl_helper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/promod_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./normalizer_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./polar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./polar.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_view.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_view.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/profile_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_interpreter_worker.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./null_data.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./null_data.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/hhm_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./line_average.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_average.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./rscrosscorr.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/pssm_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/shell_history.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./observable.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./observable.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_visitor_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_node_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/state_machine.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/clustal_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./paste_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./paste_impl.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./handle_type_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh
[  1%] Built target ost_img_alg_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./ics_editor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./ics_editor.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/load.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/load.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_node_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./peak.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./peak.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/state.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_object_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/transition.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/save.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/save.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./not_connected_error.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./phase.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./phase.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./physical_units.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./physical_units.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/transition_guard.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./property_id.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./property_id.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_object.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./binary_data_sink.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./query.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./io_manager.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_manager.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/button_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./pixel_sampling.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_object_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./point_list.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point_list.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_prim.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/drop_box.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./query_error.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_error.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./binary_data_source.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_source.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./query_state.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_state.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./point.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./symmetry_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/panel_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/panel_manager.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_test_object.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./polygon_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./polygon_mask.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./residue_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./container_serialization.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./container_serialization.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./swap_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./swap_util.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./progress.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./progress.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./glwin_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./residue_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/bottom_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./input.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./input.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/button_box.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_box.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./residue_prop.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_prop.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./io_utils.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_utils.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./size.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./size.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./io_exception.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_exception.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./prim_list.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./prim_list.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./residue_view.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_view.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/event_button.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/event_button.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./spherical_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./spherical_mask.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/panel_widget_container.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./convert.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./convert.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./scene.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./sec_structure.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./sec_structure.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./util.cc /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./spatial_organizer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/panel_bar_widget_holder.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./selection.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./selection.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./converting_streams.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./converting_streams.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./surface.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./surface.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./value_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./value_util.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./formatted_line.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./formatted_line.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./surface.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/side_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/splitter_panel_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./surface_builder.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_builder.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/chemdict_parser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./vecmat.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./vecmat.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./texture.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./texture.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/tabbed_panel_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/star_parser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./star_parser.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./builder.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./builder.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./vertex_array.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask_info_convert.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/context_menu.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./surface_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/mmcif_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./vertex_array_helper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  1%] Built target ost_img_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./scene_observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./surface_prop.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_prop.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/current_selection_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/mmcif_info.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_info.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./torsion_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/custom_part_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gl_include.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_include.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/io_profile.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_profile.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./transfer_connectivity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./glext_include.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glext_include.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/entity_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/dcd_io.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./dcd_io.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./query_view_wrapper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_crd_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./render_mode.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_mode.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/entity_part_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/gfx_scene_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./material.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./material.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_pqr_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./view_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_mae_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./view_type_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/label_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gradient.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./view_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/root_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gradient_manager.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./xcs_editor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/render_mode_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/pdb_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_reader.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./primitives.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./primitives.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./bounding_box.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bounding_box.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/render_modes_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_pdb_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./povray_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./transform.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transform.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/scene_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./povray.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/scene_win.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/pdb_writer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_writer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_sdf_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./exporter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/scene_win_model.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh
[  1%] Built target ost_mol_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/sdf_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_reader.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/messages/message_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./exporter_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gost_exporter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/messages/message_box_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/sdf_writer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_writer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/messages/log_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/save_entity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save_entity.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./map_iso.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/argand.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/load_entity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_entity.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/data_viewer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/surface_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./map_slab.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_slab.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/load_surface.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_surface.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/data_viewer_panel.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./map_iso_prop.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/surface_io_msms_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh
[  1%] Built target ost_gfx_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/pdb_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_str.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/draw_overlay.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/sdf_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_str.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/drawing_functions.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/fft_panel.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/mmcif_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_str.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/info_panel.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/stereochemical_params_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/img2qt.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/omf.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./omf.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/sequence_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/mask_overlay.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/fasta_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/null_overlay.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/pir_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/promod_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_base_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/profile_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_manager.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/hhm_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/pssm_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/clustal_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/load.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/save.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/pointlist_overlay.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/load_map.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_map.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_df3_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/strategies.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/image_format.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./image_format.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/strategies_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_dx_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/viewer_normalizer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh
In file included from [01m[K/srv/build/openstructure-2.5.0/modules/geom/src/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/src/composite2.cc:23[m[K:
[01m[K/srv/build/openstructure-2.5.0/modules/geom/src/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/src/def.hh:26[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/src/composite2.hh:22[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/modules/geom/src/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./file_browser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_browser.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_spi_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./file_type_dialog.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_situs_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./file_viewer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_viewer.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./gl_canvas.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_mrc_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./gl_win.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_win.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_dat_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_ipl_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./scene_menu.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_menu.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_jpk_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./gosty_app.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gosty_app.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./admin.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./admin.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_nanoscope_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_png_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./module_config.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_dm3_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./main.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./main_area.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_area.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_tiff_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/tiff_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./tiff_util.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./perspective.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./perspective.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/jpk_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./jpk_util.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./scene_selection.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_selection.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./main_window.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_window.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  1%] Built target ost_io_headers
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./dock_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./dock_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./thin_splitter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./widget_geom_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./widget_pool.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_pool.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./widget_registry.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_registry.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./widget_state_saver.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./file_loader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_loader.hh
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  1%] Built target ost_gui_headers
In file included from [01m[K/srv/build/openstructure-2.5.0/modules/geom/src/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/src/composite2_op.hh:24[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/src/composite2_op.cc:24[m[K:
[01m[K/srv/build/openstructure-2.5.0/modules/geom/src/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/src/composite2_op.cc:19[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/modules/geom/src/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/modules/geom/src/quat.cc:[m[K In function ‘[01m[Kgeom::Quat geom::{anonymous}::[01;32m[Kextract_from_rotmat[m[K(const geom::Mat3&)[m[K’:
[01m[K/srv/build/openstructure-2.5.0/modules/geom/src/quat.cc:185:41:[m[K [01;36m[Knote: [m[Kparameter passing for argument of type ‘[01m[Kgeom::Quat[m[K’ when C++17 is enabled changed to match C++14 ]8;;https://gcc.gnu.org/gcc-10/changes.html#empty_basein GCC 10.1]8;;
  185 | Quat extract_from_rotmat(const Mat3& rot[01;36m[K)[m[K
      |                                         [01;36m[K^[m[K
[01m[K/srv/build/openstructure-2.5.0/modules/geom/src/composite3.cc:[m[K In member function ‘[01m[Kgeom::Quat geom::Rotation3::[01;32m[KGetQuat[m[K() const[m[K’:
[01m[K/srv/build/openstructure-2.5.0/modules/geom/src/composite3.cc:218:27:[m[K [01;36m[Knote: [m[Kparameter passing for argument of type ‘[01m[Kgeom::Quat[m[K’ when C++17 is enabled changed to match C++14 ]8;;https://gcc.gnu.org/gcc-10/changes.html#empty_basein GCC 10.1]8;;
  218 | Quat Rotation3::GetQuat() [01;36m[Kconst[m[K
      |                           [01;36m[K^~~~~[m[K
[  1%] [32m[1mLinking CXX shared library ../../../stage/lib/libost_geom.so[0m
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.5 -o ../../../stage/lib/libost_geom.so.2.5.0 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o   -L/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.5.0 ../../../stage/lib/libost_geom.so.2.5 ../../../stage/lib/libost_geom.so
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  1%] Built target ost_geom
make  -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend
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make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/geom/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake "--color="
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cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/units.cc.o -MF CMakeFiles/ost_base.dir/units.cc.o.d -o CMakeFiles/ost_base.dir/units.cc.o -c /srv/build/openstructure-2.5.0/modules/base/src/units.cc
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cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.11 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat4.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/pymod/export_mat4.cc
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cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.11 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite3.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.11 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite2_op.cc
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cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o -MF CMakeFiles/ost_info.dir/info_item.cc.o.d -o CMakeFiles/ost_info.dir/info_item.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_item.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o -MF CMakeFiles/ost_info.dir/info_path.cc.o.d -o CMakeFiles/ost_info.dir/info_path.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_path.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o -MF CMakeFiles/ost_info.dir/info_set.cc.o.d -o CMakeFiles/ost_info.dir/info_set.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_set.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_visitor.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -MF CMakeFiles/ost_info.dir/geom_info_conversion.cc.o.d -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/geom_info_conversion.cc
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_verbose_visitor.cc
[01m[Kc++:[m[K [01;31m[Kfatal error: [m[KKilled signal terminated program cc1plus
compilation terminated.
make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:93: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o] Error 1
make[3]: *** Waiting for unfinished jobs....
[01m[Kc++:[m[K [01;31m[Kfatal error: [m[KKilled signal terminated program cc1plus
compilation terminated.
make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:219: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o] Error 1
[01m[Kc++:[m[K [01;31m[Kfatal error: [m[KKilled signal terminated program cc1plus
compilation terminated.
make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:247: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o] Error 1
[01m[Kc++:[m[K [01;31m[Kfatal error: [m[KKilled signal terminated program cc1plus
compilation terminated.
make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:261: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o] Error 1
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/info_group.hh:33[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/info.hh:32[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/geom_info_conversion.cc:19[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_group.hh:33[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info.hh:32[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_group.cc:27[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/base.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_handle.hh:31[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info.hh:31[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/base.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/info_handle.hh:31[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/info.hh:31[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_group.hh:33[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info.hh:32[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_handle.cc:30[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_iterator_base_funcs.h:66[m[K,
                 from [01m[K/usr/include/c++/13/string:47[m[K,
                 from [01m[K/usr/include/c++/13/bits/locale_classes.h:40[m[K,
                 from [01m[K/usr/include/c++/13/bits/ios_base.h:41[m[K,
                 from [01m[K/usr/include/c++/13/ios:44[m[K,
                 from [01m[K/usr/include/c++/13/ostream:40[m[K,
                 from [01m[K/usr/include/c++/13/iostream:41[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_handle.cc:27[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_group.hh:33[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_verbose_visitor.cc:28[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_iterator_base_funcs.h:66[m[K,
                 from [01m[K/usr/include/c++/13/string:47[m[K,
                 from [01m[K/usr/include/c++/13/bits/locale_classes.h:40[m[K,
                 from [01m[K/usr/include/c++/13/bits/ios_base.h:41[m[K,
                 from [01m[K/usr/include/c++/13/ios:44[m[K,
                 from [01m[K/usr/include/c++/13/ostream:40[m[K,
                 from [01m[K/usr/include/c++/13/iostream:41[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_verbose_visitor.cc:25[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[Kc++:[m[K [01;31m[Kfatal error: [m[KKilled signal terminated program cc1plus
compilation terminated.
make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:121: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o] Error 1
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_quat.cc:22[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/usr/include/c++/13/math.h:36[m[K,
                 from [01m[K/usr/include/python3.11/pyport.h:218[m[K,
                 from [01m[K/usr/include/python3.11/Python.h:38[m[K,
                 from [01m[K/usr/include/boost/python/detail/wrap_python.hpp:178[m[K,
                 from [01m[K/usr/include/boost/python/detail/prefix.hpp:13[m[K,
                 from [01m[K/usr/include/boost/python/args.hpp:8[m[K,
                 from [01m[K/usr/include/boost/python.hpp:11[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_quat.cc:19[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_vecmat4_op.cc:23[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/usr/include/c++/13/math.h:36[m[K,
                 from [01m[K/usr/include/python3.11/pyport.h:218[m[K,
                 from [01m[K/usr/include/python3.11/Python.h:38[m[K,
                 from [01m[K/usr/include/boost/python/detail/wrap_python.hpp:178[m[K,
                 from [01m[K/usr/include/boost/python/detail/prefix.hpp:13[m[K,
                 from [01m[K/usr/include/boost/python/args.hpp:8[m[K,
                 from [01m[K/usr/include/boost/python.hpp:11[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_vecmat4_op.cc:20[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_mat3.cc:23[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/usr/include/c++/13/math.h:36[m[K,
                 from [01m[K/usr/include/python3.11/pyport.h:218[m[K,
                 from [01m[K/usr/include/python3.11/Python.h:38[m[K,
                 from [01m[K/usr/include/boost/python/detail/wrap_python.hpp:178[m[K,
                 from [01m[K/usr/include/boost/python/detail/prefix.hpp:13[m[K,
                 from [01m[K/usr/include/boost/python/args.hpp:8[m[K,
                 from [01m[K/usr/include/boost/python.hpp:11[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_mat3.cc:19[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_quat.cc:[m[K In function ‘[01m[Kgeom::Quat[01;32m[K normalize[m[K(const geom::Quat&)[m[K’:
[01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_quat.cc:24:42:[m[K [01;36m[Knote: [m[Kparameter passing for argument of type ‘[01m[Kgeom::Quat[m[K’ when C++17 is enabled changed to match C++14 ]8;;https://gcc.gnu.org/gcc-10/changes.html#empty_basein GCC 10.1]8;;
   24 | geom::Quat normalize (const geom::Quat& q[01;36m[K)[m[K
      |                                          [01;36m[K^[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/wrap_geom.cc:22[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/usr/include/c++/13/math.h:36[m[K,
                 from [01m[K/usr/include/python3.11/pyport.h:218[m[K,
                 from [01m[K/usr/include/python3.11/Python.h:38[m[K,
                 from [01m[K/usr/include/boost/python/detail/wrap_python.hpp:178[m[K,
                 from [01m[K/usr/include/boost/python/detail/prefix.hpp:13[m[K,
                 from [01m[K/usr/include/boost/python/args.hpp:8[m[K,
                 from [01m[K/usr/include/boost/python.hpp:11[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/wrap_geom.cc:19[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec4.cc:22[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/usr/include/c++/13/math.h:36[m[K,
                 from [01m[K/usr/include/python3.11/pyport.h:218[m[K,
                 from [01m[K/usr/include/python3.11/Python.h:38[m[K,
                 from [01m[K/usr/include/boost/python/detail/wrap_python.hpp:178[m[K,
                 from [01m[K/usr/include/boost/python/detail/prefix.hpp:13[m[K,
                 from [01m[K/usr/include/boost/python/args.hpp:8[m[K,
                 from [01m[K/usr/include/boost/python.hpp:11[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec4.cc:19[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_mat2.cc:22[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/usr/include/c++/13/math.h:36[m[K,
                 from [01m[K/usr/include/python3.11/pyport.h:218[m[K,
                 from [01m[K/usr/include/python3.11/Python.h:38[m[K,
                 from [01m[K/usr/include/boost/python/detail/wrap_python.hpp:178[m[K,
                 from [01m[K/usr/include/boost/python/detail/prefix.hpp:13[m[K,
                 from [01m[K/usr/include/boost/python/args.hpp:8[m[K,
                 from [01m[K/usr/include/boost/python.hpp:11[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_mat2.cc:19[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite3.cc:21[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/usr/include/c++/13/math.h:36[m[K,
                 from [01m[K/usr/include/python3.11/pyport.h:218[m[K,
                 from [01m[K/usr/include/python3.11/Python.h:38[m[K,
                 from [01m[K/usr/include/boost/python/detail/wrap_python.hpp:178[m[K,
                 from [01m[K/usr/include/boost/python/detail/prefix.hpp:13[m[K,
                 from [01m[K/usr/include/boost/python/args.hpp:8[m[K,
                 from [01m[K/usr/include/boost/python.hpp:11[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite3.cc:19[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec3.cc:22[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/usr/include/c++/13/math.h:36[m[K,
                 from [01m[K/usr/include/python3.11/pyport.h:218[m[K,
                 from [01m[K/usr/include/python3.11/Python.h:38[m[K,
                 from [01m[K/usr/include/boost/python/detail/wrap_python.hpp:178[m[K,
                 from [01m[K/usr/include/boost/python/detail/prefix.hpp:13[m[K,
                 from [01m[K/usr/include/boost/python/args.hpp:8[m[K,
                 from [01m[K/usr/include/boost/python.hpp:11[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec3.cc:19[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec2.cc:23[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_algobase.h:65[m[K,
                 from [01m[K/usr/include/c++/13/bits/specfun.h:43[m[K,
                 from [01m[K/usr/include/c++/13/cmath:3699[m[K,
                 from [01m[K/usr/include/c++/13/math.h:36[m[K,
                 from [01m[K/usr/include/python3.11/pyport.h:218[m[K,
                 from [01m[K/usr/include/python3.11/Python.h:38[m[K,
                 from [01m[K/usr/include/boost/python/detail/wrap_python.hpp:178[m[K,
                 from [01m[K/usr/include/boost/python/detail/prefix.hpp:13[m[K,
                 from [01m[K/usr/include/boost/python/args.hpp:8[m[K,
                 from [01m[K/usr/include/boost/python.hpp:11[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec2.cc:19[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_group.hh:33[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_set.hh:29[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_set.cc:29[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_iterator_base_funcs.h:66[m[K,
                 from [01m[K/usr/include/c++/13/string:47[m[K,
                 from [01m[K/usr/include/c++/13/bits/locale_classes.h:40[m[K,
                 from [01m[K/usr/include/c++/13/bits/ios_base.h:41[m[K,
                 from [01m[K/usr/include/c++/13/ios:44[m[K,
                 from [01m[K/usr/include/c++/13/ostream:40[m[K,
                 from [01m[K/usr/include/c++/13/iostream:41[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_set.cc:25[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_group.hh:33[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info.hh:32[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_item.cc:31[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_iterator_base_funcs.h:66[m[K,
                 from [01m[K/usr/include/c++/13/string:47[m[K,
                 from [01m[K/usr/include/c++/13/bits/locale_classes.h:40[m[K,
                 from [01m[K/usr/include/c++/13/bits/ios_base.h:41[m[K,
                 from [01m[K/usr/include/c++/13/ios:44[m[K,
                 from [01m[K/usr/include/c++/13/ostream:40[m[K,
                 from [01m[K/usr/include/c++/13/iostream:41[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_item.cc:27[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
In file included from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_impl.hh:41[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_impl.cc:37[m[K:
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
   25 | class const_circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                         [01;35m[K^~~~~~~~[m[K
In file included from [01m[K/usr/include/c++/13/bits/stl_iterator_base_funcs.h:66[m[K,
                 from [01m[K/usr/include/c++/13/string:47[m[K,
                 from [01m[K/usr/include/c++/13/bits/locale_classes.h:40[m[K,
                 from [01m[K/usr/include/c++/13/bits/ios_base.h:41[m[K,
                 from [01m[K/usr/include/c++/13/ios:44[m[K,
                 from [01m[K/usr/include/c++/13/ostream:40[m[K,
                 from [01m[K/usr/include/c++/13/iostream:41[m[K,
                 from [01m[K/srv/build/openstructure-2.5.0/modules/info/src/info_impl.cc:27[m[K:
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[K/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35:[m[K [01;35m[Kwarning: [m[K‘[01m[Ktemplate<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator[m[K’ is deprecated [[01;35m[K]8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;[m[K]
  100 | class circular_iter : public std::[01;35m[Kiterator[m[K<std::bidirectional_iterator_tag,typename T::value_type>
      |                                   [01;35m[K^~~~~~~~[m[K
[01m[K/usr/include/c++/13/bits/stl_iterator_base_types.h:127:34:[m[K [01;36m[Knote: [m[Kdeclared here
  127 |     struct _GLIBCXX17_DEPRECATED [01;36m[Kiterator[m[K
      |                                  [01;36m[K^~~~~~~~[m[K
[01m[Kc++:[m[K [01;31m[Kfatal error: [m[KKilled signal terminated program cc1plus
compilation terminated.
make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:205: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o] Error 1
In file included from [01m[K/usr/include/boost/preprocessor/iteration/detail/iter/limits/forward1_256.hpp:14[m[K,
                 from [01m[K/usr/include/boost/preprocessor/iteration/detail/iter/forward1.hpp:1343[m[K,
                 from [01m[K/usr/include/boost/python/detail/invoke.hpp:61[m[K,
                 from [01m[K/usr/include/boost/python/detail/caller.hpp:16[m[K,
                 from [01m[K/usr/include/boost/python/object/function_handle.hpp:8[m[K,
                 from [01m[K/usr/include/boost/python/converter/arg_to_python.hpp:19[m[K,
                 from [01m[K/usr/include/boost/python/call.hpp:15[m[K,
                 from [01m[K/usr/include/boost/python/object_core.hpp:14[m[K,
                 from [01m[K/usr/include/boost/python/args.hpp:22[m[K:
[01m[K/usr/include/boost/python/detail/invoke.hpp:[m[K In function ‘[01m[KPyObject* boost::python::detail::[01;32m[Kinvoke[m[K(invoke_tag_<false, true>, const RC&, F&, TC&) [35m[K[with RC = boost::python::to_python_value<const geom::Quat&>; F = geom::Quat (geom::Rotation3::*)() const; TC = boost::python::arg_from_python<geom::Rotation3&>][m[K[m[K’:
[01m[K/usr/include/boost/python/detail/invoke.hpp:86:25:[m[K [01;36m[Knote: [m[Kparameter passing for argument of type ‘[01m[Kgeom::Quat[m[K’ when C++17 is enabled changed to match C++14 ]8;;https://gcc.gnu.org/gcc-10/changes.html#empty_basein GCC 10.1]8;;
   86 |     return rc( [01;36m[K(tc().*f)(BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, ac, () BOOST_PP_INTERCEPT))[m[K );
      |                [01;36m[K~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~[m[K
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:3648: modules/geom/pymod/CMakeFiles/_ost_geom.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
[  6%] [32m[1mLinking CXX shared library ../../../stage/lib/libost_info.so[0m
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.5 -o ../../../stage/lib/libost_info.so.2.5.0 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o   -L/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.10 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.10 ../../../stage/lib/libost_base.so.2.5.0 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.10 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.10 ../../../stage/lib/libost_geom.so.2.5.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_system.so.1.83.0
cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.5.0 ../../../stage/lib/libost_info.so.2.5 ../../../stage/lib/libost_info.so
make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[  6%] Built target ost_info
make[2]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
make[1]: *** [Makefile:159: all] Error 2
make[1]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu'
[1mdh_auto_build[0m: [1;31merror[0m: cd obj-aarch64-linux-gnu && make -j32 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:11: binary-arch] Error 2
[1mdpkg-buildpackage: [0m[1;31merror[0m: debian/rules binary-arch subprocess returned exit status 2
Command `dpkg-buildpackage --changes-option=-DDistribution=landing -B -mDebichem Team <debichem-devel@lists.alioth.debian.org> -eDebichem Team <debichem-devel@lists.alioth.debian.org>` failed.
Command debspawn build --no-buildlog --arch=arm64 --results-dir=/var/lib/lkspark/workspaces/41f9624e-0dc6-4529-b5f6-749aa55325dd --only=arch --maintainer=Debichem Team <debichem-devel@lists.alioth.debian.org> landing openstructure_2.5.0-2.dsc failed with error code 2