debspawn 0.6.5 on fennel at 2024-10-16 13:47:14 UTC-0700 gpgv: Signature made Sun 18 Aug 2024 03:14:12 AM PDT gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for /var/lib/lkspark/workspaces/456ab09c-5243-49f6-9d30-d98b7fecc752/r-bioc-spatialexperiment_1.14.0+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-spatialexperiment in r-bioc-spatialexperiment-1.14.0+ds dpkg-source: info: unpacking r-bioc-spatialexperiment_1.14.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-spatialexperiment_1.14.0+ds-2.debian.tar.xz ╔═══════════════════════╗ ║ Package build ║ ╚═══════════════════════╝ Package: r-bioc-spatialexperiment Version: 1.14.0+ds-2 Distribution: landing Architecture: amd64 Free space in workspace: 65.7GiB ┌───────────────────────────────────────┐ │ Preparing container for build │ └───────────────────────────────────────┘ Get:1 https://repo.pureos.net/pureos landing InRelease [9625 B] Get:2 https://repo.pureos.net/pureos landing/main amd64 Packages [4390 kB] Get:3 https://repo.pureos.net/pureos landing/main all Packages [3880 kB] Fetched 8279 kB in 2s (5267 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gpgv 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/218 kB of archives. After this operation, 1024 B disk space will be freed. debconf: delaying package configuration, since apt-utils is not installed (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13780 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.44-1_amd64.deb ... Unpacking gpgv (2.2.44-1) over (2.2.43-8+b1) ... Setting up gpgv (2.2.44-1) ... Reading package lists... Building dependency tree... Reading state information... build-essential is already the newest version (12.10). dpkg-dev is already the newest version (1.21.22pureos1). fakeroot is already the newest version (1.36-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌───────────────────────────────────────────────┐ │ Installing package build-dependencies │ └───────────────────────────────────────────────┘ Note, using directory './' to get the build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext gettext-base gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base icu-devtools imagemagick-6-common intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3t64-gnutls libcurl4t64 libdata-optlist-perl libdatrie1 libdav1d7 libde265-0 libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdynaloader-functions-perl libelf1t64 libencode-locale-perl libeval-closure-perl libfftw3-double3 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-14-dev libgfortran5 libglib2.0-0t64 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblcms2-2 libldap-2.5-0 liblerc4 liblqr-1-0 libltdl7 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1t64 libmagick++-6.q16-9t64 libmagickcore-6.q16-7t64 libmagickwand-6.q16-7t64 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libopenjp2-7 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64 libraw23t64 libreadline-dev libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwebpdemux2 libwebpmux3 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6t64 littler m4 man-db pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-s4arrays r-bioc-s4vectors r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-generics r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr readline-common sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 265 newly installed, 0 to remove and 0 not upgraded. Need to get 4765 kB/167 MB of archives. After this operation, 433 MB of additional disk space will be used. Get:1 https://repo.pureos.net/pureos landing/main amd64 libfftw3-double3 amd64 3.3.10-1+b3 [780 kB] Get:2 https://repo.pureos.net/pureos landing/main amd64 liblqr-1-0 amd64 0.4.2-2.1+b1 [29.2 kB] Get:3 https://repo.pureos.net/pureos landing/main amd64 libraw23t64 amd64 0.21.2-2.1 [388 kB] Get:4 https://repo.pureos.net/pureos landing/main all imagemagick-6-common all 8:6.9.13.12+dfsg1-1 [67.3 kB] Get:5 https://repo.pureos.net/pureos landing/main amd64 libmagickcore-6.q16-7t64 amd64 8:6.9.13.12+dfsg1-1 [1710 kB] Get:6 https://repo.pureos.net/pureos landing/main amd64 libmagickwand-6.q16-7t64 amd64 8:6.9.13.12+dfsg1-1 [311 kB] Get:7 https://repo.pureos.net/pureos landing/main amd64 libmagick++-6.q16-9t64 amd64 8:6.9.13.12+dfsg1-1 [144 kB] Get:8 https://repo.pureos.net/pureos landing/main all r-bioc-singlecellexperiment all 1.26.0+ds-1 [831 kB] Get:9 https://repo.pureos.net/pureos landing/main amd64 r-cran-magick amd64 2.8.5+dfsg-1 [505 kB] Fetched 4765 kB in 1s (9344 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libfftw3-double3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13779 files and directories currently installed.) Preparing to unpack .../000-libfftw3-double3_3.3.10-1+b3_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.10-1+b3) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../001-libbrotli1_1.1.0-2+b4_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b4) ... Selecting previously unselected package libpng16-16t64:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../106-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../107-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. 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Processing triggers for libc-bin (2.40-3) ... ┌───────────────┐ │ Build │ └───────────────┘ dpkg-buildpackage: info: source package r-bioc-spatialexperiment dpkg-buildpackage: info: source version 1.14.0+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: host architecture amd64  dpkg-source --before-build .  debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R  debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-spatialexperiment/ -O--buildsystem=R I: R Package: SpatialExperiment Version: 1.14.0 I: Building using R version 4.4.1-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 18 Aug 2024 12:13:48 +0200 mkdir -p /srv/build/r-bioc-spatialexperiment-1.14.0\+ds/debian/r-bioc-spatialexperiment/usr/lib/R/site-library R CMD INSTALL -l /srv/build/r-bioc-spatialexperiment-1.14.0\+ds/debian/r-bioc-spatialexperiment/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 18 Aug 2024 12:13:48 +0200'" * installing *source* package ‘SpatialExperiment’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpatialExperiment) I: Using r-bioc-singlecellexperiment for Depends:SingleCellExperiment I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-testthat for Suggests:testthat I: Using r-bioc-biocstyle for Suggests:BiocStyle W: Cannot find a debian package for Suggests:BumpyMatrix W: Cannot find a debian package for Suggests:DropletUtils I: Using r-cran-rjson for Imports:rjson I: Using r-cran-magick for Imports:magick I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-bioc-biocfilecache for Imports:BiocFileCache I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-spatialexperiment as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-spatialexperiment' in '../r-bioc-spatialexperiment_1.14.0+ds-2_all.deb'.  dpkg-genbuildinfo --build=binary -O../r-bioc-spatialexperiment_1.14.0+ds-2_amd64.buildinfo  dpkg-genchanges -DDistribution=landing --build=binary -mDebian R Packages Maintainers -eDebian R Packages Maintainers -O../r-bioc-spatialexperiment_1.14.0+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included)  dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) This build required 4.7MiB of dedicated disk space. ┌────────────────────────────────────┐ │ Retrieving build artifacts │ └────────────────────────────────────┘ Copied 4 files. Done.