debspawn 0.6.3 on cumin at 2023-06-21 20:35:09 UTC+0000 dpkg-source: info: extracting rapmap in rapmap-0.15.0+dfsg dpkg-source: info: unpacking rapmap_0.15.0+dfsg.orig.tar.xz dpkg-source: info: unpacking rapmap_0.15.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-debian-libs.patch dpkg-source: info: applying use_shared_libs.patch dpkg-source: info: applying avoid_privacy_breach.patch dpkg-source: info: applying spelling dpkg-source: info: applying portable_pause dpkg-source: info: applying no_gomp_needed dpkg-source: info: applying simde ╔═══════════════════════╗ ║ Package build ║ ╚═══════════════════════╝ Package: rapmap Version: 0.15.0+dfsg-3 Distribution: landing Architecture: arm64 Free space in workspace: 84.4GiB ┌───────────────────────────────────────┐ │ Preparing container for build │ └───────────────────────────────────────┘ Get:1 https://repo.pureos.net/pureos landing InRelease [8717 B] Get:2 https://repo.pureos.net/pureos landing/main all Packages [3713 kB] Fetched 3722 kB in 3s (1372 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dpkg-dev libdpkg-perl 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/1960 kB of archives. After this operation, 1529 kB disk space will be freed. debconf: delaying package configuration, since apt-utils is not installed (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../dpkg-dev_1.21.22pureos1_all.deb ... Unpacking dpkg-dev (1.21.22pureos1) over (1.20.12pureos1) ... Preparing to unpack .../libdpkg-perl_1.21.22pureos1_all.deb ... Unpacking libdpkg-perl (1.21.22pureos1) over (1.20.12pureos1) ... Setting up libdpkg-perl (1.21.22pureos1) ... Setting up dpkg-dev (1.21.22pureos1) ... Reading package lists... Building dependency tree... Reading state information... build-essential is already the newest version (12.9). dpkg-dev is already the newest version (1.21.22pureos1). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌───────────────────────────────────────────────┐ │ Installing package build-dependencies │ └───────────────────────────────────────────────┘ Note, using directory './' to get the build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils catch2 cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbrotli1 libcereal-dev libcurl4 libdebhelper-perl libdivsufsort-dev libdivsufsort3 libelf1 libfile-stripnondeterminism-perl libfmt-dev libfmt9 libicu72 libjellyfish-2.0-2 libjellyfish-2.0-dev libjemalloc-dev libjemalloc2 libjsoncpp25 libldap-2.5-0 libmagic-mgc libmagic1 libncursesw6 libnghttp2-14 libpipeline1 libpkgconf3 libproc2-0 libpsl5 libpython3-stdlib libpython3.11-stdlib libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsimde-dev libsparsehash-dev libspdlog-dev libspdlog1.10 libsqlite3-0 libssh2-1 libsub-override-perl libtclap-dev libtool libuchardet0 libuv1 libxml2 m4 man-db media-types pkg-config pkgconf pkgconf-bin po-debconf procps python3 python3-importlib-metadata python3-markdown python3-more-itertools python3-typing-extensions python3-zipp python3.11 rapidjson-dev readline-common sensible-utils zlib1g-dev 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 3914 kB/40.6 MB of archives. After this operation, 169 MB of additional disk space will be used. Get:1 https://repo.pureos.net/pureos landing/main arm64 libcereal-dev arm64 1.3.2+dfsg-4 [221 kB] Get:2 https://repo.pureos.net/pureos landing/main arm64 libjellyfish-2.0-2 arm64 2.3.0-15+b3 [58.7 kB] Get:3 https://repo.pureos.net/pureos landing/main arm64 libjellyfish-2.0-dev arm64 2.3.0-15+b3 [133 kB] Get:4 https://repo.pureos.net/pureos landing/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB] Get:5 https://repo.pureos.net/pureos landing/main all python3-typing-extensions all 4.4.0-1 [45.2 kB] Get:6 https://repo.pureos.net/pureos landing/main all python3-zipp all 1.0.0-6 [6696 B] Get:7 https://repo.pureos.net/pureos landing/main all python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get:8 https://repo.pureos.net/pureos landing/main all python3-markdown all 3.4.1-2 [64.7 kB] Fetched 3914 kB in 1s (5779 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package media-types. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13167 files and directories currently installed.) Preparing to unpack .../00-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../01-libncursesw6_6.4-4_arm64.deb ... Unpacking libncursesw6:arm64 (6.4-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../02-readline-common_8.2-1.3_all.deb ... 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Setting up libjemalloc2:arm64 (5.3.0-1) ... Setting up libsparsehash-dev (2.0.3-2) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Setting up libjellyfish-2.0-2:arm64 (2.3.0-15+b3) ... Setting up libjemalloc-dev (5.3.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:arm64 (1.8.1-1) ... Setting up libuv1:arm64 (1.44.2-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libproc2-0:arm64 (2:4.0.2-3) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:arm64 (1.9.5-4) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libncursesw6:arm64 (6.4-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up libtclap-dev (1.2.5-1+b1) ... Setting up libfmt9:arm64 (9.1.0+ds1-2) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:arm64 (1.4.3-3) ... 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Setting up python3-importlib-metadata (4.12.0-1) ... Processing triggers for libc-bin (2.36-9) ... ┌───────────────┐ │ Build │ └───────────────┘ dpkg-buildpackage: info: source package rapmap dpkg-buildpackage: info: source version 0.15.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: host architecture arm64  dpkg-source --before-build .  debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/srv/build/rapmap-0.15.0+dfsg' dh_clean README.html sample_data/sample_quasi_index/ sample_data/sample_quasi_index_ph/ sample_data/sample_quasi_map.sam sample_data/sample_quasi_map_ph.sam make[1]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg'  debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/srv/build/rapmap-0.15.0+dfsg' dh_auto_configure -- -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true .. CC: gcc CC version:  -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done version: 0.6.0 -- DISABLING NATIVE ARCH. -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE Making Default build type -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.13") -- Found Cereal: /usr/include (Required is at least version "1.2.2") -- Cereal found (include: /usr/include) -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Found Jemalloc: /usr/lib/aarch64-linux-gnu/libjemalloc.so (found version "5.3.0-0-g54eaed1d8b56b1aa528be3bdd1877e59c56fa90c") Found Jemalloc library --- using this memory allocator CPACK_SOURCE_IGNORE_FILES = .git/ CMAKE_SYSTEM_PROCESSOR: aarch64 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED JELLYFISH_ROOT  -- Build files have been written to: /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/srv/build/rapmap-0.15.0+dfsg' dh_auto_build cd obj-aarch64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/srv/build/rapmap-0.15.0+dfsg -B/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/depend make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/depend make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/rapmap-0.15.0+dfsg /srv/build/rapmap-0.15.0+dfsg/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp_basic.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/rapmap-0.15.0+dfsg /srv/build/rapmap-0.15.0+dfsg/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp_sse2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/build make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/build make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 15%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o [ 11%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o [ 15%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o [ 15%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o [ 19%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o [ 23%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o [ 30%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o [ 30%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o [ 34%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o [ 38%] Building CXX object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd2_sse.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extz2_sse.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extz.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extf2_sse.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg2.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg2_sse.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target ksw2pp_sse2 make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target ksw2pp_basic make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/depend make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/rapmap-0.15.0+dfsg /srv/build/rapmap-0.15.0+dfsg/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp.dir/DependInfo.cmake --color= make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/build make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 42%] Linking CXX static library libksw2pp.a cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/ksw2pp.dir/cmake_clean_target.cmake cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksw2pp.dir/link.txt --verbose=1 /usr/bin/ar qc libksw2pp.a CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o /usr/bin/ranlib libksw2pp.a make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target ksw2pp make -f src/CMakeFiles/rapmap.dir/build.make src/CMakeFiles/rapmap.dir/depend make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/rapmap-0.15.0+dfsg /srv/build/rapmap-0.15.0+dfsg/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/rapmap.dir/DependInfo.cmake --color= make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/rapmap.dir/build.make src/CMakeFiles/rapmap.dir/build make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 57%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o [ 57%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapUtils.cpp.o [ 57%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o [ 61%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o [ 61%] Building CXX object src/CMakeFiles/rapmap.dir/RapMap.cpp.o [ 65%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o [ 73%] Building CXX object src/CMakeFiles/rapmap.dir/HitManager.cpp.o [ 73%] Building CXX object src/CMakeFiles/rapmap.dir/FastxParser.cpp.o [ 76%] Building CXX object src/CMakeFiles/rapmap.dir/rank9b.cpp.o [ 80%] Building CXX object src/CMakeFiles/rapmap.dir/stringpiece.cc.o [ 84%] Building C object src/CMakeFiles/rapmap.dir/xxhash.c.o [ 88%] Building C object src/CMakeFiles/rapmap.dir/bit_array.c.o [ 92%] Building CXX object src/CMakeFiles/rapmap.dir/edlib.cpp.o [ 96%] Building CXX object src/CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapUtils.cpp.o -MF CMakeFiles/rapmap.dir/RapMapUtils.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapUtils.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMapUtils.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMap.cpp.o -MF CMakeFiles/rapmap.dir/RapMap.cpp.o.d -o CMakeFiles/rapmap.dir/RapMap.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMap.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o -MF CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMapFileSystem.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndex.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/HitManager.cpp.o -MF CMakeFiles/rapmap.dir/HitManager.cpp.o.d -o CMakeFiles/rapmap.dir/HitManager.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/HitManager.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/FastxParser.cpp.o -MF CMakeFiles/rapmap.dir/FastxParser.cpp.o.d -o CMakeFiles/rapmap.dir/FastxParser.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/FastxParser.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/rank9b.cpp.o -MF CMakeFiles/rapmap.dir/rank9b.cpp.o.d -o CMakeFiles/rapmap.dir/rank9b.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/rank9b.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/stringpiece.cc.o -MF CMakeFiles/rapmap.dir/stringpiece.cc.o.d -o CMakeFiles/rapmap.dir/stringpiece.cc.o -c /srv/build/rapmap-0.15.0+dfsg/src/stringpiece.cc cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/rapmap.dir/xxhash.c.o -MF CMakeFiles/rapmap.dir/xxhash.c.o.d -o CMakeFiles/rapmap.dir/xxhash.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/xxhash.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/rapmap.dir/bit_array.c.o -MF CMakeFiles/rapmap.dir/bit_array.c.o.d -o CMakeFiles/rapmap.dir/bit_array.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/bit_array.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/edlib.cpp.o -MF CMakeFiles/rapmap.dir/edlib.cpp.o.d -o CMakeFiles/rapmap.dir/edlib.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/edlib.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -MF CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o.d -o CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/metro/metrohash64.cpp In file included from /srv/build/rapmap-0.15.0+dfsg/include/zstr/zstr.hpp:16, from /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:62: /srv/build/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp: In static member function ‘static void strict_fstream::detail::static_method_holder::check_peek(std::istream*, const std::string&, std::ios_base::openmode)’: /srv/build/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp:128:39: warning: catching polymorphic type ‘class std::ios_base::failure’ by value []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcatch-value=-Wcatch-value=]8;;] 128 | catch (std::ios_base::failure e) {} | ^ In file included from /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/sha2.hpp:9, from /srv/build/rapmap-0.15.0+dfsg/include/digestpp/digestpp.hpp:6, from /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:73: In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript ‘const unsigned int[0]’ is partly outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /srv/build/rapmap-0.15.0+dfsg/include/digestpp/digestpp.hpp:5: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [1, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 4 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [2, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 8 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [3, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 12 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [4, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 16 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [5, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 20 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [6, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 24 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [7, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 28 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [8, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 32 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [9, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 36 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [10, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 40 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [11, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 44 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [12, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 48 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [13, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 52 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [14, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 56 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:578:35: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [15, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 60 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = long unsigned int; long unsigned int O = 0]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = long unsigned int; long unsigned int O = 0]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:581:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript ‘const long unsigned int[0]’ is partly outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript ‘const unsigned int[0]’ is partly outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [1, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 4 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [2, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 8 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [3, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 12 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [4, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 16 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [5, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 20 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [6, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 24 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [7, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 28 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [8, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 32 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [9, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 36 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [10, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 40 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [11, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 44 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [12, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 48 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [13, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 52 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [14, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 56 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = unsigned int; long unsigned int O = 256]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:580:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript [15, 2305843009213693951] is outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: at offset 60 into object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = long unsigned int; long unsigned int O = 0]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = long unsigned int; long unsigned int O = 0]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:671:33: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript ‘const long unsigned int[0]’ is partly outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unused-local-typedef’ may have been intended to silence earlier diagnostics At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unused-local-typedef’ may have been intended to silence earlier diagnostics [100%] Linking CXX executable rapmap cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/rapmap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wl,-z,relro -Wl,-z,now CMakeFiles/rapmap.dir/RapMap.cpp.o CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o CMakeFiles/rapmap.dir/RapMapUtils.cpp.o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o CMakeFiles/rapmap.dir/HitManager.cpp.o CMakeFiles/rapmap.dir/FastxParser.cpp.o CMakeFiles/rapmap.dir/rank9b.cpp.o CMakeFiles/rapmap.dir/stringpiece.cc.o CMakeFiles/rapmap.dir/xxhash.c.o CMakeFiles/rapmap.dir/bit_array.c.o CMakeFiles/rapmap.dir/edlib.cpp.o CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -o rapmap -L/srv/build/rapmap-0.15.0+dfsg/lib -L/srv/build/rapmap-0.15.0+dfsg/external/install/lib -Wl,-rpath,"\$ORIGIN/../lib:\$ORIGIN/../../lib:\$ORIGIN/:\$ORIGIN/../../external/install/lib" /usr/lib/aarch64-linux-gnu/libz.so -ldivsufsort -ldivsufsort64 -lm -lz /usr/lib/aarch64-linux-gnu/libjemalloc.so -lrt libksw2pp.a -ldl /usr/bin/ld: libksw2pp.a(KSW2Aligner.cpp.o): in function `ksw2pp::KSW2Aligner::operator()(unsigned char const*, int, unsigned char const*, int, ksw_extz_t*, ksw2pp::EnumToType<(ksw2pp::KSW2AlignmentType)2>)': ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:362: undefined reference to `ksw_extz2_sse2' /usr/bin/ld: ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:358: undefined reference to `ksw_extz2_sse41' /usr/bin/ld: libksw2pp.a(KSW2Aligner.cpp.o): in function `ksw2pp::KSW2Aligner::operator()(char const*, int, char const*, int, ksw_extz_t*, ksw2pp::EnumToType<(ksw2pp::KSW2AlignmentType)2>)': ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:227: undefined reference to `ksw_extz2_sse2' /usr/bin/ld: ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:223: undefined reference to `ksw_extz2_sse41' collect2: error: ld returned 1 exit status make[4]: *** [src/CMakeFiles/rapmap.dir/build.make:311: src/rapmap] Error 1 make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:134: src/CMakeFiles/rapmap.dir/all] Error 2 make[3]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[2]: *** [Makefile:169: all] Error 2 make[2]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:22: override_dh_auto_build] Error 2 make[1]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg' make: *** [debian/rules:16: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 Command `dpkg-buildpackage --changes-option=-DDistribution=landing -B -mDebian Med Packaging Team -eDebian Med Packaging Team ` failed. Command debspawn build --no-buildlog --arch=arm64 --results-dir=/var/lib/lkspark/workspaces/5f7e25a5-3406-4cda-ad2c-877d6da16b4d --only=arch --maintainer=Debian Med Packaging Team landing rapmap_0.15.0+dfsg-3.dsc failed with error code 2