debspawn 0.6.3 on cumin at 2023-06-08 05:29:09 UTC+0000
dpkg-source: info: extracting openstructure in openstructure-2.2.0
dpkg-source: info: unpacking openstructure_2.2.0.orig.tar.gz
dpkg-source: info: unpacking openstructure_2.2.0-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying python-dist-packages.patch
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dpkg-source: info: applying 9153648f1b773a1c1186d0a0ac29e78b659cd1f8.patch

╔═══════════════════════╗
║  Package build        ║
╚═══════════════════════╝
Package: openstructure
Version: 2.2.0-6
Distribution: landing
Architecture: arm64

Free space in workspace: 83.8GiB

┌───────────────────────────────────────┐
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Get:1 https://repo.pureos.net/pureos landing InRelease [8717 B]
Get:2 https://repo.pureos.net/pureos landing/main all Packages [3379 kB]
Get:3 https://repo.pureos.net/pureos landing/main arm64 Packages [3683 kB]
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build-essential is already the newest version (12.9).
fakeroot is already the newest version (1.25.3-1.1).
dpkg-dev is already the newest version (1.20.9pureos2).
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┌───────────────────────────────────────────────┐
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Note, using directory './' to get the build dependencies
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The following NEW packages will be installed:
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  mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin
  openmpi-common openssh-client pkg-config po-debconf procps
  python-matplotlib-data python3 python3-cycler python3-dateutil
  python3-decorator python3-dev python3-distutils python3-kiwisolver
  python3-lib2to3 python3-matplotlib python3-numpy python3-pil
  python3-pkg-resources python3-pyparsing python3-pyqt5 python3-pyqt5.sip
  python3-scipy python3-six python3.9 python3.9-dev qt5-qmake qt5-qmake-bin
  qtbase5-dev qtbase5-dev-tools qtchooser readline-common sensible-utils
  shared-mime-info sip-dev ttf-bitstream-vera ucf voronota x11-common
  x11proto-dev x11proto-xext-dev xkb-data xorg-sgml-doctools xtrans-dev
  zlib1g-dev
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Setting up python3-pyparsing (2.4.7-1) ...
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Setting up python3-kiwisolver (1.3.1-1+b1) ...
Setting up libboost-locale1.74-dev:arm64 (1.74.0-9) ...
Setting up python3-pyqt5.sip (12.8.1-1+b2) ...
Setting up python3.9-dev (3.9.2-1) ...
Setting up libglx-dev:arm64 (1.3.4-2pureos2) ...
Setting up python3-dateutil (2.8.1-6) ...
Setting up libboost-coroutine1.74-dev:arm64 (1.74.0-9) ...
Setting up libboost-coroutine-dev:arm64 (1.74.0.3) ...
Setting up libglu1-mesa:arm64 (9.0.1-1) ...
Setting up python3-lib2to3 (3.9.2-1) ...
Setting up libboost-log-dev (1.74.0.3) ...
Setting up libgl-dev:arm64 (1.3.4-2pureos2) ...
Setting up libboost-fiber-dev:arm64 (1.74.0.3) ...
Setting up python3-pkg-resources (52.0.0-4) ...
Setting up python3-distutils (3.9.2-1) ...
Setting up dh-python (4.20201102+nmu1) ...
Setting up libfabric1 (1.11.0-2) ...
Setting up libpython3-dev:arm64 (3.9.2-3) ...
Setting up libegl-dev:arm64 (1.3.4-2pureos2) ...
Setting up libpmix2:arm64 (4.0.0-4.1) ...
Setting up libopenmpi3:arm64 (4.1.0-10) ...
Setting up libboost-mpi1.74.0 (1.74.0-9) ...
Setting up libqt5gui5:arm64 (5.15.2+dfsg-9) ...
Setting up libboost-locale-dev:arm64 (1.74.0.3) ...
Setting up libqt5widgets5:arm64 (5.15.2+dfsg-9) ...
Setting up libboost-context-dev:arm64 (1.74.0.3) ...
Setting up libqt5help5:arm64 (5.15.2-5) ...
Setting up libboost-type-erasure-dev:arm64 (1.74.0.3) ...
Setting up libqt5printsupport5:arm64 (5.15.2+dfsg-9) ...
Setting up python3-dev (3.9.2-3) ...
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Setting up python3-numpy (1:1.19.5-1) ...
Setting up qtbase5-dev:arm64 (5.15.2+dfsg-9) ...
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Setting up openmpi-bin (4.1.0-10) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
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┌───────────────┐
│  Build        │
└───────────────┘
dpkg-buildpackage: info: source package openstructure
dpkg-buildpackage: info: source version 2.2.0-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: host architecture arm64
 dpkg-source --before-build .
 debian/rules clean
dh clean --with python3
   dh_clean
 debian/rules binary-arch
dh binary-arch --with python3
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/srv/build/openstructure-2.2.0'
dh_auto_configure -- -DUBUNTU_LAYOUT=ON
	cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DUBUNTU_LAYOUT=ON ..
-- The CXX compiler identification is GNU 10.2.1
-- The C compiler identification is GNU 10.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of void*
-- Check size of void* - done
-- Found Python: /usr/bin/python3.9 (found suitable version "3.9.2", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed 
CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:955 (find_package)
  CMakeLists.txt:198 (setup_boost)


-- Found Boost package: python39
CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:969 (find_package)
  CMakeLists.txt:198 (setup_boost)


-- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: unit_test_framework 
CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:976 (find_package)
  CMakeLists.txt:198 (setup_boost)


CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:976 (find_package)
  CMakeLists.txt:198 (setup_boost)


-- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: filesystem system 
CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:980 (find_package)
  CMakeLists.txt:198 (setup_boost)


CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:980 (find_package)
  CMakeLists.txt:198 (setup_boost)


-- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: iostreams regex 
CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:983 (find_package)
  CMakeLists.txt:198 (setup_boost)


-- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: program_options 
CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:986 (find_package)
  CMakeLists.txt:198 (setup_boost)


-- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: regex 
CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:989 (find_package)
  CMakeLists.txt:198 (setup_boost)


CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:989 (find_package)
  CMakeLists.txt:198 (setup_boost)


CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:989 (find_package)
  CMakeLists.txt:198 (setup_boost)


CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message):
  New Boost version may have incorrect or missing dependencies and imported
  targets
Call Stack (most recent call first):
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES)
  cmake_support/OST.cmake:989 (find_package)
  CMakeLists.txt:198 (setup_boost)


-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: thread chrono date_time atomic 
-- Found OpenGL: /usr/lib/aarch64-linux-gnu/libOpenGL.so   
-- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") 
-- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found version "1.6.37") 
-- Found EIGEN: /usr/include/eigen3 (Required is at least version "3.2.0") 
-- Found SQLITE3: /usr/lib/aarch64-linux-gnu/libsqlite3.so (Required is at least version "3.7.13") 
-- Found FFTW: /usr/lib/aarch64-linux-gnu/libfftw3f.so  
-- Found TIFF: /usr/lib/aarch64-linux-gnu/libtiff.so (found version "4.2.0") 
-- Searching for python module PyQt5 for /usr/bin/python3.9
-- Found python module PyQt5
-- Searching for python module PyQt5.sip for /usr/bin/python3.9
-- Found python module PyQt5.sip

-- OpenStructure will be built with the following options:
   Install Prefix                        (-DPREFIX) : /usr
   RPath in install                   (-DUSE_RPATH) : OFF
   Info support                     (-DENABLE_INFO) : ON
   Graphical interface               (-DENABLE_GUI) : ON
   OpenGL support                    (-DENABLE_GFX) : ON
   Image Processing support          (-DENABLE_IMG) : ON
   Shader support                    (-DUSE_SHADER) : OFF
   Numpy support                      (-DUSE_NUMPY) : OFF
   SpaceNav Device support         (-DENABLE_SPNAV) : OFF
   OpenMM support                     (-DENABLE_MM) : OFF
   OpenMM plugins            (-DOPEN_MM_PLUGIN_DIR) : NONE
   Optimize                            (-DOPTIMIZE) : OFF
   Profiling support                    (-DPROFILE) : OFF
   Double Precision        (-DUSE_DOUBLE_PRECISION) : OFF
   Compound Lib                    (-DCOMPOUND_LIB) : NONE
   TMAlign and TMScore          (-DCOMPILE_TMTOOLS) : OFF
   Static Libraries               (-DENABLE_STATIC) : OFF
   Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON
   Hidden object visibility  (-DHIDDEN_VISIBILITY) : OFF
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR


-- Build files have been written to: /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu
make[1]: Leaving directory '/srv/build/openstructure-2.2.0'
   dh_auto_build -a
	cd obj-aarch64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/srv/build/openstructure-2.2.0 -B/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/CMakeFiles /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks
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make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/conop/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/db/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/geom/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gfx/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/share /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/share /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/info/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend.internal".
Scanning dependencies of target ost_db_pymod
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend.internal".
Scanning dependencies of target subst___init__.py
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/depend.internal".
Scanning dependencies of target ost_bindings_pymod
Scanning dependencies of target create_stage
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend.internal".
Scanning dependencies of target ost_conop_pymod
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/depend.internal".
Scanning dependencies of target ost_geom_pymod
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/depend.internal".
Scanning dependencies of target scene_icons
Scanning dependencies of target gui_images
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend.internal".
Scanning dependencies of target ost_gui_scene_pymod
Scanning dependencies of target ost_gfx_pymod
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend.internal".
Scanning dependencies of target ost_gui_dng_pymod
Scanning dependencies of target ost_gui_pymod
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend.internal".
Scanning dependencies of target ost_img_pymod
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend.internal".
Scanning dependencies of target ost_img_alg_pymod
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
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Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend.internal".
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
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Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend.internal".
Scanning dependencies of target ost_io_pymod
make  -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build
Scanning dependencies of target ost_info_pymod
make  -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build
make  -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
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make  -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build
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make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
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make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build
make  -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build
make  -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build
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make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib
make  -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.2.0/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /srv/build/openstructure-2.2.0/cmake_support/substitute.cmake
make  -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./__init__.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/db/./__init__.py
make  -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build
make  -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/geom/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/images/logo-small.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/add_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/dng/__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/alg/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/info/./__init__.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/pymod/./cleanup.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./cleanup.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./lga.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./lga.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/pymod/./py_gfx_obj.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./py_gfx_obj.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/close_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/dng/termuse.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/termuse.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/./init_context_menu.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_context_menu.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/pymod/./remote.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./remote.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/color_options_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_options_widget.py
[  0%] Built target ost_db_pymod
[  0%] Built target ost_geom_pymod
[  0%] Built target gui_images
[  0%] Built target subst___init__.py
[  0%] Built target ost_img_alg_pymod
[  0%] Built target ost_img_pymod
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec
[  0%] Built target ost_info_pymod
make  -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./hbplus.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hbplus.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/./init_menubar.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_menubar.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/critical_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/dng/superpositiondialog.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/superpositiondialog.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/pymod/./repository.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./repository.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake --color=
make  -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend
make  -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend
make  -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend
make  -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend
make  -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/color_select_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_select_widget.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake --color=
[  0%] Built target ost_conop_pymod
[  0%] Built target ost_gfx_pymod
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./msms.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./msms.py
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend.internal".
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/./init_spacenav.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_spacenav.py
Scanning dependencies of target ost_mol_pymod
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/dng/init.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/init.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/delete_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png
make  -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend
make  -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend.internal".
Scanning dependencies of target ost_mol_alg_pymod
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend.internal".
Scanning dependencies of target ost_seq_alg_pymod
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/depend.internal".
make  -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/depend.internal".
Scanning dependencies of target subst_dng
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/depend.internal".
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/combo_options_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/combo_options_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake --color=
Scanning dependencies of target subst_ost
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/actions /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend.internal".
Scanning dependencies of target ost_seq_pymod
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/./__init__.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build
make  -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/depend.internal".
Scanning dependencies of target subst_ost_startup.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./__init__.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.2.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /srv/build/openstructure-2.2.0/cmake_support/substitute.cmake
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.2.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /srv/build/openstructure-2.2.0/cmake_support/substitute.cmake
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/pymod/./__init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/./__init__.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.2.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /srv/build/openstructure-2.2.0/cmake_support/substitute.cmake
[  0%] Built target ost_io_pymod
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./tmtools.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./tmtools.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/dng/menu.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/menu.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/./init_splash.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_splash.py
make  -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/distance_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/depend.internal".
Scanning dependencies of target subst_ost_config
Scanning dependencies of target actions
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/cpk_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/cpk_widget.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build
make  -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/./views.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./views.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.2.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /srv/build/openstructure-2.2.0/cmake_support/substitute.cmake
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/pymod/./mat.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./mat.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/actions/ost-compare-structures /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  0%] Built target create_stage
make  -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./dssp.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./dssp.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/./trajectory_viewer.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./trajectory_viewer.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/find_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/geom/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake --color=
[  0%] Built target ost_mol_pymod
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/custom_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/custom_widget.py
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend.internal".
Scanning dependencies of target ost_base_pymod
make  -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/./superpose.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./superpose.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/pymod/./renumber.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./renumber.py
[  0%] Built target subst_ost
[  0%] Built target subst_dng
[  0%] Built target ost_seq_pymod
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/config /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake --color=
make  -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend
make  -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend
make  -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/pymod/./settings.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./settings.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/info/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake --color=
[  0%] Built target subst_ost_startup.py
make  -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend
[  0%] Built target ost_gui_dng_pymod
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./clustalw.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./clustalw.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/information_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend.internal".
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/./helpwidget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./helpwidget.py
Scanning dependencies of target ost_geom_headers
make  -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_editor_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_editor_widget.py
[  0%] Built target actions
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/export_helper/vector.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh
[  0%] Built target subst_ost_config
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/./qsscoring.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./qsscoring.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/depend.internal".
Scanning dependencies of target ost_config_headers
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend
make  -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend.internal".
Scanning dependencies of target ost_base_headers
Scanning dependencies of target ost_seq_headers
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/pymod/./stutil.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./stutil.py
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/depend.internal".
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/conop/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_info_headers
make  -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build
make  -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/config/./base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./base.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/export_helper/generic_property_def.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info.hh
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend.internal".
Scanning dependencies of target ost_mol_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/map_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/./table.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./table.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./utils.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./utils.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend.internal".
Scanning dependencies of target ost_bindings_headers
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/pointer_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh
[  0%] Built target ost_seq_alg_pymod
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_info_handler.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_info_handler.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./def.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./def.hh
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/src/./wrap_tmalign.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh
make  -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/./trajectory_analysis.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./trajectory_analysis.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/db/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend.internal".
Scanning dependencies of target ost_seq_alg_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/pymod/./table.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend.internal".
Scanning dependencies of target ost_conop_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/config/./config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./alignment_opts.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_error.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_error.hh
make  -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./conop.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./conop.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/menubar_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./naccess.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./naccess.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/./gosty_startup.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./gosty_startup.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_group.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_list_model.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_list_model.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./exc.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./exc.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/./structure_analysis.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./structure_analysis.py
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/depend.internal".
Scanning dependencies of target ost_db_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/pymod/./table_selector.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table_selector.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/export_helper/vec_to_list_conv.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/config/./dllexport.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./dllexport.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./sqlite_wrap.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./clip_alignment.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./processor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./processor.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./hhblits.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/rigid_body_manipulator_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png
[  0%] Built target ost_bindings_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_prop.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_preset_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_preset_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./geom.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./geom.hh
make  -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/./helix_kinks.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./helix_kinks.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/pymod/./xmlrunner.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./xmlrunner.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/test_utils/compare_files.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/test_utils/compare_files.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/config/./version.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./version.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./sqlite_conv.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh
[  0%] Built target ost_gui_pymod
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./amino_acids.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./amino_acids.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./conservation.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./hhblits2.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits2.py
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/selection_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/hsc_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/hsc_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./mat.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/./hbond.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./hbond.py
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend.internal".
Scanning dependencies of target ost_img_headers
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/pymod/./testutils.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./testutils.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/raster_image/raster_image.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./generic_property.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./generic_property.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./contact_prediction_score.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./diag.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./diag.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./hhblits3.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits3.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/show_sidebar_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend.internal".
Scanning dependencies of target ost_img_alg_headers
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./anisotropic.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./mat2.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat2.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_config_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./sequence_list.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_list.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/dispatch.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/__init__.py
make  -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./integrity_error.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./integrity_error.hh
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_group.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_group.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./linear_indexer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./linear_indexer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./model_check.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./model_check.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./contact_weight_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/site_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./blast.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./blast.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./mat3.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat3.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/immutable_preset_info_handler.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_preset_info_handler.py
[  0%] Built target ost_mol_alg_pymod
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./auto_correlate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./invalid_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./invalid_handle.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./sequence_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/depend.internal".
Scanning dependencies of target ost_io_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_item.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_item.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./paged_array.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./paged_array.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./heuristic.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./heuristic.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./distance_map.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh
make  -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/chemdict_parser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/split_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./cadscore.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./cadscore.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./clear.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clear.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/init_inspector.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/init_inspector.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./mat4.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat4.hh
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend.internal".
Scanning dependencies of target ost_mol_alg_headers
[  0%] Built target ost_base_pymod
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh
make  -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./alignment_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./ptr_observer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./ptr_observer.hh
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./svd_superpose.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./binary_container.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./binary_container.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_fw.hh
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gfx/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./compound.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./entropy.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/warning_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/star_parser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_parser.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./kclust.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./kclust.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./clip_min_max.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/inspector_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/inspector_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vec.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./log.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./log.hh
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend.internal".
Scanning dependencies of target ost_gfx_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./extract_data_helper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./global_align.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./compound_lib.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/share/icons/refresh.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/mmcif_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/pymod/./ialign.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./ialign.py
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/map_level_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/map_level_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./conjugate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vec2.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec2.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./sequence_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./log_sink.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./log_sink.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_path.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_path.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./sec_structure_segments.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./ins_del.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/mmcif_info.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/dihedral.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./convolute.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./convolute.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vec3.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec3.hh
[  0%] Built target ost_db_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./profile.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./profile.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_def.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./aligned_region.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_region.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_set.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_set.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./local_dist_diff_test.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./rule_based.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./rule_based.hh
make  -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./local_align.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh
[  0%] Built target scene_icons
[  0%] Built target ost_bindings_pymod
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake --color=
make  -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/io_profile.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/io_profile.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/config /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/remote.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/remote.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./correlate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./correlate.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vec4.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec4.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./aligned_column.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./dyn_cast.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./dyn_cast.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_factory.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./minimal_compound_lib.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./distance_test_common.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_visitor.hh
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend.internal".
Scanning dependencies of target ost_gui_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_spec.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/dcd_io.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/depend.internal".
Scanning dependencies of target ost_config
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_list_model.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_list_model.py
make  -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./cross_correlate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vecmat_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'.
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./aligned_column_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./stdint.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./distance_rmsd_test.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./compound_lib_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_verbose_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_crd_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_octree.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_option_group.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./density_slice.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh
[  0%] Built target ost_config
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vecmat2_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./invalid_sequence.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./stdint_msc.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint_msc.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./item_type.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./ring_finder.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./ring_finder.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./superpose_frames.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_pqr_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/octree_isocont.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_info_handler.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_info_handler.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./dft.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./dft.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vecmat3_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./views_from_sequences.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./range.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./range.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./geom_info_conversion.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./semiglobal_align.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./filter_clashes.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/cartoon_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_mae_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_list_model.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_list_model.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./fft.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fft.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/query_ast.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vecmat4_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh
[  0%] Built target ost_conop_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./profile_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./profile_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./item_type_cast.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type_cast.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./sequence_identity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./construct_cbeta.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_mmcif_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/custom_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./fftw_helper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/selection_tool.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/query_ast_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./circular_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./units.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./units.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./sequence_similarity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./clash_score.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/measure_tool.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/render_mode_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_mode_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/cpk_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./fill.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fill.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/query_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./constants.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./constants.hh
[  0%] Built target ost_seq_headers
[  0%] Built target ost_info_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./message.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./message.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_algorithm.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./subst_weight_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./trajectory_analysis.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/debug_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/pdb_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./filter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./filter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/render_op.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_op.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_option.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/query_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./platform.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./platform.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./variance_map.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./structure_analysis.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./fourier_filters.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_manager.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_pdb_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/render_options_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_options_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/simple_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite2.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/index.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/index.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./string_ref.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./string_ref.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/pdb_writer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_options_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/sline_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/scene_observer_impl.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_observer_impl.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite3.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./pdbize.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./pod_vector.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./pod_vector.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/type_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/manipulator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/scene_selection_helper.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_selection_helper.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./gaussian.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_sdf_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/value_holder.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./fixed_string.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./fixed_string.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./adjacency_bitmap.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./gaussian_laplacian.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/line_trace_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/simple_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/simple_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/sdf_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite2_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./algorithm.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./algorithm.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./tri_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./tri_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./highest_peak_search_3d.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/backbone_trace.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/sline_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/sline_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/mouse_event.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./hmm_score.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/sdf_writer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite3_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./boost_filesystem_helper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./contact_overlap.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./circle_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./circle_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/toolbar_options_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/toolbar_options_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/entity_detail.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./histogram.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./histogram.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/map_tool.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/save_entity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/save_entity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./aligned_cuboid.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./composite_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./composite_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./domain_find.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_seq_alg_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/trace_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/trace_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./line_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./atom_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/load_entity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_entity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vec_mat_predicates.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh
[  0%] Built target ost_base_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./similarity_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./data_algorithm.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_algorithm.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./atom_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/tube_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/tube_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./local_sigma_threshold.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/surface_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./quat.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./quat.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./accessibility.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./data_observer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_observer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/uniform_color_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/uniform_color_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/connect_renderer_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./atom_view.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_view.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/background_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./mask_image.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/load_surface.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_surface.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./transform.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./transform.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./sec_struct.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./data_types.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_types.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./bond_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/visibility_op.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/visibility_op.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/conservation_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/mapped_property.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./negate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./negate.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/surface_io_msms_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./point_cloud.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./point_cloud.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./data.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./nonstandard.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./bond_table.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_table.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/line_trace_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/line_trace_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./normalizer_factory.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/pdb_str.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./debug.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./debug.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./molck.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./molck.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/secstr_row.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chain_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/tabulated_trig.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./norm.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/wireframe_widget.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/wireframe_widget.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/stereochemical_params_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./dllexport.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./dllexport.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./find_membrane.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./normalizer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/fast_spheres.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chain_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/query_editor.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/query_editor.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/load_map.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/load_map.hh
[  0%] Built target ost_geom_headers
make  -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/geom/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./entity_to_density.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./extent_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_iterator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chain_view.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_view.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./norm_linear.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_df3_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/depend.internal".
Scanning dependencies of target ost_geom
[  0%] Built target ost_gui_scene_pymod
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./extent_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_mask.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./norm_log.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chain_type.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_type.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/line_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/image_format.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/image_format.hh
[  0%] Built target ost_mol_alg_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./extent.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./norm_od.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chem_class.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_class.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/custom_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_dx_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_factory.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_factory.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chem_type.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_type.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./power_spectrum.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/cpk_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_spi_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/mat2.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/mat3.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/mat4.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/vec3.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/composite2.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/vecmat2_op.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/vecmat3_op.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/vecmat4_op.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/composite3.cc
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_row.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./coord_group.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_group.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./randomize.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./randomize.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/simple_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/composite2_op.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_situs_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./coord_source.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_source.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_handle_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/sline_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./smooth_mask_image.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/line_trace_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./in_mem_coord_source.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./stat.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_mrc_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./coord_frame.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_frame.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/cartoon_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./stat_accumulator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_dat_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/trace_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/tick_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./editor_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_list.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_list.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./stat_min_max.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_ipl_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/title_row.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_state_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./editor_type_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./threshold.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./threshold.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/by_element_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_state.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./mol.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./mol.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./transcendentals.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_nanoscope_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/by_chain_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./transform.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_png_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/uniform_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./inverted_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./inverted_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./transform_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_dm3_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./map.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./map.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./alg_transform.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask_base_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/entity_view_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_observer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./alg_mirror.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/tiff_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/tiff_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/completer_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_observer_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./alg_shift.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/jpk_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/jpk_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./discrete_shrink.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_property_mapper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/sequence_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_visitor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/map_handle_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/gutter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./transformation_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_view.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_view.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/fasta_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/path_completer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./render_pass.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_pass.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./transformations.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformations.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/pir_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_context_parser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./bitmap_io.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_visitor_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./fractional_shift.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./normalizer_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./collada_exporter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_completer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/promod_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./handle_type_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./normalizer_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/profile_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./color.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./color.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./ics_editor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./ics_editor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./polar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./polar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./null_data.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./null_data.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./entity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/hhm_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./line_average.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_average.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./not_connected_error.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./entity_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/pssm_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./observable.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./observable.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./rscrosscorr.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./property_id.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./property_id.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/clustal_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./paste_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./paste_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_tokenizer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gl_helper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/load.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/load.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./query.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./peak.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./peak.hh
[  1%] Built target ost_img_alg_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/save.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/save.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./query_error.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_error.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./phase.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./phase.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/composite3_op.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./query_state.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_state.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./binary_data_sink.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./physical_units.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./physical_units.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./io_manager.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_manager.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./residue_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./pixel_sampling.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_node_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./binary_data_source.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_source.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./residue_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./point_list.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point_list.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_node_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./residue_prop.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_prop.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./point.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/shell_history.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_object_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./container_serialization.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./container_serialization.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./residue_view.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_view.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./polygon_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./polygon_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/state_machine.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_object.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./sec_structure.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./sec_structure.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./swap_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./swap_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/state.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./progress.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./progress.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_object_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./spatial_organizer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./io_utils.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_utils.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/transition.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./size.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./size.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_prim.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./surface.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./io_exception.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_exception.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./spherical_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./spherical_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./symmetry_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./convert.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./convert.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./surface_builder.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_builder.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./util.cc /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/button_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_test_object.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./converting_streams.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./converting_streams.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./builder.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./builder.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/drop_box.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./glwin_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./formatted_line.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./formatted_line.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./surface_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./value_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./value_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./input.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./input.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./surface_prop.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_prop.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/chemdict_parser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./vecmat.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./vecmat.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_manager.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./prim_list.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./prim_list.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./torsion_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/star_parser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./star_parser.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/bottom_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask_info_convert.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./scene.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./transfer_connectivity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/mmcif_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/button_box.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_box.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  1%] Built target ost_img_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./selection.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./selection.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./query_view_wrapper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/mmcif_info.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_info.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/event_button.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/event_button.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/io_profile.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_profile.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./surface.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./surface.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/quat.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/quat.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_widget_container.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./view_type_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/dcd_io.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./dcd_io.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./texture.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./texture.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./vertex_array.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/side_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_crd_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./xcs_editor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/splitter_panel_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./vertex_array_helper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_pqr_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./scene_observer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./bounding_box.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bounding_box.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_mae_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/context_menu.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gl_include.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_include.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./transform.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transform.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./glext_include.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glext_include.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/custom_part_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/pdb_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_reader.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./render_mode.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_mode.hh
[  1%] Built target ost_mol_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_pdb_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./material.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./material.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gradient.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/pdb_writer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_writer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/transform.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/transform.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/entity_part_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/gfx_scene_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_sdf_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gradient_manager.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/sdf_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/label_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./primitives.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./primitives.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/sdf_writer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_writer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/root_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./povray_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/render_mode_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/save_entity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save_entity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./povray.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/load_entity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_entity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/surface_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./exporter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./exporter_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/load_surface.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_surface.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/surface_io_msms_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gost_exporter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/pdb_str.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_str.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/messages/message_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./map_iso.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/stereochemical_params_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/sequence_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/messages/log_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./map_slab.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_slab.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/argand.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/fasta_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./map_iso_prop.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/pir_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  1%] Built target ost_gfx_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/promod_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/profile_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/aligned_cuboid.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/draw_overlay.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/hhm_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/drawing_functions.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/pssm_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/fft_panel.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/clustal_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/info_panel.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/load.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/save.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/img2qt.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/mask_overlay.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/load_map.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_map.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_df3_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/null_overlay.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/image_format.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./image_format.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_dx_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_spi_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_situs_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_mrc_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_dat_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_ipl_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_jpk_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/strategies.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_nanoscope_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/strategies_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_png_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_dm3_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/viewer_normalizer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_tiff_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./file_browser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_browser.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./file_type_dialog.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/tiff_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./tiff_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/jpk_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./jpk_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./file_viewer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_viewer.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/src/point_cloud.cc
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./gl_canvas.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh
[  1%] Built target ost_io_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./gl_win.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_win.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./scene_menu.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_menu.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./gosty_app.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gosty_app.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./admin.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./admin.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./main.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./main_area.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_area.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./perspective.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./perspective.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./scene_selection.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_selection.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./main_window.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_window.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./thin_splitter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./widget_geom_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./widget_pool.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_pool.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./widget_registry.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_registry.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./widget_state_saver.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./file_loader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_loader.hh
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  1%] Built target ost_gui_headers
[  1%] Linking CXX shared library ../../../stage/lib/libost_geom.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.2 -o ../../../stage/lib/libost_geom.so.2.2.0 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2 ../../../stage/lib/libost_geom.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  1%] Built target ost_geom
make  -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend
make  -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/geom/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/depend.internal".
Scanning dependencies of target _ost_geom
Scanning dependencies of target ost_base
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o
[  2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o
[  2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o
[  2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o
[  2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o
[  2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/units.cc.o
[  2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o
[  2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/message.cc.o
[  2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o
[  2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/generic_property.cc.o -c /srv/build/openstructure-2.2.0/modules/base/src/generic_property.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/log.cc.o -c /srv/build/openstructure-2.2.0/modules/base/src/log.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/log_sink.cc.o -c /srv/build/openstructure-2.2.0/modules/base/src/log_sink.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/profile.cc.o -c /srv/build/openstructure-2.2.0/modules/base/src/profile.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/units.cc.o -c /srv/build/openstructure-2.2.0/modules/base/src/units.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/string_ref.cc.o -c /srv/build/openstructure-2.2.0/modules/base/src/string_ref.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/platform.cc.o -c /srv/build/openstructure-2.2.0/modules/base/src/platform.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/message.cc.o -c /srv/build/openstructure-2.2.0/modules/base/src/message.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -c /srv/build/openstructure-2.2.0/modules/base/src/test_utils/compare_files.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -c /srv/build/openstructure-2.2.0/modules/base/src/boost_filesystem_helper.cc
[  2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o
[  2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o
[  2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o
[  2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o
[  2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o
[  2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec2.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vec2.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vecmat2_op.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vec3.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vecmat3_op.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vec4.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vec4.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vecmat4_op.cc
[  2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/wrap_geom.cc
[  2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat2.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_mat2.cc
[  2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat3.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_mat3.cc
[  3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_mat4.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_mat4.cc
[  3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite2.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_composite2.cc
[  3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite3.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_composite3.cc
[  3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_composite2_op.cc
[  3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_composite3_op.cc
[  3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_quat.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_quat.cc
[  3%] Linking CXX shared library ../../../stage/lib/libost_base.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_base.so.2.2 -o ../../../stage/lib/libost_base.so.2.2.0 CMakeFiles/ost_base.dir/generic_property.cc.o CMakeFiles/ost_base.dir/log.cc.o CMakeFiles/ost_base.dir/log_sink.cc.o CMakeFiles/ost_base.dir/profile.cc.o CMakeFiles/ost_base.dir/units.cc.o CMakeFiles/ost_base.dir/string_ref.cc.o CMakeFiles/ost_base.dir/platform.cc.o CMakeFiles/ost_base.dir/message.cc.o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_base.so.2.2 ../../../stage/lib/libost_base.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  3%] Built target ost_base
make  -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/info/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/depend.internal".
Scanning dependencies of target ost_info
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/info/src/info_impl.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vecmat2_op.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vecmat3_op.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vecmat4_op.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vec4.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vec3.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_vec2.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/wrap_geom.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_mat2.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_mat3.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_composite3.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_composite2.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_composite2_op.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_mat4.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_composite3_op.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[  3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/pymod/export_transform.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_quat.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[  3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/info/src/info_handle.cc
[  3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_group.cc.o -c /srv/build/openstructure-2.2.0/modules/info/src/info_group.cc
[  3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_item.cc.o -c /srv/build/openstructure-2.2.0/modules/info/src/info_item.cc
[  3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_path.cc.o -c /srv/build/openstructure-2.2.0/modules/info/src/info_path.cc
[  3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_set.cc.o -c /srv/build/openstructure-2.2.0/modules/info/src/info_set.cc
[  3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /srv/build/openstructure-2.2.0/modules/info/src/info_visitor.cc
[  3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /srv/build/openstructure-2.2.0/modules/info/src/geom_info_conversion.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/geom/pymod/export_transform.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[  5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /srv/build/openstructure-2.2.0/modules/info/src/info_verbose_visitor.cc
[  5%] Linking CXX shared library ../../../stage/lib/libost_info.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.2 -o ../../../stage/lib/libost_info.so.2.2.0 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_info.so.2.2 ../../../stage/lib/libost_info.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  5%] Built target ost_info
make  -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend
make  -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/depend.internal".
Scanning dependencies of target ost_img
Scanning dependencies of target ost_mol
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  5%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o
[  5%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o
[  6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/circle_mask.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/circle_mask.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/composite_mask.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/composite_mask.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/data_algorithm.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data_observer.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/data_observer.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/data.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/data.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent_iterator.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/extent_iterator.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/extent_mask.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/extent.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/extent.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_factory.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/image_factory.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/image_handle.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/image_impl.cc
[  7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_list.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/image_list.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/inverted_mask.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/map.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/map.cc
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_base.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/atom_base.cc
[  7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_base.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/mask_base.cc
[  7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_op.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/mask_op.cc
[  7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/mask.cc
[  7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o
[  7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/observable.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/observable.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/paste_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/paste_impl.cc
[  7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/peak.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/peak.cc
[  7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/atom_handle.cc
[  7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/atom_view.cc
[  7%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/geom/_ost_geom.so
[  7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_geom.dir/link.txt --verbose=1
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/bond_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/bond_handle.cc
[  8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/chain_base.cc
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../stage/lib/python3.9/dist-packages/ost/geom/_ost_geom.so CMakeFiles/_ost_geom.dir/export_vec2.cc.o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o CMakeFiles/_ost_geom.dir/export_vec3.cc.o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o CMakeFiles/_ost_geom.dir/export_vec4.cc.o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o CMakeFiles/_ost_geom.dir/export_mat2.cc.o CMakeFiles/_ost_geom.dir/export_mat3.cc.o CMakeFiles/_ost_geom.dir/export_mat4.cc.o CMakeFiles/_ost_geom.dir/export_composite2.cc.o CMakeFiles/_ost_geom.dir/export_composite3.cc.o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o CMakeFiles/_ost_geom.dir/export_quat.cc.o CMakeFiles/_ost_geom.dir/export_transform.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so 
[  8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/chain_handle.cc
[  8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/chain_view.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/phase.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/phase.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/geom/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/geom/./__init__.pyc\",\"__init__.py\",doraise=True)"
[  8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/chain_type.cc
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  8%] Built target _ost_geom
make  -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/depend.internal".
Scanning dependencies of target _ost_base
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/coord_frame.cc
[  8%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/wrap_base.cc.o -c /srv/build/openstructure-2.2.0/modules/base/pymod/wrap_base.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/physical_units.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/physical_units.cc
In file included from /usr/include/boost/bind.hpp:30,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/src/chain_view.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[  8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/coord_group.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o
[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/pixel_sampling.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/pixel_sampling.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/point_list.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/point_list.cc
[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/point.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/point.cc
[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/polygon_mask.cc
[ 10%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_logger.cc.o -c /srv/build/openstructure-2.2.0/modules/base/pymod/export_logger.cc
[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/progress.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/progress.cc
[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/editor_base.cc
[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_base.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/entity_base.cc
[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/entity_handle.cc
[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/size.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/size.cc
[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/entity_observer.cc
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/entity_property_mapper.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/spherical_mask.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/spherical_mask.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/mask_info_convert.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/mask_info_convert.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_factory.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/index.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/base/pymod/wrap_base.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/entity_view.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/src/raster_image/raster_image.cc
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/entity_visitor.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/entity_visitor.cc
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/ics_editor.cc
In file included from /usr/include/boost/bind.hpp:30,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/src/entity_view.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/not_connected_error.cc
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/property_id.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/property_id.cc
In file included from /usr/include/boost/bind.hpp:29,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/src/chain_view.cc:21:
/usr/include/boost/bind/bind.hpp: In function ‘boost::_bi::bind_t<bool, boost::_bi::equal, boost::_bi::list2<boost::_bi::bind_t<R, F, L>, typename boost::_bi::add_value<A4>::type> > boost::_bi::operator==(const boost::_bi::bind_t<R, F, L>&, A2) [with R = const ost::mol::ResNum&; F = boost::_mfi::cmf0<const ost::mol::ResNum&, ost::mol::ResidueBase>; L = boost::_bi::list1<boost::arg<1> >; A2 = ost::mol::ResNum]’:
/usr/include/boost/bind/bind.hpp:1777:1: note: parameter passing for argument of type ‘ost::mol::ResNum’ changed in GCC 9.1
 1777 | BOOST_BIND_OPERATOR( ==, equal )
      | ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/base/pymod/export_logger.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/query.cc
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_error.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/query_error.cc
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_state.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/query_state.cc
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_base.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/residue_base.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/residue_handle.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/residue_view.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/residue_view.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/surface_builder.cc
In file included from /usr/include/boost/bind.hpp:30,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/src/residue_view.cc:22:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/surface_handle.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/transfer_connectivity.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/torsion_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/torsion_handle.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/query_view_wrapper.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/view_op.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/view_op.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/coord_source.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/coord_source.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/in_mem_coord_source.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/bounding_box.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/bounding_box.cc
[ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/xcs_editor.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/xcs_editor.cc
[ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.cc
[ 14%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /srv/build/openstructure-2.2.0/modules/base/pymod/export_range.cc
[ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.cc
[ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl.cc
[ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/dihedral.cc
[ 15%] Linking CXX shared library ../../../../stage/lib/libost_img.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_img.so.2.2 -o ../../../../stage/lib/libost_img.so.2.2.0 CMakeFiles/ost_img.dir/circle_mask.cc.o CMakeFiles/ost_img.dir/composite_mask.cc.o CMakeFiles/ost_img.dir/data_algorithm.cc.o CMakeFiles/ost_img.dir/data_observer.cc.o CMakeFiles/ost_img.dir/data.cc.o CMakeFiles/ost_img.dir/extent_iterator.cc.o CMakeFiles/ost_img.dir/extent_mask.cc.o CMakeFiles/ost_img.dir/extent.cc.o CMakeFiles/ost_img.dir/image_factory.cc.o CMakeFiles/ost_img.dir/image_handle.cc.o CMakeFiles/ost_img.dir/image_impl.cc.o CMakeFiles/ost_img.dir/image_list.cc.o CMakeFiles/ost_img.dir/inverted_mask.cc.o CMakeFiles/ost_img.dir/map.cc.o CMakeFiles/ost_img.dir/mask_base.cc.o CMakeFiles/ost_img.dir/mask_op.cc.o CMakeFiles/ost_img.dir/mask.cc.o CMakeFiles/ost_img.dir/observable.cc.o CMakeFiles/ost_img.dir/paste_impl.cc.o CMakeFiles/ost_img.dir/peak.cc.o CMakeFiles/ost_img.dir/phase.cc.o CMakeFiles/ost_img.dir/physical_units.cc.o CMakeFiles/ost_img.dir/pixel_sampling.cc.o CMakeFiles/ost_img.dir/point_list.cc.o CMakeFiles/ost_img.dir/point.cc.o CMakeFiles/ost_img.dir/polygon_mask.cc.o CMakeFiles/ost_img.dir/progress.cc.o CMakeFiles/ost_img.dir/size.cc.o CMakeFiles/ost_img.dir/spherical_mask.cc.o CMakeFiles/ost_img.dir/mask_info_convert.cc.o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o CMakeFiles/ost_img.dir/image_state/index.cc.o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2 ../../../../stage/lib/libost_img.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 15%] Built target ost_img
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend.internal".
Scanning dependencies of target ost_img_alg
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 15%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/anisotropic.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log_sink.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log.hh:25,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log_sink.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log.hh:25,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/query_ast.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/query_impl.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.cc
[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl.cc
[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/base/pymod/export_range.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_prop.cc
[ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/auto_correlate.cc
In file included from /usr/include/boost/bind.hpp:29,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.cc:26:
/usr/include/boost/bind/bind.hpp: In function ‘boost::_bi::bind_t<bool, boost::_bi::equal, boost::_bi::list2<boost::_bi::bind_t<R, F, L>, typename boost::_bi::add_value<A4>::type> > boost::_bi::operator==(const boost::_bi::bind_t<R, F, L>&, A2) [with R = const ost::mol::ResNum&; F = boost::_mfi::cmf0<const ost::mol::ResNum&, ost::mol::impl::ResidueImpl>; L = boost::_bi::list1<boost::arg<1> >; A2 = ost::mol::ResNum]’:
/usr/include/boost/bind/bind.hpp:1777:1: note: parameter passing for argument of type ‘ost::mol::ResNum’ changed in GCC 9.1
 1777 | BOOST_BIND_OPERATOR( ==, equal )
      | ^~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/convolute.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/convolute.cc
[ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/correlate.cc
[ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/cross_correlate.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log_sink.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/log.hh:25,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 16%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -D_ost_base_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/_ost_base.dir/export_units.cc.o -c /srv/build/openstructure-2.2.0/modules/base/pymod/export_units.cc
[ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/density_slice.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/density_slice.cc
[ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/dft.cc
[ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fft.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/fft.cc
[ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/fourier_filters.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/gaussian.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/gaussian_gradient_magnitude.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/gaussian_laplacian.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/highest_peak_search_3d.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/histogram.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/histogram.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/line_iterator.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/base/pymod/export_units.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/local_sigma_threshold.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/mask_image.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/mask_image.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/normalizer.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/normalizer.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/normalizer_factory.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/norm_linear.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_log.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/norm_log.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/norm_od.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/norm_od.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/power_spectrum.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/randomize.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/randomize.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/smooth_mask_image.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/stat.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/stat.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/stat_min_max.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/alg_transform.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/alg_mirror.cc
[ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/alg_shift.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/threshold.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/threshold.cc
[ 20%] Linking CXX shared library ../../../../stage/lib/libost_mol.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.2 -o ../../../../stage/lib/libost_mol.so.2.2.0 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/discrete_shrink.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/transformation_base.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/transformations.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/transformations.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/fractional_shift.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2 ../../../../stage/lib/libost_mol.so
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/polar.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/polar.cc
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 20%] Built target ost_mol
make  -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/depend.internal".
Scanning dependencies of target ost_seq
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/rscrosscorr.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/src/line_average.cc
[ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl.cc
[ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/src/sequence_handle.cc
[ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/aligned_region.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/src/aligned_region.cc
[ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/aligned_column.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/src/aligned_column.cc
[ 20%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/_ost_base.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../stage/lib/python3.9/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_base.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so 
[ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/src/sequence_list.cc
[ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/src/alignment_handle.cc
[ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/src/sequence_op.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/base/pymod/settings.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./settings.pyc\",\"settings.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/base/pymod/stutil.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./stutil.pyc\",\"stutil.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/base/pymod/table.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table.pyc\",\"table.py\",doraise=True)"
[ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/src/views_from_sequences.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/base/pymod/table_selector.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/base/pymod/xmlrunner.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/base/pymod/testutils.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/./testutils.pyc\",\"testutils.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 20%] Built target _ost_base
make  -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/info/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/depend.internal".
Scanning dependencies of target _ost_info
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 21%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c /srv/build/openstructure-2.2.0/modules/info/pymod/wrap_info.cc
[ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/src/profile_handle.cc
In file included from /usr/include/boost/bind.hpp:30,
                 from /srv/build/openstructure-2.2.0/modules/seq/base/src/sequence_op.cc:22:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 23%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_img_alg.so.2.2 -o ../../../../stage/lib/libost_img_alg.so.2.2.0 CMakeFiles/ost_img_alg.dir/anisotropic.cc.o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o CMakeFiles/ost_img_alg.dir/convolute.cc.o CMakeFiles/ost_img_alg.dir/correlate.cc.o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o CMakeFiles/ost_img_alg.dir/density_slice.cc.o CMakeFiles/ost_img_alg.dir/dft.cc.o CMakeFiles/ost_img_alg.dir/fft.cc.o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o CMakeFiles/ost_img_alg.dir/gaussian.cc.o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img_alg.so.2.2 ../../../../stage/lib/libost_img_alg.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 23%] Built target ost_img_alg
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/info/pymod/wrap_info.cc:27:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 23%] Linking CXX shared library ../../../../stage/lib/libost_seq.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_seq.so.2.2 -o ../../../../stage/lib/libost_seq.so.2.2.0 CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o CMakeFiles/ost_seq.dir/sequence_handle.cc.o CMakeFiles/ost_seq.dir/aligned_region.cc.o CMakeFiles/ost_seq.dir/aligned_column.cc.o CMakeFiles/ost_seq.dir/sequence_list.cc.o CMakeFiles/ost_seq.dir/alignment_handle.cc.o CMakeFiles/ost_seq.dir/sequence_op.cc.o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o CMakeFiles/ost_seq.dir/profile_handle.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2 ../../../../stage/lib/libost_seq.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 23%] Built target ost_seq
make  -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend
make  -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/db/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend.internal".
Scanning dependencies of target ost_bindings
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend.internal".
Scanning dependencies of target ost_db
Scanning dependencies of target ost_seq_alg
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o
[ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 24%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build
[ 24%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o
[ 24%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c /srv/build/openstructure-2.2.0/modules/db/src/linear_indexer.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -c /srv/build/openstructure-2.2.0/modules/db/src/sqlite_wrap.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/c++ -DOST_MODULE_OST_BINDINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_bindings_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -c /srv/build/openstructure-2.2.0/modules/bindings/src/wrap_tmalign.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/binary_container.cc.o -c /srv/build/openstructure-2.2.0/modules/db/src/binary_container.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -c /srv/build/openstructure-2.2.0/modules/db/src/extract_data_helper.cc
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o
[ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o
[ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o
[ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o
[ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o
[ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o
[ 24%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/clip_alignment.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/conservation.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/contact_prediction_score.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/contact_weight_matrix.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/distance_map.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/entropy.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/global_align.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/ins_del.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/local_align.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/local_align.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/merge_pairwise_alignments.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/pair_subst_weight_matrix.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/semiglobal_align.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/sequence_identity.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/sequence_similarity.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/subst_weight_matrix.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/variance_map.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/hmm_pseudo_counts.cc
[ 25%] Linking CXX shared library ../../../stage/lib/libost_db.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_db.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_db.so.2.2 -o ../../../stage/lib/libost_db.so.2.2.0 CMakeFiles/ost_db.dir/sqlite_wrap.cc.o CMakeFiles/ost_db.dir/linear_indexer.cc.o CMakeFiles/ost_db.dir/binary_container.cc.o CMakeFiles/ost_db.dir/extract_data_helper.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/src/hmm_score.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_db.so.2.2.0 ../../../stage/lib/libost_db.so.2.2 ../../../stage/lib/libost_db.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 25%] Built target ost_db
make  -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/conop/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/depend.internal".
Scanning dependencies of target ost_conop
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 25%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o
[ 25%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/processor.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/processor.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/amino_acids.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/amino_acids.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/conop.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/conop.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/minimal_compound_lib.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/compound_lib_base.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/heuristic.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/heuristic.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/diag.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/diag.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/rule_based.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/rule_based.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/model_check.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/model_check.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/compound.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/compound_lib.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/compound_lib.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_conop.dir/ring_finder.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/ring_finder.cc
[ 26%] Linking CXX shared library ../../../stage/lib/libost_bindings.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_bindings.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_bindings.so.2.2 -o ../../../stage/lib/libost_bindings.so.2.2.0 CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so 
[ 28%] Linking CXX shared library ../../../../stage/lib/libost_seq_alg.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_seq_alg.so.2.2 -o ../../../../stage/lib/libost_seq_alg.so.2.2.0 CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o CMakeFiles/ost_seq_alg.dir/conservation.cc.o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o CMakeFiles/ost_seq_alg.dir/entropy.cc.o CMakeFiles/ost_seq_alg.dir/global_align.cc.o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o CMakeFiles/ost_seq_alg.dir/local_align.cc.o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_bindings.so.2.2.0 ../../../stage/lib/libost_bindings.so.2.2 ../../../stage/lib/libost_bindings.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 28%] Built target ost_bindings
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_seq_alg.so.2.2 ../../../../stage/lib/libost_seq_alg.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 28%] Built target ost_seq_alg
[ 28%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/info/_ost_info.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_info.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../stage/lib/python3.9/dist-packages/ost/info/_ost_info.so CMakeFiles/_ost_info.dir/wrap_info.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/info/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/info/./__init__.pyc\",\"__init__.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 28%] Built target _ost_info
make  -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend
make  -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend.internal".
Scanning dependencies of target _ost_mol
Scanning dependencies of target _ost_img
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o
[ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o
[ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o
[ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o
[ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o
[ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o
[ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o
[ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o
[ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o
[ 29%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o
[ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o
[ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o
[ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_data.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_data.cc
[ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_data_algorithm.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_extent.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_extent.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_image_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_image_handle.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_peak.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_peak.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_phase.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_phase.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_point.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_point.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_progress.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_progress.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_raster_image.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_raster_image.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_size.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_size.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_mask.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_mask.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_image_list.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_image_list.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/export_map.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_map.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img.dir/wrap_img.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/pymod/wrap_img.cc
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_atom.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_atom.cc
[ 30%] Linking CXX shared library ../../../stage/lib/libost_conop.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_conop.so.2.2 -o ../../../stage/lib/libost_conop.so.2.2.0 CMakeFiles/ost_conop.dir/processor.cc.o CMakeFiles/ost_conop.dir/amino_acids.cc.o CMakeFiles/ost_conop.dir/conop.cc.o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o CMakeFiles/ost_conop.dir/heuristic.cc.o CMakeFiles/ost_conop.dir/diag.cc.o CMakeFiles/ost_conop.dir/rule_based.cc.o CMakeFiles/ost_conop.dir/model_check.cc.o CMakeFiles/ost_conop.dir/compound.cc.o CMakeFiles/ost_conop.dir/compound_lib.cc.o CMakeFiles/ost_conop.dir/ring_finder.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2 ../../../stage/lib/libost_conop.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 30%] Built target ost_conop
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend.internal".
Scanning dependencies of target ost_mol_alg
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/svd_superpose.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_phase.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_progress.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_image_handle.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_mask.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/wrap_img.cc:27:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_image_list.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_map.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_point.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_data.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_size.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_peak.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_extent.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_data_algorithm.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/base/pymod/export_raster_image.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_atom.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind.hpp:30,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/src/svd_superpose.cc:22:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/clash_score.cc
[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/sec_structure_segments.cc
[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/local_dist_diff_test.cc
[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/distance_test_common.cc
[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/distance_rmsd_test.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/superpose_frames.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/filter_clashes.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/construct_cbeta.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/trajectory_analysis.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/structure_analysis.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/consistency_checks.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/pdbize.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/adjacency_bitmap.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/contact_overlap.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/domain_find.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/similarity_matrix.cc
[ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/accessibility.cc
[ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/sec_struct.cc
[ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/nonstandard.cc
[ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/molck.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/molck.cc
[ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/find_membrane.cc
[ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/entity_to_density.cc
make  -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gfx/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/depend.internal".
Scanning dependencies of target ost_gfx
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/bitmap_io.cc
[ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/exporter.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/exporter.cc
[ 33%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/img/_ost_img.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.9/dist-packages/ost/img/_ost_img.so CMakeFiles/_ost_img.dir/export_data.cc.o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o CMakeFiles/_ost_img.dir/export_extent.cc.o CMakeFiles/_ost_img.dir/export_image_handle.cc.o CMakeFiles/_ost_img.dir/export_peak.cc.o CMakeFiles/_ost_img.dir/export_phase.cc.o CMakeFiles/_ost_img.dir/export_point.cc.o CMakeFiles/_ost_img.dir/export_progress.cc.o CMakeFiles/_ost_img.dir/export_raster_image.cc.o CMakeFiles/_ost_img.dir/export_size.cc.o CMakeFiles/_ost_img.dir/export_mask.cc.o CMakeFiles/_ost_img.dir/export_image_list.cc.o CMakeFiles/_ost_img.dir/export_map.cc.o CMakeFiles/_ost_img.dir/wrap_img.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/img/base/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/./__init__.pyc\",\"__init__.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 33%] Built target _ost_img
make  -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend.internal".
Scanning dependencies of target _ost_img_alg
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 33%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/pymod/wrap_alg.cc
[ 33%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/pymod/export_filter.cc
[ 33%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/pymod/export_normalizer.cc
[ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o
[ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/collada_exporter.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/color.cc
[ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/primitives.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/primitives.cc
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/entity.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/entity.cc
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/symmetry_node.cc
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/gfx_node.cc
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_object.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/gfx_object.cc
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o
[ 34%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/gfx_prim.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/pymod/export_transcendentals.cc
In file included from /usr/include/boost/bind.hpp:30,
                 from /srv/build/openstructure-2.2.0/modules/gfx/src/gfx_node.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/gfx_test_object.cc
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/input.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/input.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/alg/pymod/wrap_alg.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/alg/pymod/export_filter.cc:27:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/alg/pymod/export_normalizer.cc:27:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/prim_list.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/prim_list.cc
[ 34%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_atom_view.cc
[ 34%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_bond.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_bond.cc
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/scene.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/scene.cc
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/selection.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/selection.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/surface.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/surface.cc
In file included from /usr/include/boost/bind.hpp:30,
                 from /srv/build/openstructure-2.2.0/modules/gfx/src/scene.cc:33:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/alg/pymod/export_transcendentals.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/pymod/export_polar.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gradient.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/gradient.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/gradient_manager.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/vertex_array.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/vertex_array.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/vertex_array_helper.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_atom_view.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_bond.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/material.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/material.cc
[ 35%] Linking CXX shared library ../../../../stage/lib/libost_mol_alg.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/atom_scattering_properties.txt /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/atom_scattering_properties.txt
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/stereo_chemical_props.txt /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/stereo_chemical_props.txt
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_mol_alg.so.2.2 -o ../../../../stage/lib/libost_mol_alg.so.2.2.0 CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o CMakeFiles/ost_mol_alg.dir/molck.cc.o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libsqlite3.so 
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/povray.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/povray.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/gost_exporter.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2 ../../../../stage/lib/libost_mol_alg.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 35%] Built target ost_mol_alg
make  -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/depend.internal".
Scanning dependencies of target ost_io
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/texture.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/texture.cc
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 35%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/io_manager.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/io_manager.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/color_op.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/by_element_color_op.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/img/alg/pymod/export_polar.cc:24:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/by_chain_color_op.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/uniform_color_op.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_color_op.cc
/srv/build/openstructure-2.2.0/modules/gfx/src/vertex_array.cc:1311:8: warning: ‘geom::Vec3 ost::gfx::{anonymous}::make_aaline_edge(const geom::Vec2&, const geom::Vec2&, float)’ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-function-Wunused-function]8;;]
 1311 |   Vec3 make_aaline_edge(const Vec2& c1, const Vec2& c0, float s)
      |        ^~~~~~~~~~~~~~~~
/srv/build/openstructure-2.2.0/modules/gfx/src/vertex_array.cc:1239:8: warning: ‘void ost::gfx::{anonymous}::render_aalines(ost::gfx::{anonymous}::AALineList&, float, float)’ defined but not used []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-function-Wunused-function]8;;]
 1239 |   void render_aalines(AALineList& line_list, float w, float r)
      |        ^~~~~~~~~~~~~~
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/entity_view_color_op.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/basic_gradient_color_op.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_level_color_op.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/entity_detail.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/cartoon_renderer.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/custom_renderer.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/cpk_renderer.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/debug_renderer.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/simple_renderer.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/sline_renderer.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/line_trace_renderer.cc
[ 38%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_chain.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_chain.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/backbone_trace.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/connect_renderer_base.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer_base.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/mapped_property.cc
[ 38%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/convert.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/convert.cc
/srv/build/openstructure-2.2.0/modules/io/src/convert.cc: In static member function ‘static float ost::io::{anonymous}::ConvertHelper<1, 2, float>::Convert(const float&)’:
/srv/build/openstructure-2.2.0/modules/io/src/convert.cc:346:5: warning: dereferencing type-punned pointer will break strict-aliasing rules []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstrict-aliasing-Wstrict-aliasing]8;;]
  346 |     reinterpret_cast<unsigned short *>(&result)[0]=reinterpret_cast<unsigned short *>(&tmp)[1];
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/srv/build/openstructure-2.2.0/modules/io/src/convert.cc:347:52: warning: dereferencing type-punned pointer will break strict-aliasing rules []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstrict-aliasing-Wstrict-aliasing]8;;]
  347 |     reinterpret_cast<unsigned short *>(&result)[1]=reinterpret_cast<unsigned short *>(&tmp)[0];
      |                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/srv/build/openstructure-2.2.0/modules/io/src/convert.cc: In static member function ‘static void ost::io::{anonymous}::ConvertHelper<1, 2, float>::ConvertIP(float*)’:
/srv/build/openstructure-2.2.0/modules/io/src/convert.cc:355:50: warning: dereferencing type-punned pointer will break strict-aliasing rules []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstrict-aliasing-Wstrict-aliasing]8;;]
  355 |     reinterpret_cast<unsigned short *>(value)[1]=reinterpret_cast<unsigned short *>(&tmp)[0];
      |                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/srv/build/openstructure-2.2.0/modules/io/src/convert.cc: In static member function ‘static float ost::io::{anonymous}::ConvertHelper<2, 1, float>::Convert(const float&)’:
/srv/build/openstructure-2.2.0/modules/io/src/convert.cc:367:5: warning: dereferencing type-punned pointer will break strict-aliasing rules []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstrict-aliasing-Wstrict-aliasing]8;;]
  367 |     reinterpret_cast<unsigned short *>(&tmp)[0]=reinterpret_cast<const unsigned short *>(&value)[1];
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/srv/build/openstructure-2.2.0/modules/io/src/convert.cc: In static member function ‘static void ost::io::{anonymous}::ConvertHelper<2, 1, float>::ConvertIP(float*)’:
/srv/build/openstructure-2.2.0/modules/io/src/convert.cc:375:5: warning: dereferencing type-punned pointer will break strict-aliasing rules []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstrict-aliasing-Wstrict-aliasing]8;;]
  375 |     reinterpret_cast<unsigned short *>(&tmp)[0]=reinterpret_cast<unsigned short *>(value)[1];
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/tabulated_trig.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/fast_spheres.cc
[ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/io_utils.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/io_utils.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/render_options.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/line_render_options.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_chain.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_crd_handler.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/custom_render_options.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/cpk_render_options.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/simple_render_options.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/sline_render_options.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/line_trace_render_options.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/cartoon_render_options.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/trace_render_options.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/map_handle_color_op.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/map_iso.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/map_iso.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/map_slab.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/map_slab.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_o.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_octree.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/src/impl/octree_isocont.cc
[ 42%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_chain_view.cc
[ 42%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/img/alg/_ost_img_alg.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.9/dist-packages/ost/img/alg/_ost_img_alg.so CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
[ 42%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_coord_group.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/img/alg/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/img/alg/./__init__.pyc\",\"__init__.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 42%] Built target _ost_img_alg
[ 42%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_coord_frame.cc
[ 42%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_editors.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_editors.cc
[ 42%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_entity.cc
[ 42%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_entity_view.cc
[ 42%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_property_id.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_property_id.cc
[ 42%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_query.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_query.cc
[ 42%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_residue.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_residue.cc
[ 42%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_residue_view.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_chain_view.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_coord_group.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_coord_frame.cc:24:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_surface.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_surface.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_editors.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_entity.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_bounding_box.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_entity_view.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_property_id.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_query_view_wrapper.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_query.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_residue.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_residue_view.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_surface.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_bounding_box.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_torsion.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_torsion.cc
[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_pqr_handler.cc
[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_visitor.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_visitor.cc
[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/wrap_mol.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_query_view_wrapper.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_entity_property_mapper.cc
[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_mae_handler.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_torsion.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_visitor.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/wrap_mol.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/pdb_reader.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/base/pymod/export_entity_property_mapper.cc:1:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_pdb_handler.cc
[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/pdb_writer.cc
[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_sdf_handler.cc
[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_mmcif_handler.cc
[ 44%] Linking CXX shared library ../../../stage/lib/libost_gfx.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/test_texture.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/textures/test_texture.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/glyph_texture.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/textures/glyph_texture.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_gfx.so.2.2 -o ../../../stage/lib/libost_gfx.so.2.2.0 CMakeFiles/ost_gfx.dir/bitmap_io.cc.o CMakeFiles/ost_gfx.dir/exporter.cc.o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o CMakeFiles/ost_gfx.dir/color.cc.o CMakeFiles/ost_gfx.dir/primitives.cc.o CMakeFiles/ost_gfx.dir/entity.cc.o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o CMakeFiles/ost_gfx.dir/gfx_node.cc.o CMakeFiles/ost_gfx.dir/gfx_object.cc.o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o CMakeFiles/ost_gfx.dir/input.cc.o CMakeFiles/ost_gfx.dir/prim_list.cc.o CMakeFiles/ost_gfx.dir/scene.cc.o CMakeFiles/ost_gfx.dir/selection.cc.o CMakeFiles/ost_gfx.dir/surface.cc.o CMakeFiles/ost_gfx.dir/gradient.cc.o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o CMakeFiles/ost_gfx.dir/vertex_array.cc.o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o CMakeFiles/ost_gfx.dir/material.cc.o CMakeFiles/ost_gfx.dir/povray.cc.o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o CMakeFiles/ost_gfx.dir/texture.cc.o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o CMakeFiles/ost_gfx.dir/map_iso.cc.o CMakeFiles/ost_gfx.dir/map_slab.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_db.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so 
[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/sdf_reader.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gfx.so.2.2.0 ../../../stage/lib/libost_gfx.so.2.2 ../../../stage/lib/libost_gfx.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 44%] Built target ost_gfx
[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/sdf_writer.cc
[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/save_entity.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/save_entity.cc
[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/load_entity.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/load_entity.cc
[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/surface_io_msms_handler.cc
[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/load_surface.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/load_surface.cc
[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/chemdict_parser.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/io_profile.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/io_profile.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/dcd_io.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/format/alt_sstream.hpp:22,
                 from /usr/include/boost/format/internals.hpp:24,
                 from /usr/include/boost/format.hpp:38,
                 from /srv/build/openstructure-2.2.0/modules/io/src/mol/sdf_writer.hh:33,
                 from /srv/build/openstructure-2.2.0/modules/io/src/mol/sdf_writer.cc:23:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/star_parser.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/star_parser.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/mmcif_reader.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/mmcif_info.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/pdb_str.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/mol/stereochemical_params_reader.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/seq/clustal_io_handler.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/load.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/seq/load.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/save.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/seq/save.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/seq/fasta_io_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/seq/pir_io_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/seq/promod_io_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/seq/hhm_io_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/seq/pssm_io_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/load_map.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/load_map.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_dx_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_spi_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_situs_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_mrc_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_dm3_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_dat_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_ipl_handler.cc
In file included from /usr/include/boost/bind.hpp:30,
                 from /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.cc:32:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_nanoscope_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_png_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_df3_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/image_format.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/image_format.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh:32,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/alg_transform.hh:24,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/transform.hh:24,
                 from /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.cc:24:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -c /srv/build/openstructure-2.2.0/modules/io/src/img/tiff_util.cc
[ 48%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/mol/_ost_mol.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.9/dist-packages/ost/mol/_ost_mol.so CMakeFiles/_ost_mol.dir/export_atom.cc.o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o CMakeFiles/_ost_mol.dir/export_bond.cc.o CMakeFiles/_ost_mol.dir/export_chain.cc.o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o CMakeFiles/_ost_mol.dir/export_editors.cc.o CMakeFiles/_ost_mol.dir/export_entity.cc.o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o CMakeFiles/_ost_mol.dir/export_property_id.cc.o CMakeFiles/_ost_mol.dir/export_query.cc.o CMakeFiles/_ost_mol.dir/export_residue.cc.o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o CMakeFiles/_ost_mol.dir/export_surface.cc.o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o CMakeFiles/_ost_mol.dir/export_torsion.cc.o CMakeFiles/_ost_mol.dir/export_visitor.cc.o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/mol/base/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/./__init__.pyc\",\"__init__.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 48%] Built target _ost_mol
make  -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend.internal".
Scanning dependencies of target _ost_seq
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 48%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o
[ 48%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o
[ 48%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/export_sequence.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/pymod/export_sequence.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/pymod/export_profile_handle.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/pymod/wrap_seq.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/seq/base/pymod/wrap_seq.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/object/class.hpp:9,
                 from /usr/include/boost/python/class.hpp:13,
                 from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:9,
                 from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
                 from /srv/build/openstructure-2.2.0/modules/seq/base/pymod/export_profile_handle.cc:24:
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/seq/base/pymod/export_sequence.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Linking CXX shared library ../../../stage/lib/libost_io.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_io.so.2.2 -o ../../../stage/lib/libost_io.so.2.2.0 CMakeFiles/ost_io.dir/io_manager.cc.o CMakeFiles/ost_io.dir/convert.cc.o CMakeFiles/ost_io.dir/io_utils.cc.o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o CMakeFiles/ost_io.dir/mol/save_entity.cc.o CMakeFiles/ost_io.dir/mol/load_entity.cc.o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o CMakeFiles/ost_io.dir/mol/load_surface.cc.o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o CMakeFiles/ost_io.dir/mol/io_profile.cc.o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o CMakeFiles/ost_io.dir/mol/star_parser.cc.o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o CMakeFiles/ost_io.dir/seq/load.cc.o CMakeFiles/ost_io.dir/seq/save.cc.o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o CMakeFiles/ost_io.dir/img/load_map.cc.o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o CMakeFiles/ost_io.dir/img/image_format.cc.o CMakeFiles/ost_io.dir/img/tiff_util.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_io.so.2.2 ../../../stage/lib/libost_io.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 48%] Built target ost_io
make  -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/depend
make  -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend
make  -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend
make  -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/depend
make  -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/conop/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/tools/molck /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/depend.internal".
Scanning dependencies of target test_mae_standalone
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/molck.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/depend.internal".
Scanning dependencies of target lddt
Scanning dependencies of target chemdict_tool
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/molck.dir/depend.internal".
Scanning dependencies of target molck
[ 48%] Generating moc_file_browser.cpp
[ 50%] Generating moc_file_type_dialog.cpp
[ 50%] Generating data_viewer/moc_pointlist_overlay_base.cpp
[ 50%] Generating moc_file_viewer.cpp
[ 50%] Generating moc_scene_menu.cpp
[ 51%] Generating moc_gl_canvas.cpp
[ 51%] Generating moc_gl_win.cpp
[ 51%] Generating moc_gosty_app.cpp
[ 51%] Generating moc_main.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_browser.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_viewer.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_win.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_menu.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty_app.cpp_parameters
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main.cpp_parameters
make  -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/build
[ 51%] Generating moc_main_area.cpp
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/build
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_area.cpp_parameters
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 51%] Building CXX object modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o
[ 51%] Building CXX object modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o
[ 51%] Building CXX object modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/src/chemdict_tool.cc
[ 51%] Building CXX object tools/molck/CMakeFiles/molck.dir/main.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_mae_standalone.cc
[ 51%] Generating moc_perspective.cpp
[ 51%] Generating moc_main_window.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/lddt.dir/lddt.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/src/lddt.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/molck.dir/main.cc.o -c /srv/build/openstructure-2.2.0/tools/molck/main.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_perspective.cpp_parameters
[ 51%] Generating moc_dock_widget.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_window.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_dock_widget.cpp_parameters
[ 51%] Generating moc_scene_selection.cpp
[ 51%] Generating moc_widget.cpp
[ 52%] Generating moc_widget_pool.cpp
[ 52%] Generating messages/moc_message_widget.cpp
[ 52%] Generating moc_widget_geom_handler.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_selection.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_pool.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp_parameters
[ 52%] Generating messages/moc_message_box_widget.cpp
[ 52%] Generating messages/moc_log_reader.cpp
[ 52%] Generating sequence_viewer/moc_align_properties_painter.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp_parameters
[ 52%] Generating sequence_viewer/moc_background_painter.cpp
[ 52%] Generating sequence_viewer/moc_base_row.cpp
[ 52%] Generating sequence_viewer/moc_conservation_painter.cpp
[ 52%] Generating sequence_viewer/moc_painter.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp_parameters
[ 52%] Generating sequence_viewer/moc_secstr_row.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp_parameters
[ 53%] Generating sequence_viewer/moc_seq_secstr_painter.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp_parameters
[ 53%] Generating sequence_viewer/moc_seq_selection_painter.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp_parameters
[ 53%] Generating sequence_viewer/moc_seq_text_painter.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp_parameters
[ 53%] Generating sequence_viewer/moc_sequence_delegate.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp_parameters
[ 53%] Generating sequence_viewer/moc_sequence_model.cpp
[ 53%] Generating sequence_viewer/moc_sequence_row.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp_parameters
[ 53%] Generating sequence_viewer/moc_sequence_table_view.cpp
[ 53%] Generating sequence_viewer/moc_sequence_search_bar.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp_parameters
[ 53%] Generating sequence_viewer/moc_sequence_viewer.cpp
[ 53%] Generating sequence_viewer/moc_tick_painter.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp_parameters
[ 55%] Generating sequence_viewer/moc_title_row.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp_parameters
[ 55%] Generating sequence_viewer/moc_alignment_view_object.cpp
[ 55%] Generating sequence_viewer/moc_base_view_object.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp_parameters
[ 55%] Generating python_shell/moc_main_thread_runner.cpp
[ 55%] Generating sequence_viewer/moc_sequence_view_object.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp_parameters
[ 55%] Generating python_shell/moc_completer_base.cpp
[ 55%] Generating python_shell/moc_gutter.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp_parameters
[ 55%] Generating python_shell/moc_output_redirector.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp_parameters
[ 55%] Generating python_shell/moc_path_completer.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp_parameters
[ 55%] Generating python_shell/moc_python_completer.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp_parameters
[ 56%] Generating python_shell/moc_python_interpreter.cpp
[ 56%] Generating python_shell/moc_python_interpreter_worker.cpp
[ 56%] Generating python_shell/moc_python_namespace_tree_model.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp_parameters
[ 56%] Generating python_shell/moc_python_shell.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp_parameters
[ 56%] Generating python_shell/moc_python_shell_widget.cpp
[ 56%] Generating python_shell/moc_text_logger.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp_parameters
[ 56%] Generating python_shell/moc_state_machine.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp_parameters
[ 56%] Generating python_shell/moc_state.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp_parameters
[ 56%] Generating python_shell/moc_transition.cpp
[ 56%] Generating python_shell/moc_transition_guard.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp_parameters
[ 56%] Generating panels/moc_button_bar.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp_parameters
[ 57%] Generating panels/moc_drop_box.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp_parameters
[ 57%] Generating panels/moc_panel_manager.cpp
[ 57%] Generating panels/moc_panel_bar.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp_parameters
[ 57%] Generating panels/moc_bottom_bar.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp_parameters
[ 57%] Generating panels/moc_button_box.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp_parameters
[ 57%] Generating panels/moc_event_button.cpp
[ 57%] Generating panels/moc_panel_widget_container.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp_parameters
[ 57%] Generating panels/moc_panel_bar_widget_holder.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp_parameters
[ 57%] Generating panels/moc_side_bar.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp_parameters
[ 58%] Generating panels/moc_splitter_panel_bar.cpp
[ 58%] Generating panels/moc_tabbed_panel_bar.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp_parameters
[ 58%] Generating scene_win/moc_context_menu.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp_parameters
[ 58%] Generating scene_win/moc_current_selection_node.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp_parameters
[ 58%] Generating scene_win/moc_custom_part_node.cpp
[ 58%] Generating scene_win/moc_gfx_scene_node.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp_parameters
[ 58%] Generating scene_win/moc_label_node.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp_parameters
[ 58%] Generating scene_win/moc_entity_node.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp_parameters
[ 58%] Generating scene_win/moc_entity_part_node.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp_parameters
[ 58%] Generating scene_win/moc_render_mode_node.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp_parameters
[ 60%] Generating scene_win/moc_render_modes_node.cpp
[ 60%] Generating scene_win/moc_root_node.cpp
[ 60%] Generating scene_win/moc_scene_node.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp_parameters
[ 60%] Generating scene_win/moc_scene_win.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp_parameters
[ 60%] Generating scene_win/moc_scene_win_model.cpp
[ 60%] Generating tools/moc_tool.cpp
[ 60%] Generating tools/moc_tool_option_group.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp_parameters
[ 60%] Generating tools/moc_tool_options.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp_parameters
[ 60%] Generating tools/moc_tool_bar.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp_parameters
[ 60%] Generating tools/moc_tool_option.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp_parameters
[ 60%] Generating tools/moc_tool_manager.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp_parameters
[ 61%] Generating tools/moc_tool_options_widget.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp_parameters
[ 61%] Generating tools/moc_measure_tool.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp_parameters
[ 61%] Generating tools/moc_tool_options_win.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp_parameters
[ 61%] Generating data_viewer/moc_argand.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp_parameters
[ 61%] Generating data_viewer/moc_fft_panel.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp_parameters
[ 61%] Generating data_viewer/moc_info_panel.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp_parameters
[ 61%] Generating data_viewer/moc_data_viewer.cpp
[ 61%] Generating data_viewer/moc_overlay_manager_gui.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp_parameters
[ 61%] Generating data_viewer/moc_data_viewer_panel_base.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp_parameters
[ 61%] Generating data_viewer/moc_null_overlay.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp_parameters
[ 61%] Generating data_viewer/moc_overlay_base.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/depend.internal".
Scanning dependencies of target ost_gui
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o
[ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o
[ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o
[ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o
[ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o
[ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o
[ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o
[ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o
[ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_browser.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_viewer.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_win.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_menu.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty_app.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_main.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_area.cpp
[ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_perspective.cpp
[ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_dock_widget.cpp
[ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_window.cpp
[ 62%] Linking CXX executable ../../../stage/bin/test_mae_standalone
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mae_standalone.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -o ../../../stage/bin/test_mae_standalone   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
In file included from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_dock_widget.cpp:10:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   38 |   DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                                             ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdockwidget.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDockWidget:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/dock_widget.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_dock_widget.cpp:10:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 62%] Built target test_mae_standalone
[ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_selection.cpp
[ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_widget.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget.cpp
[ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp
[ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_pool.cpp
[ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp
[ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp
In file included from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_window.cpp:10:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main_window.hh:46:55: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |   MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main_window.hh:35,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_window.cpp:10:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty_app.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp
[ 64%] Linking CXX executable ../../../stage/bin/chemdict_tool
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdict_tool.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -o ../../../stage/bin/chemdict_tool   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 64%] Built target chemdict_tool
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp
[ 65%] Linking CXX executable ../../../../stage/bin/lddt
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lddt.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/lddt.dir/lddt.cc.o -o ../../../../stage/bin/lddt   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_io.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 65%] Built target lddt
[ 65%] Linking CXX executable ../../stage/bin/molck
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tools/molck && /usr/bin/cmake -E cmake_link_script CMakeFiles/molck.dir/link.txt --verbose=1
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/molck.dir/main.cc.o -o ../../stage/bin/molck   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../stage/lib/libost_io.so.2.2.0 ../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../stage/lib/libost_seq_alg.so.2.2.0 ../../stage/lib/libost_conop.so.2.2.0 ../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../stage/lib/libost_seq.so.2.2.0 ../../stage/lib/libost_mol.so.2.2.0 ../../stage/lib/libost_img_alg.so.2.2.0 ../../stage/lib/libost_img.so.2.2.0 ../../stage/lib/libost_info.so.2.2.0 ../../stage/lib/libost_base.so.2.2.0 ../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 65%] Built target molck
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp
[ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp
[ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp
[ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp
[ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp
[ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp
[ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp
[ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp
[ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp
[ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp
[ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_shell_widget.hh:28,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/transition.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/transition_guard.hh:24,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp:10:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp
[ 73%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/seq/_ost_seq.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.9/dist-packages/ost/seq/_ost_seq.so CMakeFiles/_ost_seq.dir/export_sequence.cc.o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/seq/base/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/./__init__.pyc\",\"__init__.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp
[ 73%] Built target _ost_seq
make  -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend.internal".
Scanning dependencies of target _ost_bindings
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 73%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -c /srv/build/openstructure-2.2.0/modules/bindings/pymod/export_tmalign.cc
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/thin_splitter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/thin_splitter.cc
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/perspective.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/perspective.cc
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_registry.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/widget_registry.cc
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_browser.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/file_browser.cc
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/file_type_dialog.cc
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_viewer.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/file_viewer.cc
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/main.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/main.cc
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/gl_canvas.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/gl_canvas.cc
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/dock_widget.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/dock_widget.cc
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/main_window.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/main_window.cc
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/gl_win.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/gl_win.cc
In file included from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/../../../../../modules/gui/src/data_viewer/data_viewer.hh:37,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp:10:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |   MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:35,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/../../../../../modules/gui/src/data_viewer/data_viewer.hh:37,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp:10:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_menu.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_menu.cc
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/widget.cc
[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/admin.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/admin.cc
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_pool.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/widget_pool.cc
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/messages/message_widget.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/bindings/pymod/export_tmalign.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.cc
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/messages/log_reader.cc
In file included from /srv/build/openstructure-2.2.0/modules/gui/src/dock_widget.cc:25:
/srv/build/openstructure-2.2.0/modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   38 |   DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                                             ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdockwidget.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDockWidget:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/dock_widget.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/dock_widget.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
In file included from /srv/build/openstructure-2.2.0/modules/gui/src/main_window.cc:25:
/srv/build/openstructure-2.2.0/modules/gui/src/main_window.hh:46:55: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |   MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/main_window.hh:35,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/main_window.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
In file included from /srv/build/openstructure-2.2.0/modules/gui/src/main_window.cc:26:
/srv/build/openstructure-2.2.0/modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   38 |   DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                                             ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/main_window.hh:35,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/main_window.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/main_window.cc: In member function ‘void ost::gui::MainWindow::AddDockWidget(QWidget*, const QString&, bool, int)’:
/srv/build/openstructure-2.2.0/modules/gui/src/main_window.cc:60:47: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   60 |   DockWidget* dock = new DockWidget(name, this);
      |                                               ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/main_window.hh:35,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/main_window.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/main_window.cc:71:52: warning: ‘QVariant qVariantFromValue(const T&) [with T = QDockWidget*]’ is deprecated: Use QVariant::fromValue() instead. []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   71 |   act->setData(qVariantFromValue((QDockWidget*)dock));
      |                                                    ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qaction.h:47,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmenu.h:47,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMenu:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/main_window.hh:36,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/main_window.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qvariant.h:530:17: note: declared here
  530 | inline QVariant qVariantFromValue(const T &t)
      |                 ^~~~~~~~~~~~~~~~~
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/align_properties_painter.cc
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/file_browser.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/background_painter.cc
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/conservation_painter.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/main.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/secstr_row.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gl_win.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_secstr_painter.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_menu.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_selection_painter.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/messages/message_widget.cc:23:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.cc:23:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 76%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -c /srv/build/openstructure-2.2.0/modules/bindings/pymod/wrap_bindings.cc
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/smart_ptr/weak_ptr.hpp:17,
                 from /usr/include/boost/smart_ptr/enable_shared_from_this.hpp:16,
                 from /usr/include/boost/enable_shared_from_this.hpp:16,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:28,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gl_canvas.hh:23,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gl_canvas.cc:22:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_text_painter.cc
/srv/build/openstructure-2.2.0/modules/gui/src/file_browser.cc: In constructor ‘ost::gui::FileBrowser::FileBrowser(QWidget*)’:
/srv/build/openstructure-2.2.0/modules/gui/src/file_browser.cc:64:13: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   64 |  model_(new QDirModel),
      |             ^~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDirModel:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/file_browser.cc:55:
/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
   73 |     QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
      |                                                                   ^~~~~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/file_browser.cc: In constructor ‘ost::gui::FileBrowser::FileBrowser(const QString&, QWidget*)’:
/srv/build/openstructure-2.2.0/modules/gui/src/file_browser.cc:104:13: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  104 |  model_(new QDirModel),
      |             ^~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDirModel:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/file_browser.cc:55:
/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
   73 |     QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
      |                                                                   ^~~~~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/gl_canvas.cc: In member function ‘virtual void ost::gui::GLCanvas::wheelEvent(QWheelEvent*)’:
/srv/build/openstructure-2.2.0/modules/gui/src/gl_canvas.cc:488:51: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  488 |               0.2*static_cast<Real>(-event->delta()));
      |                                                   ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QMouseEvent:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:25,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gl_canvas.hh:23,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gl_canvas.cc:22:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here
  219 |     inline int delta() const  { return qt4D; }
      |                ^~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/main.cc: In static member function ‘static QSize ost::gui::GostyMainWindow::GetDefaultSize()’:
/srv/build/openstructure-2.2.0/modules/gui/src/main.cc:59:65: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   59 |   QRect desktop_geom=QApplication::desktop()->availableGeometry();
      |                                                                 ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/main.cc:35:
/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here
   88 |     QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const;
      |                                                                   ^~~~~~~~~~~~~~~~~
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.cc
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.cc
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_row.cc
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o
make  -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_search_bar.cc
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/db/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/depend.internal".
Scanning dependencies of target _ost_db
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 76%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_db.dir/export_linear_db.cc.o -c /srv/build/openstructure-2.2.0/modules/db/pymod/export_linear_db.cc
[ 76%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_db.dir/wrap_db.cc.o -c /srv/build/openstructure-2.2.0/modules/db/pymod/wrap_db.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/bindings/pymod/wrap_bindings.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 76%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/bindings/_ost_bindings.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_bindings.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../stage/lib/python3.9/dist-packages/ost/bindings/_ost_bindings.so CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_bindings.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so 
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/tick_painter.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/lga.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./lga.pyc\",\"lga.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/hbplus.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hbplus.pyc\",\"hbplus.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/msms.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./msms.pyc\",\"msms.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/tmtools.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./tmtools.pyc\",\"tmtools.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/dssp.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./dssp.pyc\",\"dssp.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/clustalw.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./clustalw.pyc\",\"clustalw.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/utils.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./utils.pyc\",\"utils.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/naccess.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./naccess.pyc\",\"naccess.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/hhblits.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits.pyc\",\"hhblits.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/hhblits2.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits2.pyc\",\"hhblits2.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/hhblits3.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./hhblits3.pyc\",\"hhblits3.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/blast.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./blast.pyc\",\"blast.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/cadscore.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./cadscore.pyc\",\"cadscore.py\",doraise=True)"
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/title_row.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/kclust.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./kclust.pyc\",\"kclust.py\",doraise=True)"
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/alignment_view_object.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/bindings/pymod/ialign.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/bindings/./ialign.pyc\",\"ialign.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 78%] Built target _ost_bindings
make  -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend.internal".
Scanning dependencies of target _ost_seq_alg
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 78%] Building CXX object modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/pymod/wrap_seq_alg.cc
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.cc
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_view_object.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/db/pymod/export_linear_db.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/db/pymod/wrap_db.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/gosty_app.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/gosty_app.cc
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/main_area.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/main_area.cc
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/widget_state_saver.cc
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_selection.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_selection.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:23:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc: In member function ‘virtual int ost::gui::SequenceTableView::sizeHintForColumn(int) const’:
/srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc:480:39: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  480 |   return this->fontMetrics().width('W');
      |                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/qpainter.h:59,
                 from /usr/include/aarch64-linux-gnu/qt5/QtGui/QPainter:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/painter.hh:30,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.hh:27,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.hh:27,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.hh:35,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here
  110 |     int width(QChar) const;
      |         ^~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/seq/alg/pymod/wrap_seq_alg.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/widget_geom_handler.cc
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/file_loader.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/file_loader.cc
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/button_bar.cc
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/drop_box.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gosty_app.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_bar.cc
/srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc: In member function ‘void ost::gui::SequenceViewer::MouseWheelEvent(QWheelEvent*)’:
/srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:298:28: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  298 |   int delta = event->delta();
      |                            ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QWheelEvent:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh:32,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:42:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here
  219 |     inline int delta() const  { return qt4D; }
      |                ^~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:299:26: warning: ‘Qt::Orientation QWheelEvent::orientation() const’ is deprecated: Use angleDelta() []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  299 |   if (event->orientation() == Qt::Vertical) {
      |                          ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QWheelEvent:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh:32,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.cc:42:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qevent.h:222:28: note: declared here
  222 |     inline Qt::Orientation orientation() const { return qt4O; }
      |                            ^~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_selection.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/bottom_bar.cc
[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/button_box.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/button_box.cc
[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/event_button.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/event_button.cc
[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_manager.cc
[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_widget_container.cc
[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.cc
[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/side_bar.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/file_loader.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/splitter_panel_bar.cc
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.cc
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_option_group.cc
In file included from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gosty_app.cc:33:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |   MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gosty_app.cc:19:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/panels/event_button.cc: In member function ‘virtual void ost::gui::EventButton::mouseMoveEvent(QMouseEvent*)’:
/srv/build/openstructure-2.2.0/modules/gui/src/panels/event_button.cc:50:30: warning: ‘Qt::DropAction QDrag::start(Qt::DropActions)’ is deprecated: Use QDrag::exec() instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   50 |    drag->start(Qt::MoveAction);
      |                              ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QDrag:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/panels/event_button.cc:22:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qdrag.h:79:20: note: declared here
   79 |     Qt::DropAction start(Qt::DropActions supportedActions = Qt::CopyAction);
      |                    ^~~~~
In file included from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_selection.cc:35:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |   MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_selection.cc:19:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_bar.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_options.cc
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_option.cc
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_manager.cc
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.cc
[ 82%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/db/_ost_db.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_db.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../stage/lib/python3.9/dist-packages/ost/db/_ost_db.so CMakeFiles/_ost_db.dir/export_linear_db.cc.o CMakeFiles/_ost_db.dir/wrap_db.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/mouse_event.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/db/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/db/./__init__.pyc\",\"__init__.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 82%] Built target _ost_db
make  -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/conop/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend.internal".
Scanning dependencies of target _ost_conop
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 82%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/pymod/wrap_conop.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/manipulator.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_options_widget.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_bar.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/selection_tool.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/measure_tool.cc
In file included from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/file_loader.cc:52:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |   MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/file_loader.cc:19:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/gutter.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/completer_base.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc: In member function ‘void ost::gui::OutputRedirector::Write(const String&)’:
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:42:23: warning: ‘int QTime::elapsed() const’ is deprecated: Use QElapsedTimer instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   42 |     if(timer_.elapsed()>1000){
      |                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:237:54: note: declared here
  237 |     QT_DEPRECATED_X("Use QElapsedTimer instead") int elapsed() const;
      |                                                      ^~~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:46:22: warning: ‘int QTime::restart()’ is deprecated: Use QElapsedTimer instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |       timer_.restart();
      |                      ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:236:54: note: declared here
  236 |     QT_DEPRECATED_X("Use QElapsedTimer instead") int restart();
      |                                                      ^~~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:52:18: warning: ‘void QTime::start()’ is deprecated: Use QElapsedTimer instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   52 |     timer_.start();
      |                  ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:235:55: note: declared here
  235 |     QT_DEPRECATED_X("Use QElapsedTimer instead") void start();
      |                                                       ^~~~~
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/path_completer.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_context_parser.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/conop/pymod/wrap_conop.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_completer.cc
[ 83%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_compound.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/pymod/export_compound.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/tools/manipulator.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_bar.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc: In constructor ‘ost::gui::OstDirModel::OstDirModel(QObject*)’:
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc:31:18: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   31 |  QDirModel(parent)
      |                  ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDirModel:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.hh:26,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.cc:23:
/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
   73 |     QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
      |                                                                   ^~~~~~~~~
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.cc
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_item.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/gutter.cc:22:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.cc
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_text_document_layout.cc
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_tokenizer.cc
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_syntax_highlighter.cc
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/shell_history.cc
[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/string_literal_positions.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/conop/pymod/export_compound.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/state_machine.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/state.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/state.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/transition.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 87%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_processor.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/pymod/export_processor.cc
[ 87%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/pymod/export_heuristic.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_item.hh:25,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_item.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.cc:24:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/context_menu.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.cc
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc: In member function ‘virtual Qt::ItemFlags ost::gui::PythonNamespaceTreeModel::flags(const QModelIndex&) const’:
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc:110:12: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::ItemFlag; QFlags<T>::Zero = int QFlags<Qt::ItemFlag>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  110 |     return 0;
      |            ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:33,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_namespace_tree_model.cc:19:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/custom_part_node.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_node.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/label_node.cc
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc: In constructor ‘ost::gui::PythonShellWidget::PythonShellWidget(QWidget*)’:
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:79:38: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   79 |   setTabStopWidth(2*metrics.width(" "));
      |                                      ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qwidget.h:50,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qframe.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtextedit.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here
  106 |     int width(const QString &, int len = -1) const;
      |         ^~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:79:39: warning: ‘void QPlainTextEdit::setTabStopWidth(int)’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   79 |   setTabStopWidth(2*metrics.width(" "));
      |                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:179:24: note: declared here
  179 |     QT_DEPRECATED void setTabStopWidth(int width);
      |                        ^~~~~~~~~~~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc: In member function ‘void ost::gui::PythonShellWidget::SetTabWidth(int)’:
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:537:47: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  537 |   setTabStopWidth(tab_width_*metrics.width(" "));
      |                                               ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qwidget.h:50,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qframe.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtextedit.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here
  106 |     int width(const QString &, int len = -1) const;
      |         ^~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:537:48: warning: ‘void QPlainTextEdit::setTabStopWidth(int)’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  537 |   setTabStopWidth(tab_width_*metrics.width(" "));
      |                                                ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:34,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.cc:25:
/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:179:24: note: declared here
  179 |     QT_DEPRECATED void setTabStopWidth(int width);
      |                        ^~~~~~~~~~~~~~~
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/transition.hh:23,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/state.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/transition.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/entity_part_node.cc
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/conop/pymod/export_processor.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/conop/pymod/export_heuristic.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/gfx_scene_node.cc
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/render_mode_node.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.hh:24,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/root_node.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 88%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/pymod/export_amino_acids.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/tools/map_tool.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/argand.cc
[ 88%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/seq/alg/_ost_seq_alg.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.9/dist-packages/ost/seq/alg/_ost_seq_alg.so CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel.cc
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/seq/alg/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/seq/alg/pymod/mat.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./mat.pyc\",\"mat.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/seq/alg/pymod/renumber.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/seq/alg/./renumber.pyc\",\"renumber.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 89%] Built target _ost_seq_alg
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/draw_overlay.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/drawing_functions.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc:23:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o
[ 89%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/fft_panel.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_conop.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/pymod/export_conop.cc
[ 89%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_diag.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/pymod/export_diag.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/conop/pymod/export_amino_acids.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc: In member function ‘virtual QMimeData* ost::gui::SceneWinModel::mimeData(const QModelIndexList&) const’:
/srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc:231:31: warning: ‘QByteArray& QByteArray::append(const QString&)’ is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  231 |       encoded_data.append(text);
      |                               ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qobject.h:47,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/QObject:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:24,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.hh:34,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.cc:23:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:1507:20: note: declared here
 1507 | inline QByteArray &QByteArray::append(const QString &s)
      |                    ^~~~~~~~~~
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/info_panel.cc
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘virtual void ost::img::gui::DataViewerPanelBase::paintEvent(QPaintEvent*)’:
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:440:70: warning: ‘static bool QPixmapCache::find(const QString&, QPixmap&)’ is deprecated: Use bool find(const QString &, QPixmap *) instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  440 |       if (update_raster_image_ || ( !QPixmapCache::find(cache_key, pm))) {
      |                                                                      ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QPixmapCache:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:40:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qpixmapcache.h:81:17: note: declared here
   81 |     static bool find(const QString &key, QPixmap &pixmap);
      |                 ^~~~
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘virtual void ost::img::gui::DataViewerPanelBase::wheelEvent(QWheelEvent*)’:
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:613:19: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  613 |   if(event->delta()>0) {
      |                   ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtGui/QResizeEvent:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:36:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here
  219 |     inline int delta() const  { return qt4D; }
      |                ^~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘void ost::img::gui::DataViewerPanelBase::draw_pixel_values(QPainter&)’:
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:1074:62: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
 1074 |         int string_w=painter.fontMetrics().width(value_string);
      |                                                              ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qwidget.h:50,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QWidget:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here
  106 |     int width(const QString &, int len = -1) const;
      |         ^~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:1090:62: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
 1090 |         int string_w=painter.fontMetrics().width(value_string);
      |                                                              ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qwidget.h:50,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QWidget:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34:
/usr/include/aarch64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here
  106 |     int width(const QString &, int len = -1) const;
      |         ^~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc: In member function ‘void ost::gui::SceneWin::RowsInserted(const QModelIndex&, int, int)’:
/srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc:117:39: warning: ‘QModelIndex QModelIndex::child(int, int) const’ is deprecated: Use QAbstractItemModel::index []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  117 |     model->select(parent.child(start,0),QItemSelectionModel::ClearAndSelect|QItemSelectionModel::Rows);
      |                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/QModelIndex:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh:34,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.cc:26:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here
  455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const
      |                    ^~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/img2qt.cc
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/mask_overlay.cc
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/null_overlay.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/map_slab.hh:26,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/tools/map_tool.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 89%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/pymod/export_rule_based.cc
[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/conop/pymod/export_conop.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_gui.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/conop/pymod/export_diag.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay.cc
In file included from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:37:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/dock_widget.hh:38:77: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   38 |   DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                                             ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
In file included from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.hh:37,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:41:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |   MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay_base.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/strategies.cc
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc: In constructor ‘ost::img::gui::DataViewer::DataViewer(QWidget*, const ost::img::ImageHandle&, const QString&)’:
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:75:14: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   75 |   lastmouse_()
      |              ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:26:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc: In member function ‘void ost::img::gui::DataViewer::build(const ost::img::ImageHandle&)’:
/srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:315:55: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
  315 |     resize(QApplication::desktop()->availableGeometry().adjusted(20,20,-20,-20).size());
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.cc:53:
/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here
   88 |     QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const;
      |                                                                   ^~~~~~~~~~~~~~~~~
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/viewer_normalizer.cc
[ 91%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/pymod/export_ring_finder.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/conop/pymod/export_rule_based.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/conop/pymod/export_ring_finder.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 91%] Linking CXX shared library ../../../stage/lib/libost_gui.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gui.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared -Wl,-soname,libost_gui.so.2.2 -o ../../../stage/lib/libost_gui.so.2.2.0 CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o CMakeFiles/ost_gui.dir/moc_main.cpp.o CMakeFiles/ost_gui.dir/moc_main_area.cpp.o CMakeFiles/ost_gui.dir/moc_perspective.cpp.o CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o CMakeFiles/ost_gui.dir/moc_main_window.cpp.o CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o CMakeFiles/ost_gui.dir/moc_widget.cpp.o CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o 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CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o CMakeFiles/ost_gui.dir/python_shell/state.cc.o CMakeFiles/ost_gui.dir/python_shell/transition.cc.o CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o 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CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_gfx.so.2.2.0 ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_seq_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
[ 91%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/conop/_ost_conop.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_conop.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../stage/lib/python3.9/dist-packages/ost/conop/_ost_conop.so CMakeFiles/_ost_conop.dir/wrap_conop.cc.o CMakeFiles/_ost_conop.dir/export_compound.cc.o CMakeFiles/_ost_conop.dir/export_processor.cc.o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o CMakeFiles/_ost_conop.dir/export_conop.cc.o CMakeFiles/_ost_conop.dir/export_diag.cc.o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gui.so.2.2.0 ../../../stage/lib/libost_gui.so.2.2 ../../../stage/lib/libost_gui.so
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 91%] Built target ost_gui
make  -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 91%] Generating moc_gosty.cpp
[ 91%] Generating qrc_dngr.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/rcc --name dngr --output /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/qrc_dngr.cpp /srv/build/openstructure-2.2.0/modules/gui/src/dngr.qrc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty.cpp_parameters
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/depend.internal".
Scanning dependencies of target gosty
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 92%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o
[ 92%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o
[ 92%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/gosty.dir/moc_gosty.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/gosty.dir/gosty.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/src/gosty.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -c /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/qrc_dngr.cpp
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/conop/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/conop/pymod/cleanup.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/conop/./cleanup.pyc\",\"cleanup.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 92%] Built target _ost_conop
make  -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend
make  -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gfx/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake --color=
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend.internal".
Scanning dependencies of target _ost_gfx
Scanning dependencies of target _ost_mol_alg
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 92%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o
[ 92%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o
[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o
make  -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build
[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o
[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o
[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o
[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o
[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o
[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o
[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o
[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o
[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/wrap_mol_alg.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_svd_superpose.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_clash.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_trajectory_analysis.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_structure_analysis.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_contact_overlap.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_accessibility.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_sec_structure.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_non_standard.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_molck.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_membrane.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_entity_to_density.cc
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 93%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o
[ 93%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_scene.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_scene.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/wrap_gfx.cc
[ 93%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_gfx_node.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/modules/gui/src/gosty.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_molck.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_membrane.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_sec_structure.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_clash.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_svd_superpose.cc:23:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_trajectory_analysis.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_contact_overlap.cc:1:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_accessibility.cc:21:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_non_standard.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_entity_to_density.cc:23:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/wrap_mol_alg.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/mol/alg/pymod/export_structure_analysis.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_scene.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/wrap_gfx.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_gfx_node.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_symmetry_node.cc
[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_gfx_obj.cc
[ 94%] Linking CXX executable ../../../stage/lib/openstructure/libexec/gosty
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gosty.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/gosty.dir/gosty.cc.o CMakeFiles/gosty.dir/moc_gosty.cpp.o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -o ../../../stage/lib/openstructure/libexec/gosty   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_gfx.so.2.2.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so 
[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_entity.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_entity.cc
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 94%] Built target gosty
[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_surface.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_surface.cc
[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_primitives.cc
[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_primlist.cc
[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_scene_observer.cc
[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_render_options.cc
[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_color.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_color.cc
[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_gradient.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_symmetry_node.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_gfx_obj.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 96%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_color_ops.cc
[ 96%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_glwin_base.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_entity.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_surface.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_primitives.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 96%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_exporter.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_primlist.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_scene_observer.cc:1:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_render_options.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_color.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_gradient.cc:24:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 96%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_bitmap.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_glwin_base.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_color_ops.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 96%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gfx.dir/export_map.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_map.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_exporter.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_bitmap.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gfx/pymod/export_map.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 96%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/gfx/_ost_gfx.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/pymod/gradients.xml /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/gradients.xml
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gfx.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../stage/lib/python3.9/dist-packages/ost/gfx/_ost_gfx.so CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o CMakeFiles/_ost_gfx.dir/export_scene.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o CMakeFiles/_ost_gfx.dir/export_entity.cc.o CMakeFiles/_ost_gfx.dir/export_surface.cc.o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o CMakeFiles/_ost_gfx.dir/export_color.cc.o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o CMakeFiles/_ost_gfx.dir/export_map.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_gfx.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gfx/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gfx/pymod/py_gfx_obj.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gfx/./py_gfx_obj.pyc\",\"py_gfx_obj.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 96%] Built target _ost_gfx
[ 97%] Linking CXX shared module ../../../../stage/lib/python3.9/dist-packages/ost/mol/alg/_ost_mol_alg.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.9/dist-packages/ost/mol/alg/_ost_mol_alg.so CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libsqlite3.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/mol/alg/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/mol/alg/pymod/views.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./views.pyc\",\"views.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/mol/alg/pymod/superpose.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./superpose.pyc\",\"superpose.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/mol/alg/pymod/qsscoring.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./qsscoring.pyc\",\"qsscoring.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/mol/alg/pymod/trajectory_analysis.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./trajectory_analysis.pyc\",\"trajectory_analysis.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/mol/alg/pymod/structure_analysis.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./structure_analysis.pyc\",\"structure_analysis.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/mol/alg/pymod/helix_kinks.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./helix_kinks.pyc\",\"helix_kinks.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/mol/alg/pymod/hbond.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/mol/alg/./hbond.pyc\",\"hbond.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 97%] Built target _ost_mol_alg
make  -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/depend.internal".
Scanning dependencies of target _ost_io
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 97%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o
[ 97%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o
[ 97%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o
[ 97%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -c /srv/build/openstructure-2.2.0/modules/io/pymod/export_mmcif_io.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -c /srv/build/openstructure-2.2.0/modules/io/pymod/export_pdb_io.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/wrap_io.cc.o -c /srv/build/openstructure-2.2.0/modules/io/pymod/wrap_io.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_io.dir/export_map_io.cc.o -c /srv/build/openstructure-2.2.0/modules/io/pymod/export_map_io.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/io/pymod/export_map_io.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/io/pymod/export_mmcif_io.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/io/pymod/export_pdb_io.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/io/pymod/wrap_io.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[ 97%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/io/_ost_io.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_io.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../stage/lib/python3.9/dist-packages/ost/io/_ost_io.so CMakeFiles/_ost_io.dir/wrap_io.cc.o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o CMakeFiles/_ost_io.dir/export_map_io.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/io/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/io/pymod/remote.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./remote.pyc\",\"remote.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/io/pymod/repository.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/io/./repository.pyc\",\"repository.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 97%] Built target _ost_io
make  -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend.internal".
Scanning dependencies of target _ost_gui
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/wrap_gui.cc.o
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_win.cc.o
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_tool.cc.o
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_alignment_view.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/wrap_gui.cc
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_message_widget.cc
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_gl_win.cc
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_tool.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_tool.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_py_shell.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_gosty.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_scene_win.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_sequence_viewer.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_perspective.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_perspective.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_sip_handler.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_scene_selection.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_main_area.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_main_area.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_panels.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_panels.cc
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_file_loader.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_menu_bar.cc
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/wrap_gui.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_sip_handler.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_menu_bar.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_gl_win.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_perspective.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_main_area.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_message_widget.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_panels.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_py_shell.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_tool.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_scene_win.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_scene_selection.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_file_loader.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_sequence_viewer.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_alignment_view.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_file_viewer.cc
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_widget.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_widget.cc
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_gl_canvas.cc
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_overlay.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_overlay.cc
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.9 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -c /srv/build/openstructure-2.2.0/modules/gui/pymod/export_overlay_manager.cc
In file included from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:41,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc:39:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |   MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qchar.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qstring.h:49,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/qdatetime.h:44,
                 from /usr/include/aarch64-linux-gnu/qt5/QtCore/QTime:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:23,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_gosty.cc:24:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_file_viewer.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_widget.cc:20:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_gl_canvas.cc:19:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/sip_handler.hh:22,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:30,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc:26:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc:25:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_overlay.cc:26:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
                 from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
                 from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
                 from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
                 from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:15,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_overlay_manager.cc:16:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
   13 | BOOST_HEADER_DEPRECATED("<iterator>")
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:41,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc:26:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |   MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qwidget.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QWidget:1,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/sip_handler.hh:24,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.hh:30,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/data_viewer_proxy.cc:26:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
In file included from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc:27:
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags<T>::QFlags(QFlags<T>::Zero) [with Enum = Qt::WindowType; QFlags<T>::Zero = int QFlags<Qt::WindowType>::Private::*]’ is deprecated: Use default constructor instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;]
   46 |   MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0);
      |                                                       ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/qglobal.h:1304,
                 from /usr/include/aarch64-linux-gnu/qt5/QtGui/qtguiglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43,
                 from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QMainWindow:1,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main_window.hh:35,
                 from /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37,
                 from /srv/build/openstructure-2.2.0/modules/gui/pymod/export_data_viewer.cc:27:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here
  123 |     QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {}
      |                                                                                ^~~~~~
[100%] Linking CXX shared module ../../../stage/lib/python3.9/dist-packages/ost/gui/_ost_gui.so
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/presets.xml /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/presets.xml
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/icons/color_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/color_icon.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/icons/preset_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/preset_icon.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/icons/render_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/render_icon.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/pymod/scene/icons/tool_icon.png /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/tool_icon.png
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gui.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro -shared  -o ../../../stage/lib/python3.9/dist-packages/ost/gui/_ost_gui.so CMakeFiles/_ost_gui.dir/wrap_gui.cc.o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o CMakeFiles/_ost_gui.dir/export_tool.cc.o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o CMakeFiles/_ost_gui.dir/export_gosty.cc.o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o CMakeFiles/_ost_gui.dir/export_perspective.cc.o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o CMakeFiles/_ost_gui.dir/export_main_area.cc.o CMakeFiles/_ost_gui.dir/export_panels.cc.o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o CMakeFiles/_ost_gui.dir/export_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o CMakeFiles/_ost_gui.dir/export_overlay.cc.o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.2.0 /usr/lib/aarch64-linux-gnu/libpython3.9.so /usr/lib/aarch64-linux-gnu/libboost_python39.so ../../../stage/lib/libost_gfx.so.2.2.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so 
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/__init__.pyc\",\"__init__.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/color_options_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_options_widget.pyc\",\"color_options_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/color_select_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/color_select_widget.pyc\",\"color_select_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/combo_options_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/combo_options_widget.pyc\",\"combo_options_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/cpk_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/cpk_widget.pyc\",\"cpk_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/custom_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/custom_widget.pyc\",\"custom_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_editor_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_editor_widget.pyc\",\"gradient_editor_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_info_handler.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_info_handler.pyc\",\"gradient_info_handler.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_list_model.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_list_model.pyc\",\"gradient_list_model.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/gradient_preset_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/gradient_preset_widget.pyc\",\"gradient_preset_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/hsc_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/hsc_widget.pyc\",\"hsc_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_gradient_info_handler.pyc\",\"immutable_gradient_info_handler.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/immutable_preset_info_handler.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/immutable_preset_info_handler.pyc\",\"immutable_preset_info_handler.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/init_inspector.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/init_inspector.pyc\",\"init_inspector.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/inspector_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/inspector_widget.pyc\",\"inspector_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/map_level_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/map_level_widget.pyc\",\"map_level_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset.pyc\",\"preset.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/remote.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/remote.pyc\",\"remote.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_list_model.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_list_model.pyc\",\"preset_editor_list_model.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_editor_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_editor_widget.pyc\",\"preset_editor_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_info_handler.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_info_handler.pyc\",\"preset_info_handler.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_list_model.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_list_model.pyc\",\"preset_list_model.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/preset_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/preset_widget.pyc\",\"preset_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/render_mode_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_mode_widget.pyc\",\"render_mode_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/render_op.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_op.pyc\",\"render_op.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/render_options_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/render_options_widget.pyc\",\"render_options_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/scene_observer_impl.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_observer_impl.pyc\",\"scene_observer_impl.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/scene_selection_helper.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/scene_selection_helper.pyc\",\"scene_selection_helper.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/simple_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/simple_widget.pyc\",\"simple_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/sline_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/sline_widget.pyc\",\"sline_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/toolbar_options_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/toolbar_options_widget.pyc\",\"toolbar_options_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/trace_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/trace_widget.pyc\",\"trace_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/tube_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/tube_widget.pyc\",\"tube_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/uniform_color_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/uniform_color_widget.pyc\",\"uniform_color_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/visibility_op.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/visibility_op.pyc\",\"visibility_op.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/line_trace_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/line_trace_widget.pyc\",\"line_trace_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/wireframe_widget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/wireframe_widget.pyc\",\"wireframe_widget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/scene/query_editor.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/scene/query_editor.pyc\",\"query_editor.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/dng/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/__init__.pyc\",\"__init__.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/dng/termuse.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/termuse.pyc\",\"termuse.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/dng/superpositiondialog.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/superpositiondialog.pyc\",\"superpositiondialog.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/dng/init.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/init.pyc\",\"init.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/dng/menu.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/dng/menu.pyc\",\"menu.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/__init__.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/init_context_menu.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_context_menu.pyc\",\"init_context_menu.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/init_menubar.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_menubar.pyc\",\"init_menubar.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/init_spacenav.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_spacenav.pyc\",\"init_spacenav.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/init_splash.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./init_splash.pyc\",\"init_splash.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/trajectory_viewer.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./trajectory_viewer.pyc\",\"trajectory_viewer.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/helpwidget.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./helpwidget.pyc\",\"helpwidget.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/table.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./table.pyc\",\"table.py\",doraise=True)"
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3.9 -c "import py_compile;py_compile.compile(\"/srv/build/openstructure-2.2.0/modules/gui/pymod/gosty_startup.py\",\"/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/gui/./gosty_startup.pyc\",\"gosty_startup.py\",doraise=True)"
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[100%] Built target _ost_gui
make  -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake --color=
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/depend.internal".
Dependee "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/depend.internal".
Scanning dependencies of target ost_scripts
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost_config
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin/ost
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin/dng
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/ost_startup.py
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/scripts/dng_startup.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/dng_startup.py
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[100%] Built target ost_scripts
make[2]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
   dh_auto_test -a
	cd obj-aarch64-linux-gnu && make -j16 check ARGS\+=-j16
make[1]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/srv/build/openstructure-2.2.0 -B/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 check
make[2]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/srv/build/openstructure-2.2.0 -B/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/CMakeFiles 95
make  -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all
make[3]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend
make  -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend
make  -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend
make  -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend
make  -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build
make  -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build
make  -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.2.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /srv/build/openstructure-2.2.0/cmake_support/substitute.cmake
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.2.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /srv/build/openstructure-2.2.0/cmake_support/substitute.cmake
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.2.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /srv/build/openstructure-2.2.0/cmake_support/substitute.cmake
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.2.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.9 -DPython_VERSION=3.9.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.9/dist-packages/ -P /srv/build/openstructure-2.2.0/cmake_support/substitute.cmake
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  0%] Built target subst_ost_startup.py
[  0%] Built target subst_ost_config
[  0%] Built target subst_ost
[  0%] Built target subst_dng
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  0%] Built target create_stage
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend
make  -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend
make  -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend
make  -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend
make  -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend
make  -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend
make  -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend
make  -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend
make  -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend
make  -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend
make  -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/geom/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake --color=
make  -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend
make  -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/config /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake --color=
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/info/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake --color=
make  -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/conop/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/db/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gfx/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build
make  -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build
make  -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build
make  -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/export_helper/generic_property_def.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./alignment_opts.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh
make  -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/export_helper/vector.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh
make  -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/config/./base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./base.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info.hh
make  -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/pointer_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./conop.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./conop.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./sqlite_wrap.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/raster_image/raster_image.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/chemdict_parser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./svd_superpose.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/bindings/src/./wrap_tmalign.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./anisotropic.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/config/./config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./clip_alignment.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_error.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_error.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./def.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./def.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_group.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./processor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./processor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./sqlite_conv.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/dispatch.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_option_group.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/star_parser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_parser.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./auto_correlate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./conservation.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/config/./dllexport.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./dllexport.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/export_helper/vec_to_list_conv.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./amino_acids.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./amino_acids.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_gen_s.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_prop.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./module_config.hh
[  0%] Built target ost_bindings_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./exc.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./exc.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/mmcif_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./sec_structure_segments.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./clear.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clear.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./diag.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./diag.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./linear_indexer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./linear_indexer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_iso_spec.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/config/./version.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./version.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./contact_prediction_score.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./geom.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./geom.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/test_utils/compare_files.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/test_utils/compare_files.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./local_dist_diff_test.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/mmcif_info.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./clip_min_max.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./mat.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./model_check.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./model_check.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./generic_property.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./generic_property.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./paged_array.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./paged_array.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./contact_weight_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/atom_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/io_profile.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/io_profile.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./distance_test_common.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/selection_tool.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/map_octree.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/impl/sequence_list_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./conjugate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh
[  0%] Built target ost_config_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./integrity_error.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./integrity_error.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./heuristic.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./heuristic.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./mat2.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat2.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_base_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./binary_container.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./binary_container.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_group.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_group.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./distance_map.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/dcd_io.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./distance_rmsd_test.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh
make  -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/measure_tool.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/octree_isocont.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./sequence_list.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_list.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/config /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./convolute.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./convolute.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./invalid_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./invalid_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./superpose_frames.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/cartoon_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/chain_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_def.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./compound.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./entropy.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_item.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_item.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./mat3.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat3.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_crd_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/db/src/./extract_data_helper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_option.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./sequence_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./correlate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./correlate.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./mat4.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat4.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./compound_lib.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./ptr_observer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./ptr_observer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_factory.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_pqr_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./filter_clashes.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_manager.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/custom_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./alignment_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./global_align.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./cross_correlate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh
[  0%] Built target ost_config
[  0%] Built target ost_db_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vec.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./construct_cbeta.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/connector_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./log.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./log.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/cpk_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_options_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_mae_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./ins_del.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./density_slice.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/manipulator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./clash_score.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./log_sink.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./log_sink.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/dihedral.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/debug_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_path.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_path.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./rule_based.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./rule_based.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vec2.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec2.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./sequence_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_mmcif_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./local_align.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./dft.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./dft.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vec3.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec3.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./trajectory_analysis.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./profile.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./profile.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_set.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_set.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/simple_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/tool_options_win.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./minimal_compound_lib.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./aligned_region.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_region.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./fft.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fft.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vec4.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec4.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/entity_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./dyn_cast.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./dyn_cast.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./structure_analysis.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/sline_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./compound_lib_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_visitor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/pdb_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/mouse_event.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./aligned_column.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./fftw_helper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./stdint.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vecmat_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./info_verbose_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_pdb_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/tools/map_tool.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/conop/src/./ring_finder.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./ring_finder.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./aligned_column_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./fill.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fill.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vecmat2_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/line_trace_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_algorithm.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./stdint_msc.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint_msc.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./item_type.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./semiglobal_align.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/fragment_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./pdbize.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/pdb_writer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./invalid_sequence.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./filter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./filter.hh
[  0%] Built target ost_conop_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./adjacency_bitmap.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./range.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./range.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vecmat3_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./geom_info_conversion.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/backbone_trace.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_row.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./sequence_identity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/entity_io_sdf_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/query_ast.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./views_from_sequences.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./fourier_filters.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/entity_detail.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/info/src/./item_type_cast.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type_cast.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vecmat4_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/sdf_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./consistency_checks.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./sequence_similarity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/base/src/./profile_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./profile_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/index.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/index.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/query_ast_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/background_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/sdf_writer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./units.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./units.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./circular_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./subst_weight_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./contact_overlap.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/type_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/query_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/conservation_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./gaussian.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh
[  0%] Built target ost_info_headers
[  0%] Built target ost_seq_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/trace_renderer_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./variance_map.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/save_entity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/save_entity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./domain_find.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./constants.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./constants.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./message.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./message.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/query_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/image_state/value_holder.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./gaussian_laplacian.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/connect_renderer_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/load_entity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_entity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./similarity_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./platform.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./platform.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/secstr_row.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./algorithm.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./algorithm.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./highest_peak_search_3d.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/residue_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/surface_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./circle_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./circle_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./string_ref.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./string_ref.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./accessibility.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/mapped_property.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite2.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./histogram.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./histogram.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./composite_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./composite_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./pod_vector.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./pod_vector.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./sec_struct.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite3.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/load_surface.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_surface.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/entity_renderer_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./line_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/tabulated_trig.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./nonstandard.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/surface_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./fixed_string.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./fixed_string.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/surface_io_msms_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./data_algorithm.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_algorithm.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/seq/alg/src/./hmm_score.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./local_sigma_threshold.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./data_observer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_observer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/pdb_str.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/impl/fast_spheres.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./molck.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./molck.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./tri_matrix.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./tri_matrix.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite2_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2_op.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./mask_image.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh
[  0%] Built target ost_seq_alg_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/impl/torsion_impl_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/mol/stereochemical_params_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/base/src/./boost_filesystem_helper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./find_membrane.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_model.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./data_types.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_types.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./composite3_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./negate.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./negate.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./atom_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_base.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/line_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./data.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_row.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/load_map.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/load_map.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/alg/src/./entity_to_density.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./aligned_cuboid.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./normalizer_factory.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh
[  0%] Built target ost_base_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./debug.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./debug.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./atom_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/custom_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_df3_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./vec_mat_predicates.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./norm.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm.hh
[  0%] Built target ost_mol_alg_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./atom_view.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_view.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/cpk_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./dllexport.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./dllexport.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/image_format.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/image_format.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./quat.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./quat.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./normalizer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./extent_iterator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_iterator.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./transform.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./transform.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/simple_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./bond_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_dx_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./norm_linear.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_spi_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./bond_table.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_table.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./extent_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./point_cloud.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./point_cloud.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/tick_painter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/sline_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./norm_log.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chain_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/line_trace_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./extent.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/geom/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/title_row.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_situs_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./norm_od.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chain_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/cartoon_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_factory.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_factory.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./power_spectrum.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh
[  0%] Built target ost_geom_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/base_view_object.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_mrc_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh
make  -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chain_view.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_view.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/render_options/trace_render_options.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./randomize.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./randomize.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/geom/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_dat_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chain_type.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_type.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_handle_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./smooth_mask_image.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/geom/src/CMakeFiles/ost_geom.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_ipl_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chem_class.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_class.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/main_thread_runner.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/by_element_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./stat.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat.hh
[  1%] Built target ost_geom
make  -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend
make  -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend
make  -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/geom/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/geom/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./chem_type.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_type.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_jpk_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/output_redirector.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/by_chain_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./stat_accumulator.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh
Scanning dependencies of target ost_geom_tests
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/base/src/CMakeFiles/ost_base.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_nanoscope_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./coord_group.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_group.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_list.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_list.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/geom/pymod/CMakeFiles/_ost_geom.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/uniform_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/completer_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./stat_min_max.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  2%] Built target ost_base
[  3%] Built target _ost_geom
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_state_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_png_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./coord_source.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_source.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/dir_model.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh
make  -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend
[  3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o
[  3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o
[  4%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./threshold.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./threshold.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/info/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake --color=
[  4%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o
[  4%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o
[  4%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o
[  4%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o
[  4%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_composite3.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_composite2.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_mat2.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_mat3.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_mat4.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_op2.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_op3.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_op4.cc
[  4%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./in_mem_coord_source.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image_state.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_dm3_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/entity_view_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/gutter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_quat.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./transcendentals.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/info/src/CMakeFiles/ost_info.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/map_io_tiff_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./image.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/path_completer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./coord_frame.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_frame.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./transform.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform.hh
[  5%] Built target ost_info
make  -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./editor_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_context_parser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./inverted_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./inverted_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/tiff_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/tiff_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./transform_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/base/pymod/CMakeFiles/_ost_base.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./editor_type_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/color_ops/map_handle_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/img/jpk_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/jpk_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./map.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./map.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_completer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./alg_transform.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh
[  5%] Built target _ost_base
make  -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./render_pass.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_pass.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./mol.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./mol.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask_base_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/sequence_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/info/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./alg_mirror.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./bitmap_io.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/fasta_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/info/pymod/CMakeFiles/_ost_info.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./alg_shift.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./collada_exporter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/pir_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh
[  6%] Built target _ost_info
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./discrete_shrink.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/promod_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./color.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./color.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_visitor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_tokenizer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh
[  6%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./transformation_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_vec2.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./entity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/profile_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_observer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./transformations.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformations.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_observer_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/hhm_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./entity_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/text_logger.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./fractional_shift.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./normalizer_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gl_helper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_property_mapper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/pssm_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_interpreter_worker.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/clustal_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_view.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_view.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./normalizer_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./polar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./polar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/load.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/load.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./null_data.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./null_data.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./line_average.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_average.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./entity_visitor_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/seq/save.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/save.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./observable.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./observable.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/shell_history.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/alg/src/./rscrosscorr.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./handle_type_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/state_machine.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_node_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./paste_impl.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./paste_impl.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./binary_data_sink.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/state.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./ics_editor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./ics_editor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./io_manager.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_manager.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_node_visitor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./peak.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./peak.hh
[  6%] Built target ost_img_alg_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./binary_data_source.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_source.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./phase.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./phase.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./not_connected_error.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_object_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/transition.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh
[  6%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_vec3.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./property_id.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./property_id.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/python_shell/transition_guard.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_object.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./physical_units.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./physical_units.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/button_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./query.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./container_serialization.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./container_serialization.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_object_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./pixel_sampling.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/drop_box.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_prim.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./point_list.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point_list.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./query_error.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_error.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./swap_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./swap_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./io_utils.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_utils.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./symmetry_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./query_state.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_state.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./point.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./residue_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gfx_test_object.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_manager.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./io_exception.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_exception.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./polygon_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./polygon_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/bottom_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./convert.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./convert.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./glwin_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./progress.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./progress.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./residue_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./input.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./input.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./size.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./size.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/button_box.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_box.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./residue_prop.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_prop.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./converting_streams.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./converting_streams.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./prim_list.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./prim_list.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./residue_view.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_view.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./spherical_mask.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./spherical_mask.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/event_button.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/event_button.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./formatted_line.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./formatted_line.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./sec_structure.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./sec_structure.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./util.cc /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_widget_container.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./scene.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/chemdict_parser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/star_parser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./star_parser.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/panel_bar_widget_holder.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./selection.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./selection.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./spatial_organizer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/side_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./surface.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./surface.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/mmcif_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./value_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./value_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./surface.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./surface_builder.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_builder.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./vecmat.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./vecmat.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/mmcif_info.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_info.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./texture.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./texture.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/splitter_panel_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./builder.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./builder.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./vertex_array.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/panels/tabbed_panel_bar.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/io_profile.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_profile.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/img/base/src/./mask_info_convert.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/dcd_io.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./dcd_io.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/context_menu.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./surface_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_handle.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./vertex_array_helper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[  6%] Built target ost_img_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./scene_observer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/current_selection_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./surface_prop.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_prop.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_crd_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh
make  -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gl_include.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_include.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_pqr_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/custom_part_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./torsion_handle.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/img/base/src/CMakeFiles/ost_img.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./glext_include.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glext_include.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./transfer_connectivity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_mae_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/entity_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh
[ 10%] Built target ost_img
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./render_mode.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_mode.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/entity_part_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./query_view_wrapper.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./material.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./material.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/gfx_scene_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./view_type_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/label_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gradient.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/pdb_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_reader.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 13%] Built target ost_img_alg
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./view_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/root_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_pdb_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gradient_manager.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh
make  -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/render_mode_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/pdb_writer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_writer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./xcs_editor.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/img/base/pymod/CMakeFiles/_ost_img.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/render_modes_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./bounding_box.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bounding_box.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./primitives.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./primitives.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/entity_io_sdf_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh
[ 15%] Built target _ost_img
make  -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_node.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./transform.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transform.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/sdf_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./povray_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh
Scanning dependencies of target ost_img_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/sdf_writer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_writer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/mol/base/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./module_config.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./povray.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/scene_win/scene_win_model.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/save_entity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save_entity.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./exporter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter.hh
[ 15%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_data.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_data.cc
[ 15%] Built target ost_mol_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/messages/message_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./exporter_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh
make  -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/depend
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/load_entity.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_entity.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./gost_exporter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/surface_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/messages/message_box_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh
Scanning dependencies of target ost_img_alg_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/messages/log_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/load_surface.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_surface.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./map_iso.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/surface_io_msms_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/argand.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh
[ 15%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_clear.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./map_slab.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_slab.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/pdb_str.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_str.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./mol/stereochemical_params_reader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gfx/src/./map_iso_prop.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/sequence_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 15%] Built target ost_gfx_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/fasta_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/draw_overlay.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh
make  -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/drawing_functions.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/pir_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/fft_panel.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/promod_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/base/src/CMakeFiles/ost_mol.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/profile_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/info_panel.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh
[ 21%] Built target ost_mol
make  -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/hhm_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/img2qt.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/pssm_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/mask_overlay.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/null_overlay.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/clustal_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh
[ 21%] Built target _ost_img_alg
make  -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/load.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh
Scanning dependencies of target ost_base_tests
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./seq/save.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save.hh
[ 21%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_base_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -c /srv/build/openstructure-2.2.0/modules/base/tests/test_generic_property.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/load_map.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_map.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_df3_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/image_format.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./image_format.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_dx_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_spi_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_situs_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/strategies.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_mrc_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_dat_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/strategies_fw.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_ipl_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/data_viewer/viewer_normalizer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_jpk_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./file_browser.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_browser.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./file_type_dialog.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_nanoscope_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./file_viewer.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_viewer.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_png_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./gl_canvas.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_dm3_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./gl_win.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_win.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/map_io_tiff_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/tiff_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./tiff_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./scene_menu.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_menu.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/io/src/./img/jpk_util.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/io/./jpk_util.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./gosty_app.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gosty_app.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./admin.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./admin.hh
[ 21%] Built target ost_io_headers
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./module_config.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./module_config.hh
make  -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/DependInfo.cmake --color=
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./main.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main.hh
Scanning dependencies of target ost_mol_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./main_area.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_area.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./perspective.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./perspective.hh
[ 21%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_atom_groups.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./scene_selection.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_selection.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./main_window.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_window.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./dock_widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./thin_splitter.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./widget.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./widget_geom_handler.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./widget_pool.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_pool.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./widget_registry.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_registry.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./widget_state_saver.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/modules/gui/src/./file_loader.hh /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_loader.hh
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 21%] Built target ost_gui_headers
make  -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/seq/base/src/CMakeFiles/ost_seq.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 22%] Built target ost_seq
make  -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 24%] Built target _ost_mol
make  -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/db/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/db/src/CMakeFiles/ost_db.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 25%] Built target ost_db
[ 25%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_chain.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_chain.cc
[ 25%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_extent.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_extent.cc
[ 26%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_image.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_image.cc
[ 26%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_vec4.cc
[ 27%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/test_transform.cc
[ 27%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++  -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -o CMakeFiles/ost_geom_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/geom/tests/tests.cc
[ 27%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_image_state.cc
[ 27%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_image_state_visitor.cc
[ 27%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_index.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_index.cc
[ 27%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o
[ 27%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_point.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_point.cc
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_sampling.cc
[ 27%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_domains.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_domains.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_domains.cc
[ 28%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_conj.cc
[ 28%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_convolute.cc
[ 28%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_size.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_size.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_size.cc
[ 28%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/test_value_holder.cc
[ 28%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/img/base/tests/tests.cc
[ 28%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_discrete_shrink.cc
[ 28%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_fft.cc
[ 28%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_conn.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_conn.cc
[ 28%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_coord_group.cc
[ 29%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -c /srv/build/openstructure-2.2.0/modules/base/tests/test_string_ref.cc
[ 29%] Linking CXX executable ../../../tests/ost_geom_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o CMakeFiles/ost_geom_tests.dir/tests.cc.o -o ../../../tests/ost_geom_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so 
[ 29%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -c /srv/build/openstructure-2.2.0/modules/base/tests/test_pod_vector.cc
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 29%] Built target ost_geom_tests
make  -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/bindings/src/CMakeFiles/ost_bindings.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 29%] Built target ost_bindings
make  -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/geom/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_geom_tests_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 29%] running checks for module geom
cd /srv/build/openstructure-2.2.0/modules/geom/tests && env OST_ROOT=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_geom_tests
Running 25 test cases...

*** No errors detected
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 29%] Built target ost_geom_tests_run
make  -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_seq_tests
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 29%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/tests/test_sequence.cc
[ 29%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/tests/test_aligned_column.cc
[ 29%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_fill.cc
[ 29%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_filter.cc
[ 29%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_histogram.cc
[ 29%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_mirror.cc
[ 29%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_negate.cc
[ 29%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_power_spectrum.cc
[ 29%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_base_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/base/tests/tests.cc
[ 30%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_shift.cc
[ 30%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_builder.cc
[ 30%] Linking CXX executable ../../../../tests/ost_img_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_img_tests.dir/test_data.cc.o CMakeFiles/ost_img_tests.dir/test_extent.cc.o CMakeFiles/ost_img_tests.dir/test_image.cc.o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o CMakeFiles/ost_img_tests.dir/test_index.cc.o CMakeFiles/ost_img_tests.dir/test_point.cc.o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o CMakeFiles/ost_img_tests.dir/test_domains.cc.o CMakeFiles/ost_img_tests.dir/test_size.cc.o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o CMakeFiles/ost_img_tests.dir/tests.cc.o -o ../../../../tests/ost_img_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so 
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 30%] Built target ost_img_tests
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 32%] Built target ost_seq_alg
make  -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 32%] Built target _ost_seq
make  -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/conop/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/conop/src/CMakeFiles/ost_conop.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 33%] Built target ost_conop
make  -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/db/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/db/pymod/CMakeFiles/_ost_db.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend
[ 33%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_stat.cc
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake --color=
[ 34%] Built target _ost_db
make  -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 34%] Built target _ost_bindings
[ 36%] Built target ost_mol_alg
make  -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/depend
make  -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/conop/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_img_tests_run
Scanning dependencies of target ost_conop_tests
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 37%] running checks for module img
[ 37%] Linking CXX executable ../../../tests/ost_base_tests
cd /srv/build/openstructure-2.2.0/modules/img/base/tests && env OST_ROOT=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_img_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base_tests.dir/link.txt --verbose=1
[ 38%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/tests/test_amino_acids.cc
Running 44 test cases...
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o CMakeFiles/ost_base_tests.dir/tests.cc.o -o ../../../tests/ost_base_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 

*** No errors detected
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 38%] Built target ost_img_tests_run
make  -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 38%] Built target _ost_seq_alg
make  -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gfx/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build
[ 38%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_delete.cc
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/gfx/src/CMakeFiles/ost_gfx.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 45%] Built target ost_gfx
make  -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/conop/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/conop/pymod/CMakeFiles/_ost_conop.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 46%] Built target _ost_conop
[ 46%] Built target ost_base_tests
make  -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend
make  -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/io/src/CMakeFiles/ost_io.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 48%] Built target _ost_mol_alg
make  -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests_run.dir/DependInfo.cmake --color=
[ 52%] Built target ost_io
make  -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gfx/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_base_tests_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build
[ 52%] running checks for module base
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/modules/base/tests && env OST_ROOT=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_base_tests
Running 5 test cases...

*** No errors detected
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 54%] Built target _ost_gfx
make  -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend
[ 54%] Built target ost_base_tests_run
make  -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake --color=
[ 54%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_transform.cc
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/io/pymod/CMakeFiles/_ost_io.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 54%] Built target _ost_io
make  -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gfx/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/DependInfo.cmake --color=
[ 54%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o
Scanning dependencies of target ost_gfx_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/test_normalizer.cc
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake --color=
[ 54%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/tests/tests.cc
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/gui/src/CMakeFiles/ost_gui.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 87%] Built target ost_gui
make  -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/ost_io_tests.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_io_tests
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 87%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/img/alg/tests/tests.cc
[ 88%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_clustal.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_clustal.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_clustal.cc
[ 88%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_io_pdb.cc
[ 89%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/tests/test_gfx_node.cc
[ 89%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_io_crd.cc
[ 89%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_io_dcd.cc
[ 89%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_io_sdf.cc
[ 89%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_io_sequence_profile.cc
[ 89%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_pir.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_pir.cc
[ 89%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_iomanager.cc
[ 89%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/tests.cc
[ 90%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_entity.cc
[ 90%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_ics.cc
[ 90%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/tests/test_aligned_region.cc
[ 91%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/tests/test_alignment.cc
[ 91%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_star_parser.cc
[ 91%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_mmcif_reader.cc
[ 92%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_mmcif_info.cc
[ 92%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/tests/test_heuristic_conop.cc
[ 92%] Linking CXX executable ../../../../tests/ost_img_alg_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_img_alg_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_img_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
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make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_mol_alg_tests
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make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 92%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/tests/test_superposition.cc
[ 92%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_io_img.cc
[ 92%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -c /srv/build/openstructure-2.2.0/modules/io/tests/test_exceptions.cc
[ 92%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_color.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/tests/test_color.cc
[ 92%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -c /srv/build/openstructure-2.2.0/modules/gfx/tests/test_map_octree.cc
[ 92%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/tests/tests.cc
[ 92%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/tests/test_consistency_checks.cc
[ 93%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/alg/tests/test_partial_sec_struct_assignment.cc
[ 93%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_query.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_query.cc
[ 93%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/tests/test_profile.cc
[ 93%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/base/tests/tests.cc
[ 93%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_surface.cc
[ 93%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_residue.cc
[ 93%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_view.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_view.cc
[ 93%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_transfer_connectivity.cc
[ 93%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/tests/tests.cc
[ 93%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/tests/test_rule_based_conop.cc
[ 93%] Linking CXX executable ../../../tests/ost_gfx_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_gfx_tests.dir/tests.cc.o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -o ../../../tests/ost_gfx_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_gfx.so.2.2.0 ../../../stage/lib/libost_io.so.2.2.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 93%] Built target ost_gfx_tests
make  -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_seq_alg_tests
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make  -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 93%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/tests/test_distance_analysis.cc
[ 93%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/tests/test_merge_pairwise_alignments.cc
[ 93%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_conop_tests.dir/helper.cc.o -c /srv/build/openstructure-2.2.0/modules/conop/tests/helper.cc
[ 93%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/test_view_op.cc
[ 93%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_mol_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/mol/base/tests/tests.cc
[ 93%] Linking CXX executable ../../../../tests/ost_mol_alg_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -o ../../../../tests/ost_mol_alg_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_io.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
[ 93%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/tests/test_sequence_identity.cc
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 93%] Built target ost_mol_alg_tests
make  -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gui/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/gui/pymod/CMakeFiles/_ost_gui.dir/build'.
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] Built target _ost_gui
make  -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gfx/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_gfx_tests_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] running checks for module gfx
cd /srv/build/openstructure-2.2.0/modules/gfx/tests && env OST_ROOT=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_gfx_tests
Running 13 test cases...
[ 95%] Linking CXX executable ../../../../tests/ost_seq_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o CMakeFiles/ost_seq_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_seq.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
make  -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/img/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_img_alg_tests_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] running checks for module img_alg
cd /srv/build/openstructure-2.2.0/modules/img/alg/tests && env OST_ROOT=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_img_alg_tests
Running 25 test cases...

*** No errors detected
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] Built target ost_img_alg_tests_run
make  -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_mol_alg_tests_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] running checks for module mol_alg
cd /srv/build/openstructure-2.2.0/modules/mol/alg/tests && env OST_ROOT=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_mol_alg_tests
Running 4 test cases...
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] Built target ost_seq_tests
make  -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend

*** No errors detected
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] Built target ost_mol_alg_tests_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/depend
make  -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/DependInfo.cmake --color=
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost_config
Scanning dependencies of target ost_seq_tests_run
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin/ost
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] running checks for module seq
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/bin/dng
cd /srv/build/openstructure-2.2.0/modules/seq/base/tests && env OST_ROOT=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_seq_tests
Running 32 test cases...
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/ost_startup.py

*** No errors detected
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.2.0/scripts/dng_startup.py /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages//ost/dng_startup.py
[ 95%] Built target ost_seq_tests_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -c /srv/build/openstructure-2.2.0/modules/seq/alg/tests/tests.cc
[ 95%] Built target ost_scripts
make  -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_weight_matrix.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] running checks test_weight_matrix.py
cd /srv/build/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/seq/alg/tests/test_weight_matrix.py"
..
----------------------------------------------------------------------
Ran 2 tests in 0.002s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] Built target test_weight_matrix.py_run
make  -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/test_stutil.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_stutil.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] running checks test_stutil.py
cd /srv/build/openstructure-2.2.0/modules/base/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/base/tests/test_stutil.py"
......
----------------------------------------------------------------------
Ran 6 tests in 0.005s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] Built target test_stutil.py_run
make  -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/test_table.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_table.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] running checks test_table.py
cd /srv/build/openstructure-2.2.0/modules/base/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/base/tests/test_table.py"
make  -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/test_log.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_log.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] running checks test_log.py
cd /srv/build/openstructure-2.2.0/modules/base/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/base/tests/test_log.py"
....
----------------------------------------------------------------------
Ran 4 tests in 0.004s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] Built target test_log.py_run
make  -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_naccess.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] running checks test_naccess.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_naccess.py"
Could not find NACCESS, could not test binding...
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
..............[ 95%] Built target test_naccess.py_run
....make  -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/depend
..make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/DependInfo.cmake --color=
...Scanning dependencies of target test_clustalw.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 95%] running checks test_clustalw.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_clustalw.py"
make  -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_blast.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
.[ 96%] running checks test_blast.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_blast.py"
make  -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_cadscore.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_cadscore.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_cadscore.py"
...............Could not find blast executable: ignoring unit tests
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_blast.py_run
/usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/enrichment-out.png'>
  method()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
make  -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/depend
.make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_hhblits.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
Could not find CAD score classic executables: ignoring unit tests
.[ 96%] running checks test_hhblits.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_hhblits.py"
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ost/table.py:2963: MatplotlibDeprecationWarning: The 'basex' parameter of __init__() has been renamed 'base' since Matplotlib 3.3; support for the old name will be dropped two minor releases later.
  plt.xscale('log', basex=10)
.make  -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/DependInfo.cmake --color=
No HHblits installation found: skip unit tests
.Scanning dependencies of target test_kclust.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_kclust.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_kclust.py"
[ 96%] Built target test_hhblits.py_run
make  -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/DependInfo.cmake --color=
.Scanning dependencies of target test_msms.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_msms.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_msms.py"
...
----------------------------------------------------------------------
Ran 7 tests in 3.858s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_clustalw.py_run
make  -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_tmtools.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_tmtools.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_tmtools.py"
Could not find kClust executable: ignoring unit tests
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_kclust.py_run
make  -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/DependInfo.cmake --color=
Could not find msms executable: ignoring unit tests
Scanning dependencies of target test_ialign.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
.[ 97%] running checks test_ialign.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_ialign.py"
[ 97%] Built target test_msms.py_run
make  -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_hbplus.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 97%] running checks test_hbplus.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_hbplus.py"
Could not find tmalign executable: ignoring unit tests
.Could not find tmalign executable: ignoring unit tests
.
----------------------------------------------------------------------
Ran 2 tests in 0.194s

OK
/usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-out.png'>
  method()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
.make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 97%] Built target test_tmtools.py_run
make  -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_lga.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
Could not find ialign master perl script: ignoring unit tests
.
----------------------------------------------------------------------
Ran 1 test in 0.106s

OK
[ 97%] running checks test_lga.py
cd /srv/build/openstructure-2.2.0/modules/bindings/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/bindings/tests/test_lga.py"
Could not find hbplus, could not test binding...
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 97%] Built target test_ialign.py_run
make  -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/conop/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests/CMakeFiles/test_processor.py_run.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
Scanning dependencies of target test_processor.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build
[ 97%] Built target test_hbplus.py_run
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/db/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/DependInfo.cmake --color=
/usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-same-val-out.png'>
  method()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
..............[ 97%] running checks test_processor.py
...cd /srv/build/openstructure-2.2.0/modules/conop/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/conop/tests/test_processor.py"
Scanning dependencies of target test_linear_db.py_run
/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/ost/table.py:2186: DeprecationWarning: scipy.isnan is deprecated and will be removed in SciPy 2.0.0, use numpy.isnan instead
  if scipy.isnan(correl):
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
.make  -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build
.......make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
.................
----------------------------------------------------------------------
Ran 83 tests in 8.586s

OK
[ 97%] running checks test_linear_db.py
cd /srv/build/openstructure-2.2.0/modules/db/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/db/tests/test_linear_db.py"
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
...
----------------------------------------------------------------------
Ran 3 tests in 0.014s

OK
.
----------------------------------------------------------------------
Ran 1 test in 0.002s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 97%] Built target test_table.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/geom/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/geom/tests/CMakeFiles/test_geom.py_run.dir/DependInfo.cmake --color=
[ 97%] Built target test_linear_db.py_run
make  -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/gfx/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/DependInfo.cmake --color=
[ 97%] Built target test_processor.py_run
make  -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/depend
Scanning dependencies of target test_geom.py_run
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
Scanning dependencies of target test_gfx.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build
Scanning dependencies of target test_io_pdb.py_run
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build
[ 97%] running checks test_geom.py
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/modules/geom/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/geom/tests/test_geom.py"
Could not find lga executable: ignoring unit tests
.
----------------------------------------------------------------------
Ran 1 test in 0.139s

OK
[ 98%] running checks test_gfx.py
cd /srv/build/openstructure-2.2.0/modules/gfx/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/gfx/tests/test_gfx.py"
[ 98%] running checks test_io_pdb.py
cd /srv/build/openstructure-2.2.0/modules/io/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/io/tests/test_io_pdb.py"
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target test_lga.py_run
make  -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/io/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/DependInfo.cmake --color=
........
----------------------------------------------------------------------
Ran 8 tests in 0.015s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_io_mmcif.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target test_geom.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/depend
Scanning dependencies of target test_pdbize.py_run
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] running checks test_io_mmcif.py
cd /srv/build/openstructure-2.2.0/modules/io/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/io/tests/test_io_mmcif.py"
Scanning dependencies of target test_convenient_superpose.py_run
[ 98%] running checks test_pdbize.py
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build
cd /srv/build/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/mol/alg/tests/test_pdbize.py"
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
..[ 98%] running checks test_convenient_superpose.py
....
----------------------------------------------------------------------
Ran 6 tests in 0.012s

OK
cd /srv/build/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/mol/alg/tests/test_convenient_superpose.py"
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target test_gfx.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_sec_struct.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] running checks test_sec_struct.py
cd /srv/build/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/mol/alg/tests/test_sec_struct.py"
...s
----------------------------------------------------------------------
Ran 4 tests in 0.013s

OK (skipped=1)
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
........
----------------------------------------------------------------------
Ran 8 tests in 0.041s

OK
[ 98%] Built target test_io_pdb.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
Scanning dependencies of target test_hbond.py_run
[ 98%] Built target test_pdbize.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build
make  -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/DependInfo.cmake --color=
.[ 98%] running checks test_hbond.py
Scanning dependencies of target test_accessibility.py_run
cd /srv/build/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/mol/alg/tests/test_hbond.py"
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
.[ 98%] running checks test_accessibility.py
cd /srv/build/openstructure-2.2.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/mol/alg/tests/test_accessibility.py"
s
----------------------------------------------------------------------
Ran 1 test in 0.001s

OK (skipped=1)
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target test_sec_struct.py_run
make  -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_seq.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] running checks test_seq.py
cd /srv/build/openstructure-2.2.0/modules/seq/base/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/seq/base/tests/test_seq.py"
..
----------------------------------------------------------------------
Ran 2 tests in 0.076s

OK
smake[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/DependInfo.cmake --color=
[ 98%] Built target test_hbond.py_run
make  -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/DependInfo.cmake --color=
Scanning dependencies of target test_alignment_from_chain_view.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
Scanning dependencies of target test_local_align.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] running checks test_alignment_from_chain_view.py
cd /srv/build/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/seq/alg/tests/test_alignment_from_chain_view.py"
[ 98%] running checks test_local_align.py
cd /srv/build/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/seq/alg/tests/test_local_align.py"
make  -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/DependInfo.cmake --color=
..............
----------------------------------------------------------------------
Ran 14 tests in 0.039s

OK
Scanning dependencies of target test_semiglobal_align.py_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] running checks test_semiglobal_align.py
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
.
----------------------------------------------------------------------
Ran 1 test in 0.011s

OK
cd /srv/build/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/seq/alg/tests/test_semiglobal_align.py"
[ 98%] Built target test_seq.py_run
make  -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/depend
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/DependInfo.cmake --color=
[ 98%] Built target test_alignment_from_chain_view.py_run
Scanning dependencies of target test_global_align.py_run
make  -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
.Scanning dependencies of target test_renumber.py_run
[ 98%] running checks test_global_align.py
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build
cd /srv/build/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/seq/alg/tests/test_global_align.py"
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] running checks test_renumber.py
cd /srv/build/openstructure-2.2.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib/python3.9/dist-packages/  /usr/bin/python3.9 /srv/build/openstructure-2.2.0/modules/seq/alg/tests/test_renumber.py"
...
----------------------------------------------------------------------
Ran 3 tests in 0.007s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
.[ 98%] Built target test_local_align.py_run
.......s
----------------------------------------------------------------------
Ran 10 tests in 3.508s

OK (skipped=1)
.
----------------------------------------------------------------------
Ran 1 test in 0.005s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target test_semiglobal_align.py_run
[ 98%] Built target test_io_mmcif.py_run
...
----------------------------------------------------------------------
Ran 3 tests in 0.006s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
..[ 98%] Built target test_global_align.py_run
......
----------------------------------------------------------------------
Ran 8 tests in 0.317s

OK
.make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target test_renumber.py_run
......
----------------------------------------------------------------------
Ran 9 tests in 9.187s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target test_convenient_superpose.py_run
Could not find NACCESS, could not compare Accessiblity function...
.
----------------------------------------------------------------------
Ran 2 tests in 9.613s

OK (skipped=1)
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target test_accessibility.py_run
[ 98%] Linking CXX executable ../../../../tests/ost_seq_alg_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_alg_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_io.so.2.2.0 ../../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../../stage/lib/libost_conop.so.2.2.0 ../../../../stage/lib/libost_db.so.2.2.0 ../../../../stage/lib/libost_seq.so.2.2.0 ../../../../stage/lib/libost_mol.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.2.0 ../../../../stage/lib/libost_img.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target ost_seq_alg_tests
make  -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_seq_alg_tests_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] running checks for module seq_alg
cd /srv/build/openstructure-2.2.0/modules/seq/alg/tests && env OST_ROOT=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_seq_alg_tests
Running 19 test cases...

*** No errors detected
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target ost_seq_alg_tests_run
[ 98%] Linking CXX executable ../../../../tests/ost_mol_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o CMakeFiles/ost_mol_tests.dir/test_query.cc.o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o CMakeFiles/ost_mol_tests.dir/test_view.cc.o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o CMakeFiles/ost_mol_tests.dir/tests.cc.o -o ../../../../tests/ost_mol_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_mol.so.2.2.0 ../../../../stage/lib/libost_info.so.2.2.0 ../../../../stage/lib/libost_base.so.2.2.0 ../../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[ 98%] Built target ost_mol_tests
make  -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/depend
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.2.0 /srv/build/openstructure-2.2.0/modules/mol/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/DependInfo.cmake --color=
Scanning dependencies of target ost_mol_tests_run
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build
make[4]: Entering directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[100%] running checks for module mol
cd /srv/build/openstructure-2.2.0/modules/mol/base/tests && env OST_ROOT=/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/tests/ost_mol_tests
Running 70 test cases...
./modules/mol/base/tests/test_ics.cc(216): error: in "mol_base/ics_settorsion_linear_unbuffered": difference{4} between s.t2.GetAngle(){-2.3561945} and Real(3.14159265358979323846/4){0.785398185} exceeds 0.0001%

*** 1 failure is detected in the test module "ost_mol_base"
make[4]: *** [modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make:80: modules/mol/base/tests/CMakeFiles/ost_mol_tests_run] Error 201
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: *** [CMakeFiles/Makefile2:5452: modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/all] Error 2
make[3]: *** Waiting for unfinished jobs....
[100%] Linking CXX executable ../../../tests/ost_conop_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o CMakeFiles/ost_conop_tests.dir/tests.cc.o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o CMakeFiles/ost_conop_tests.dir/helper.cc.o -o ../../../tests/ost_conop_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so 
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[100%] Built target ost_conop_tests
[100%] Linking CXX executable ../../../tests/ost_io_tests
cd /srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro CMakeFiles/ost_io_tests.dir/test_clustal.cc.o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o CMakeFiles/ost_io_tests.dir/test_pir.cc.o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o CMakeFiles/ost_io_tests.dir/tests.cc.o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -o ../../../tests/ost_io_tests   -L/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_io.so.2.2.0 ../../../stage/lib/libost_mol_alg.so.2.2.0 ../../../stage/lib/libost_conop.so.2.2.0 ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so /usr/lib/aarch64-linux-gnu/libboost_thread.so -lpthread /usr/lib/aarch64-linux-gnu/libboost_chrono.so /usr/lib/aarch64-linux-gnu/libboost_date_time.so /usr/lib/aarch64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.2.0 ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 ../../../stage/lib/libost_img_alg.so.2.2.0 ../../../stage/lib/libost_img.so.2.2.0 ../../../stage/lib/libost_info.so.2.2.0 ../../../stage/lib/libost_base.so.2.2.0 ../../../stage/lib/libost_geom.so.2.2.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so /usr/lib/aarch64-linux-gnu/libboost_system.so /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so /usr/lib/aarch64-linux-gnu/libboost_regex.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so 
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[100%] Built target ost_io_tests
.
----------------------------------------------------------------------
Ran 2 tests in 69.049s

OK
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
[100%] Built target test_cadscore.py_run
Killed
make[4]: *** [modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make:80: modules/gfx/tests/CMakeFiles/ost_gfx_tests_run] Error 137
make[4]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[3]: *** [CMakeFiles/Makefile2:4027: modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/all] Error 2
make[3]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:1881: CMakeFiles/check.dir/rule] Error 2
make[2]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
make[1]: *** [Makefile:221: check] Error 2
make[1]: Leaving directory '/srv/build/openstructure-2.2.0/obj-aarch64-linux-gnu'
dh_auto_test: error: cd obj-aarch64-linux-gnu && make -j16 check ARGS\+=-j16 returned exit code 2
make: *** [debian/rules:4: binary-arch] Error 255
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
Command `dpkg-buildpackage --changes-option=-DDistribution=landing -B -mDebichem Team <debichem-devel@lists.alioth.debian.org> -eDebichem Team <debichem-devel@lists.alioth.debian.org>` failed.
Command debspawn build --no-buildlog --arch=arm64 --results-dir=/var/lib/lkspark/workspaces/54786b81-103d-4141-9c21-f8e62e895fd9 --only=arch --maintainer=Debichem Team <debichem-devel@lists.alioth.debian.org> landing openstructure_2.2.0-6.dsc failed with error code 2