debspawn 0.6.5 on estragon at 2025-03-18 16:30:40 UTC-0400 dpkg-source: info: extracting rapmap in rapmap-0.15.0+dfsg dpkg-source: info: unpacking rapmap_0.15.0+dfsg.orig.tar.xz dpkg-source: info: unpacking rapmap_0.15.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-debian-libs.patch dpkg-source: info: applying use_shared_libs.patch dpkg-source: info: applying avoid_privacy_breach.patch dpkg-source: info: applying spelling dpkg-source: info: applying portable_pause dpkg-source: info: applying no_gomp_needed dpkg-source: info: applying simde ╔═══════════════════════╗ ║ Package build ║ ╚═══════════════════════╝ Package: rapmap Version: 0.15.0+dfsg-4 Distribution: landing Architecture: arm64 Free space in workspace: 173.4GiB ┌───────────────────────────────────────┐ │ Preparing container for build │ └───────────────────────────────────────┘ Get:1 https://repo.pureos.net/pureos landing InRelease [9625 B] Get:2 https://repo.pureos.net/pureos landing/main arm64 Packages [4516 kB] Get:3 https://repo.pureos.net/pureos landing/main all Packages [3954 kB] Fetched 8480 kB in 5s (1798 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libapt-pkg6.0t64 libgnutls30t64 libperl5.38t64 libpython3.12-minimal perl-modules-5.38 python3.12-minimal Use 'apt autoremove' to remove them. The following NEW packages will be installed: libapt-pkg7.0 libperl5.40 libpython3.13-minimal perl-modules-5.40 python3.13-minimal sqv The following packages will be upgraded: adduser apt base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential ca-certificates coreutils cpp-12 cpp-14 cpp-14-aarch64-linux-gnu dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot g++-12 g++-14 g++-14-aarch64-linux-gnu gcc-12 gcc-12-base gcc-14 gcc-14-aarch64-linux-gnu gcc-14-base gpgv grep gzip init-system-helpers libacl1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdb5.3t64 libdebconfclient0 libdpkg-perl libeatmydata1 libexpat1 libext2fs2t64 libfakeroot libffi8 libgcc-12-dev libgcc-14-dev libgcc-s1 libgcrypt20 libgmp10 libgnutls30t64 libgomp1 libgpg-error0 libgprofng0 libgssapi-krb5-2 libhogweed6t64 libhwasan0 libidn2-0 libitm1 libjansson4 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libnettle8t64 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpython3.12-minimal libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libss2 libssl3t64 libstdc++-12-dev libstdc++-14-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-dev libtirpc3t64 libtsan2 libubsan1 libudev1 libunistring5 libuuid1 libxxhash0 libzstd1 linux-libc-dev login login.defs logsave make mawk mount ncurses-base ncurses-bin openssl openssl-provider-legacy passwd patch perl perl-base python3-minimal python3.12-minimal rpcsvc-proto sed sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 149 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 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Leaving 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.40.4-5) over (2.40.2-9) ... Preparing to unpack .../libnettle8t64_3.10.1-1_arm64.deb ... Unpacking libnettle8t64:arm64 (3.10.1-1) over (3.10-1) ... Setting up libnettle8t64:arm64 (3.10.1-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19500 files and directories currently installed.) Preparing to unpack .../liblzma5_5.6.4-1_arm64.deb ... Unpacking liblzma5:arm64 (5.6.4-1) over (5.6.2-2) ... Setting up liblzma5:arm64 (5.6.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19500 files and directories currently installed.) Preparing to unpack .../libudev1_257.4-3_arm64.deb ... Unpacking libudev1:arm64 (257.4-3) over (256.7-1) ... Setting up libudev1:arm64 (257.4-3) ... Selecting previously unselected package libapt-pkg7.0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19500 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_2.9.33_arm64.deb ... Unpacking libapt-pkg7.0:arm64 (2.9.33) ... Setting up libapt-pkg7.0:arm64 (2.9.33) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19549 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.277_arm64.deb ... Unpacking libdebconfclient0:arm64 (0.277) over (0.272) ... Setting up libdebconfclient0:arm64 (0.277) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19551 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-3_arm64.deb ... Unpacking libattr1:arm64 (1:2.5.2-3) over (1:2.5.2-1) ... Setting up libattr1:arm64 (1:2.5.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19551 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.8-1_all.deb ... Unpacking libsemanage-common (3.8-1) over (3.7-2) ... Setting up libsemanage-common (3.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19551 files and directories currently installed.) Preparing to unpack .../libsepol2_3.8-1_arm64.deb ... Unpacking libsepol2:arm64 (3.8-1) over (3.7-1) ... Setting up libsepol2:arm64 (3.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19551 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.8-1+b1_arm64.deb ... Unpacking libsemanage2:arm64 (3.8-1+b1) over (3.7-2) ... Setting up libsemanage2:arm64 (3.8-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19552 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.17.3-1_arm64.deb ... Unpacking passwd (1:4.17.3-1) over (1:4.16.0-4) ... Setting up passwd (1:4.17.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19549 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.145_all.deb ... Unpacking adduser (3.145) over (3.137) ... Setting up adduser (3.145) ... Installing new version of config file /etc/adduser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19531 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-2+b1_arm64.deb ... Unpacking libseccomp2:arm64 (2.5.5-2+b1) over (2.5.5-1+b1) ... Setting up libseccomp2:arm64 (2.5.5-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19531 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.33_arm64.deb ... Unpacking apt (2.9.33) over (2.9.8) ... Setting up apt (2.9.33) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19526 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.68_all.deb ... Unpacking init-system-helpers (1.68) over (1.67) ... Setting up init-system-helpers (1.68) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19526 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... Unpacking ncurses-base (6.5+20250216-2) over (6.5-2) ... Setting up ncurses-base (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19526 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.14-4_arm64.deb ... Unpacking sysvinit-utils (3.14-4) over (3.10-2) ... Setting up sysvinit-utils (3.14-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19526 files and directories currently installed.) Preparing to unpack .../logsave_1.47.2-1_arm64.deb ... Unpacking logsave (1.47.2-1) over (1.47.1-1) ... Preparing to unpack .../libext2fs2t64_1.47.2-1_arm64.deb ... Leaving 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2 to /lib/aarch64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2.3 to /lib/aarch64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2 to /lib/aarch64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2.4 to /lib/aarch64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:arm64 (1.47.2-1) over (1.47.1-1) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up libext2fs2t64:arm64 (1.47.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19526 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.2-1_arm64.deb ... Unpacking e2fsprogs (1.47.2-1) over (1.47.1-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) over (2.6.3-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_arm64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:arm64 (3.13.2-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.13.2-2_arm64.deb ... Unpacking python3-minimal (3.13.2-2) over (3.12.6-1) ... Preparing to unpack .../python3.12-minimal_3.12.9-1_arm64.deb ... Unpacking python3.12-minimal (3.12.9-1) over (3.12.6-1) ... Preparing to unpack .../libpython3.12-minimal_3.12.9-1_arm64.deb ... find: ‘/usr/lib/python3’: No such file or directory Unpacking libpython3.12-minimal:arm64 (3.12.9-1) over (3.12.6-1) ... Preparing to unpack .../libgpg-error0_1.51-3_arm64.deb ... Unpacking libgpg-error0:arm64 (1.51-3) over (1.50-4) ... Setting up libgpg-error0:arm64 (1.51-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.11.0-7_arm64.deb ... Unpacking libgcrypt20:arm64 (1.11.0-7) over (1.11.0-6) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.46-1+b1_arm64.deb ... Unpacking gpgv (2.2.46-1+b1) over (2.2.43-8+b1) ... Setting up gpgv (2.2.46-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) over (3.4.6-1) ... Setting up libffi8:arm64 (3.4.7-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) over (1.2-1) ... Setting up libunistring5:arm64 (1.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.8-1_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-1) over (2.3.7-2) ... Setting up libidn2-0:arm64 (2.3.8-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) over (0.25.5-2) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) over (4.19.0-3+b2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19848 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.9-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.9-2) over (3.8.6-2) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19848 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2+b1_arm64.deb ... Unpacking libmd0:arm64 (1.1.0-2+b1) over (1.1.0-2) ... Setting up libmd0:arm64 (1.1.0-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.5+20250216-2_arm64.deb ... Unpacking libtinfo6:arm64 (6.5+20250216-2) over (6.5-2) ... Setting up libtinfo6:arm64 (6.5+20250216-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) Preparing to unpack .../usrmerge_39+nmu2_all.deb ... Unpacking usrmerge (39+nmu2) over (39) ... Setting up perl-modules-5.40 (5.40.1-2) ... Setting up libperl5.40:arm64 (5.40.1-2) ... Setting up perl (5.40.1-2) ... Setting up usrmerge (39+nmu2) ... (Reading database ... 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Setting up rpcsvc-proto (1.4.3-1+b1) ... Setting up make (4.4.1-1) ... Setting up libmpfr6:arm64 (4.2.1-1+b2) ... Setting up xz-utils (5.6.4-1) ... Setting up libmpc3:arm64 (1.3.1-1+b3) ... Setting up libatomic1:arm64 (14.2.0-16) ... Setting up patch (2.7.6-7+b1) ... Setting up libss2:arm64 (1.47.2-1) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libdpkg-perl (1.22.18pureos1) ... Setting up logsave (1.47.2-1) ... Setting up libubsan1:arm64 (14.2.0-16) ... Setting up mount (2.40.4-5) ... Setting up cpp-14-aarch64-linux-gnu (14.2.0-16) ... Setting up libhwasan0:arm64 (14.2.0-16) ... Setting up libcrypt-dev:arm64 (1:4.4.38-1) ... Setting up libasan8:arm64 (14.2.0-16) ... Setting up libeatmydata1:arm64 (131-2+b1) ... Setting up python3-minimal (3.13.2-2) ... Setting up mawk (1.3.4.20250131-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libtsan2:arm64 (14.2.0-16) ... Setting up libbinutils:arm64 (2.44-3) ... Setting up libc-dev-bin (2.41-4) ... Setting up openssl (3.4.1-1) ... Setting up libcc1-0:arm64 (14.2.0-16) ... Setting up liblsan0:arm64 (14.2.0-16) ... Setting up libitm1:arm64 (14.2.0-16) ... Setting up util-linux-extra (2.40.4-5) ... Setting up libctf0:arm64 (2.44-3) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up cpp-12 (12.4.0-4) ... Setting up binutils-aarch64-linux-gnu (2.44-3) ... Setting up e2fsprogs (1.47.2-1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt, it does not contain exactly one certificate or CRL 7 added, 1 removed; done. Setting up libgprofng0:arm64 (2.44-3) ... Setting up libgcc-12-dev:arm64 (12.4.0-4) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up cpp-14 (14.2.0-16) ... Setting up libc6-dev:arm64 (2.41-4) ... Setting up libgcc-14-dev:arm64 (14.2.0-16) ... Setting up libstdc++-14-dev:arm64 (14.2.0-16) ... Setting up libstdc++-12-dev:arm64 (12.4.0-4) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up binutils (2.44-3) ... Setting up dpkg-dev (1.22.18pureos1) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3+b1) ... Setting up gcc-12 (12.4.0-4) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up build-essential (12.12) ... Setting up gcc-14-aarch64-linux-gnu (14.2.0-16) ... Setting up g++-12 (12.4.0-4) ... Setting up g++-14-aarch64-linux-gnu (14.2.0-16) ... Setting up gcc-14 (14.2.0-16) ... Setting up libnsl-dev:arm64 (1.3.0-3+b3) ... Setting up g++-14 (14.2.0-16) ... Processing triggers for debianutils (5.21) ... Processing triggers for libc-bin (2.41-4) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... build-essential is already the newest version (12.12). dpkg-dev is already the newest version (1.22.18pureos1). fakeroot is already the newest version (1.37-1). The following packages were automatically installed and are no longer required: libapt-pkg6.0t64 libgnutls30t64 libperl5.38t64 libpython3.12-minimal perl-modules-5.38 python3.12-minimal Use 'apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌───────────────────────────────────────────────┐ │ Installing package build-dependencies │ └───────────────────────────────────────────────┘ Note, using directory './' to get the build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg6.0t64 libperl5.38t64 libpython3.12-minimal perl-modules-5.38 python3.12-minimal Use 'apt autoremove' to remove them. The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libbrotli1 libcereal-dev libcurl4t64 libdebhelper-perl libdivsufsort-dev libdivsufsort3 libelf1t64 libfile-stripnondeterminism-perl libfmt-dev libfmt10 libicu76 libjellyfish-2.0-2 libjellyfish-2.0-dev libjemalloc-dev libjemalloc2 libjsoncpp26 libldap2 libmagic-mgc libmagic1t64 libncursesw6 libnghttp2-14 libnghttp3-9 libpipeline1 libpkgconf3 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-stdlib libreadline8t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsimde-dev libsparsehash-dev libspdlog-dev libspdlog1.15 libsqlite3-0 libssh2-1t64 libtclap-dev libtool libuchardet0 libuv1t64 libxml2 m4 man-db media-types netbase pkg-config pkgconf pkgconf-bin po-debconf procps python3 python3-importlib-metadata python3-markdown python3-zipp python3.13 rapidjson-dev readline-common sensible-utils zlib1g-dev 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 15.4 MB/45.7 MB of archives. After this operation, 187 MB of additional disk space will be used. Get:1 https://repo.pureos.net/pureos landing/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get:2 https://repo.pureos.net/pureos landing/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get:3 https://repo.pureos.net/pureos landing/main all cmake-data all 3.31.6-1 [2268 kB] Get:4 https://repo.pureos.net/pureos landing/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get:5 https://repo.pureos.net/pureos landing/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get:6 https://repo.pureos.net/pureos landing/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get:7 https://repo.pureos.net/pureos landing/main arm64 cmake arm64 3.31.6-1 [9912 kB] Get:8 https://repo.pureos.net/pureos landing/main arm64 libdivsufsort3 arm64 2.0.1-6+b1 [39.9 kB] Get:9 https://repo.pureos.net/pureos landing/main arm64 libdivsufsort-dev arm64 2.0.1-6+b1 [19.1 kB] Get:10 https://repo.pureos.net/pureos landing/main arm64 libfmt10 arm64 10.1.1+ds1-4 [121 kB] Get:11 https://repo.pureos.net/pureos landing/main arm64 libfmt-dev arm64 10.1.1+ds1-4 [177 kB] Get:12 https://repo.pureos.net/pureos landing/main arm64 libjellyfish-2.0-2 arm64 2.3.1-4+b1 [61.9 kB] Get:13 https://repo.pureos.net/pureos landing/main arm64 libjellyfish-2.0-dev arm64 2.3.1-4+b1 [136 kB] Get:14 https://repo.pureos.net/pureos landing/main arm64 libjemalloc2 arm64 5.3.0-3 [216 kB] Get:15 https://repo.pureos.net/pureos landing/main arm64 libjemalloc-dev arm64 5.3.0-3 [356 kB] Get:16 https://repo.pureos.net/pureos landing/main all libsimde-dev all 0.8.2-3 [467 kB] Get:17 https://repo.pureos.net/pureos landing/main arm64 libspdlog1.15 arm64 1:1.15.1+ds-1 [99.0 kB] Get:18 https://repo.pureos.net/pureos landing/main arm64 libspdlog-dev arm64 1:1.15.1+ds-1 [90.8 kB] Get:19 https://repo.pureos.net/pureos landing/main all python3-zipp all 3.21.0-1 [10.6 kB] Get:20 https://repo.pureos.net/pureos landing/main all python3-importlib-metadata all 8.6.1-1 [21.4 kB] Get:21 https://repo.pureos.net/pureos landing/main all python3-markdown all 3.7-2 [85.2 kB] Fetched 15.4 MB in 4s (4268 kB/s) Extracting templates from packages: 37% Extracting templates from packages: 75% Extracting templates from packages: 100% Preconfiguring packages ... Selecting previously unselected package media-types. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19909 files and directories currently installed.) Preparing to unpack .../00-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../01-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libncursesw6:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../05-libsqlite3-0_3.46.1-2_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.46.1-2) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../06-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... 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Processing triggers for libc-bin (2.41-4) ... ┌───────────────┐ │ Build │ └───────────────┘ dpkg-buildpackage: info: source package rapmap dpkg-buildpackage: info: source version 0.15.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: host architecture arm64  dpkg-source --before-build .  debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/srv/build/rapmap-0.15.0+dfsg' dh_clean README.html sample_data/sample_quasi_index/ sample_data/sample_quasi_index_ph/ sample_data/sample_quasi_map.sam sample_data/sample_quasi_map_ph.sam make[1]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg'  debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/srv/build/rapmap-0.15.0+dfsg' dh_auto_configure -- -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier.  CC: gcc CC version:  -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done version: 0.6.0 -- DISABLING NATIVE ARCH. -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE Making Default build type -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found Cereal: /usr/include (Required is at least version "1.2.2") -- Cereal found (include: /usr/include) -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Found Jemalloc: /usr/lib/aarch64-linux-gnu/libjemalloc.so (found version "5.3.0-0-g54eaed1d8b56b1aa528be3bdd1877e59c56fa90c") Found Jemalloc library --- using this memory allocator CPACK_SOURCE_IGNORE_FILES = .git/ CMAKE_SYSTEM_PROCESSOR: aarch64 -- Configuring done (5.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED JELLYFISH_ROOT  -- Build files have been written to: /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/srv/build/rapmap-0.15.0+dfsg' dh_auto_build cd obj-aarch64-linux-gnu && make -j32 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/srv/build/rapmap-0.15.0+dfsg -B/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/depend make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/depend make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/rapmap-0.15.0+dfsg /srv/build/rapmap-0.15.0+dfsg/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp_basic.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/rapmap-0.15.0+dfsg /srv/build/rapmap-0.15.0+dfsg/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp_sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/build make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/build make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 30%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o [ 30%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o [ 30%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o [ 30%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o [ 30%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o [ 30%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o [ 30%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o [ 30%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o [ 34%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o [ 38%] Building CXX object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extf2_sse.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd2_sse.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extz.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extz2_sse.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg2.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg2_sse.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target ksw2pp_basic make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target ksw2pp_sse2 make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/depend make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/rapmap-0.15.0+dfsg /srv/build/rapmap-0.15.0+dfsg/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/build make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 42%] Linking CXX static library libksw2pp.a cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/ksw2pp.dir/cmake_clean_target.cmake cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksw2pp.dir/link.txt --verbose=1 /usr/bin/ar qc libksw2pp.a CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o /usr/bin/ranlib libksw2pp.a make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target ksw2pp make -f src/CMakeFiles/rapmap.dir/build.make src/CMakeFiles/rapmap.dir/depend make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/rapmap-0.15.0+dfsg /srv/build/rapmap-0.15.0+dfsg/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/rapmap.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/rapmap.dir/build.make src/CMakeFiles/rapmap.dir/build make[4]: Entering directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 61%] Building CXX object src/CMakeFiles/rapmap.dir/RapMap.cpp.o [ 61%] 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-I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp [ 92%] Building C object src/CMakeFiles/rapmap.dir/bit_array.c.o [ 92%] Building CXX object src/CMakeFiles/rapmap.dir/edlib.cpp.o [ 96%] Building CXX object src/CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMap.cpp.o -MF CMakeFiles/rapmap.dir/RapMap.cpp.o.d -o CMakeFiles/rapmap.dir/RapMap.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMap.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapUtils.cpp.o -MF CMakeFiles/rapmap.dir/RapMapUtils.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapUtils.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMapUtils.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o -MF CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMapFileSystem.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndex.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/HitManager.cpp.o -MF CMakeFiles/rapmap.dir/HitManager.cpp.o.d -o CMakeFiles/rapmap.dir/HitManager.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/HitManager.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/FastxParser.cpp.o -MF CMakeFiles/rapmap.dir/FastxParser.cpp.o.d -o CMakeFiles/rapmap.dir/FastxParser.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/FastxParser.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/rank9b.cpp.o -MF CMakeFiles/rapmap.dir/rank9b.cpp.o.d -o CMakeFiles/rapmap.dir/rank9b.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/rank9b.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/stringpiece.cc.o -MF CMakeFiles/rapmap.dir/stringpiece.cc.o.d -o CMakeFiles/rapmap.dir/stringpiece.cc.o -c /srv/build/rapmap-0.15.0+dfsg/src/stringpiece.cc cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/rapmap.dir/xxhash.c.o -MF CMakeFiles/rapmap.dir/xxhash.c.o.d -o CMakeFiles/rapmap.dir/xxhash.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/xxhash.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/rapmap.dir/bit_array.c.o -MF CMakeFiles/rapmap.dir/bit_array.c.o.d -o CMakeFiles/rapmap.dir/bit_array.c.o -c /srv/build/rapmap-0.15.0+dfsg/src/bit_array.c cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/edlib.cpp.o -MF CMakeFiles/rapmap.dir/edlib.cpp.o.d -o CMakeFiles/rapmap.dir/edlib.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/edlib.cpp cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/srv/build/rapmap-0.15.0+dfsg/include -I/srv/build/rapmap-0.15.0+dfsg/digestpp -I/srv/build/rapmap-0.15.0+dfsg/external -I/srv/build/rapmap-0.15.0+dfsg/external/cereal/include -I/srv/build/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -MF CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o.d -o CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -c /srv/build/rapmap-0.15.0+dfsg/src/metro/metrohash64.cpp In file included from /srv/build/rapmap-0.15.0+dfsg/include/FastxParser.hpp:17, from /srv/build/rapmap-0.15.0+dfsg/src/FastxParser.cpp:1: /srv/build/rapmap-0.15.0+dfsg/include/concurrentqueue.h: In instantiation of ‘void moodycamel::details::swap_relaxed(std::atomic<_ITp>&, std::atomic<_ITp>&) [with T = std::thread::id]’: /srv/build/rapmap-0.15.0+dfsg/include/concurrentqueue.h:3228:26: required from ‘void moodycamel::ConcurrentQueue::ImplicitProducerKVP::swap(moodycamel::ConcurrentQueue::ImplicitProducerKVP&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]’ 3228 | details::swap_relaxed(key, other.key); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/concurrentqueue.h:3221:4: required from ‘moodycamel::ConcurrentQueue::ImplicitProducerKVP& moodycamel::ConcurrentQueue::ImplicitProducerKVP::operator=(moodycamel::ConcurrentQueue::ImplicitProducerKVP&&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]’ 3221 | swap(other); | ^~~~ /usr/include/c++/14/bits/move.h:235:11: required from ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP; _Require<__not_<__is_tuple_like<_Tp> >, is_move_constructible<_Tp>, is_move_assignable<_Tp> > = void]’ 235 | __a = _GLIBCXX_MOVE(__b); | ^ /usr/include/c++/14/bits/stl_algobase.h:185:11: required from ‘void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*; _ForwardIterator2 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*]’ 185 | swap(*__a, *__b); | ~~~~^~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:215:16: required from ‘_ForwardIterator2 std::swap_ranges(_ForwardIterator1, _ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*; _ForwardIterator2 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*]’ 215 | std::iter_swap(__first1, __first2); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/array:127:25: required from ‘void std::array<_Tp, _Nm>::swap(std::array<_Tp, _Nm>&) [with _Tp = moodycamel::ConcurrentQueue, std::default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP; long unsigned int _Nm = 32]’ 127 | { std::swap_ranges(begin(), end(), __other.begin()); } | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/concurrentqueue.h:3264:42: required from ‘void moodycamel::ConcurrentQueue::swap_implicit_producer_hashes(moodycamel::ConcurrentQueue&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]’ 3264 | initialImplicitProducerHashEntries.swap(other.initialImplicitProducerHashEntries); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/concurrentqueue.h:892:3: required from ‘moodycamel::ConcurrentQueue& moodycamel::ConcurrentQueue::swap_internal(moodycamel::ConcurrentQueue&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]’ 892 | swap_implicit_producer_hashes(other); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/concurrentqueue.h:863:10: required from ‘moodycamel::ConcurrentQueue& moodycamel::ConcurrentQueue::operator=(moodycamel::ConcurrentQueue&&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]’ 863 | return swap_internal(other); | ^~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/FastxParser.cpp:46:14: required from ‘fastx_parser::FastxParser::FastxParser(std::vector >, std::vector >, uint32_t, uint32_t, uint32_t) [with T = fastx_parser::ReadSeq; uint32_t = unsigned int]’ 46 | readQueue_ = moodycamel::ConcurrentQueue>>( | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 |  4 * numConsumers, numParsers, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/FastxParser.cpp:405:16: required from here 405 | template class FastxParser; | ^~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/concurrentqueue.h:446:19: warning: moving a temporary object prevents copy elision []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-pessimizing-move-Wpessimizing-move]8;;] 446 | T temp = std::move(left.load(std::memory_order_relaxed)); | ^~~~ /srv/build/rapmap-0.15.0+dfsg/include/concurrentqueue.h:446:19: note: remove ‘std::move’ call /srv/build/rapmap-0.15.0+dfsg/include/concurrentqueue.h:447:27: warning: moving a temporary object prevents copy elision []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-pessimizing-move-Wpessimizing-move]8;;] 447 | left.store(std::move(right.load(std::memory_order_relaxed)), std::memory_order_relaxed); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/concurrentqueue.h:447:27: note: remove ‘std::move’ call In file included from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /srv/build/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /srv/build/rapmap-0.15.0+dfsg/include/HitManager.hpp:25, from /srv/build/rapmap-0.15.0+dfsg/src/HitManager.cpp:22: /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 197 | registry_t() {} | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the ‘< >’ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 198 | registry_t(const registry_t&) = delete; | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the ‘< >’ In file included from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /srv/build/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /srv/build/rapmap-0.15.0+dfsg/src/RapMapUtils.cpp:26: /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 197 | registry_t() {} | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the ‘< >’ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 198 | registry_t(const registry_t&) = delete; | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the ‘< >’ In file included from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /srv/build/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /srv/build/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:5, from /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndex.cpp:23: /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 197 | registry_t() {} | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the ‘< >’ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 198 | registry_t(const registry_t&) = delete; | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the ‘< >’ In file included from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /srv/build/rapmap-0.15.0+dfsg/include/IndexHeader.hpp:25, from /srv/build/rapmap-0.15.0+dfsg/src/RapMap.cpp:30: /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 197 | registry_t() {} | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the ‘< >’ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 198 | registry_t(const registry_t&) = delete; | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the ‘< >’ In file included from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /srv/build/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /srv/build/rapmap-0.15.0+dfsg/include/HitManager.hpp:25, from /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:50: /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 197 | registry_t() {} | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the ‘< >’ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 198 | registry_t(const registry_t&) = delete; | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the ‘< >’ In file included from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /srv/build/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /srv/build/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:50: /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 197 | registry_t() {} | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the ‘< >’ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wno-template-id-cdtor-Wtemplate-id-cdtor]8;;] 198 | registry_t(const registry_t&) = delete; | ^ /srv/build/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the ‘< >’ In file included from /srv/build/rapmap-0.15.0+dfsg/include/zstr/zstr.hpp:16, from /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:62: /srv/build/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp: In static member function ‘static void strict_fstream::detail::static_method_holder::check_peek(std::istream*, const std::string&, std::ios_base::openmode)’: /srv/build/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp:128:39: warning: catching polymorphic type ‘class std::ios_base::failure’ by value []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/C_002b_002b-Dialect-Options.html#index-Wcatch-value-Wcatch-value=]8;;] 128 | catch (std::ios_base::failure e) {} | ^ In file included from /srv/build/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:29: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair > >; Alloc = spp::libc_allocator > > >; value_type = std::pair > >; reference = std::pair > >&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]’ 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; pointer = std::pair > >*; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair > >; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map > >::DefaultValue; KT = long unsigned int&; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; value_type = std::pair > >]’ 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from ‘spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector >; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; mapped_type = std::vector >]’ 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:652:33: required from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ 652 | duplicateNames[dupInfo.txId].push_back(processedName); | ~~~~~~~~~~~~~~^ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 |  usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting ‘spp::sparsegroup > >, spp::libc_allocator > > > >::value_type’ {aka ‘std::pair > >’} to ‘spp::sparsegroup > >, spp::libc_allocator > > > >::mutable_reference’ {aka ‘std::pair > >&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = std::vector >]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair > >; Alloc = spp::libc_allocator > > >; mutable_value_type = std::pair > >; reference = std::pair > >&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1407:22: required from ‘void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; allocator_type = spp::libc_allocator > > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant]’ 1407 | _init_val((mutable_pointer)&_group[num_items], val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]’ 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; pointer = std::pair > >*; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair > >; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map > >::DefaultValue; KT = long unsigned int&; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; value_type = std::pair > >]’ 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from ‘spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector >; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; mapped_type = std::vector >]’ 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:652:33: required from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ 652 | duplicateNames[dupInfo.txId].push_back(processedName); | ~~~~~~~~~~~~~~^ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 |  usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting ‘spp::sparsegroup > >, spp::libc_allocator > > > >::value_type’ {aka ‘std::pair > >’} to ‘spp::sparsegroup > >, spp::libc_allocator > > > >::mutable_reference’ {aka ‘std::pair > >&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = std::vector >]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; value_type = std::pair >; reference = std::pair >&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]’ 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]’ 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from ‘spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]’ 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from ‘bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]’ 319 | khash[bits] = {start, stop}; | ~~~~~^ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:842:34: required from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ 842 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 |  usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting ‘spp::sparsegroup >, spp::libc_allocator > > >::value_type’ {aka ‘std::pair >’} to ‘spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference’ {aka ‘std::pair >&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; value_type = std::pair >; reference = std::pair >&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]’ 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]’ 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from ‘spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]’ 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from ‘bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]’ 319 | khash[bits] = {start, stop}; | ~~~~~^ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:863:34: required from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ 863 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 |  usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting ‘spp::sparsegroup >, spp::libc_allocator > > >::value_type’ {aka ‘std::pair >’} to ‘spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference’ {aka ‘std::pair >&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = long int; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]’ 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from ‘spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long int; Key = long int; T = long int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = long int]’ 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from ‘void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]’ 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from ‘bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]’ 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:839:41: required from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ 839 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 |  numHashThreads); | ~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 |  usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting ‘spp::sparsegroup, spp::libc_allocator > >::value_type’ {aka ‘std::pair’} to ‘spp::sparsegroup, spp::libc_allocator > >::mutable_reference’ {aka ‘std::pair&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; mutable_value_type = std::pair >; reference = std::pair >&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1407:22: required from ‘void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant]’ 1407 | _init_val((mutable_pointer)&_group[num_items], val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]’ 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]’ 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from ‘spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]’ 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from ‘bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]’ 319 | khash[bits] = {start, stop}; | ~~~~~^ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:842:34: required from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ 842 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 |  usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting ‘spp::sparsegroup >, spp::libc_allocator > > >::value_type’ {aka ‘std::pair >’} to ‘spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference’ {aka ‘std::pair >&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = int; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]’ 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from ‘spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = int; Key = int; T = int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = int]’ 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from ‘void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]’ 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from ‘bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]’ 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:860:41: required from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ 860 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 |  numHashThreads); | ~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 |  usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting ‘spp::sparsegroup, spp::libc_allocator > >::value_type’ {aka ‘std::pair’} to ‘spp::sparsegroup, spp::libc_allocator > >::mutable_reference’ {aka ‘std::pair&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; mutable_value_type = std::pair >; reference = std::pair >&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1407:22: required from ‘void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant]’ 1407 | _init_val((mutable_pointer)&_group[num_items], val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]’ 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]’ 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from ‘spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]’ 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from ‘bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]’ 319 | khash[bits] = {start, stop}; | ~~~~~^ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:863:34: required from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ 863 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 |  usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting ‘spp::sparsegroup >, spp::libc_allocator > > >::value_type’ {aka ‘std::pair >’} to ‘spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference’ {aka ‘std::pair >&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from ‘void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]’ 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = long int; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]’ 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from ‘spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long int; Key = long int; T = long int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = long int]’ 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from ‘void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]’ 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from ‘bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]’ 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:839:41: required from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ 839 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 |  numHashThreads); | ~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 |  usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting ‘spp::sparsegroup, spp::libc_allocator > >::value_type’ {aka ‘std::pair’} to ‘spp::sparsegroup, spp::libc_allocator > >::mutable_reference’ {aka ‘std::pair&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /srv/build/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:29: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /srv/build/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from ‘FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator > >, rapmap::utils::SAInterval >]’ 162 | l = overflow_[ind]; | ~~~~~~~~~^ /srv/build/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from ‘bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = long int]’ 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from ‘void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]’ 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 |  saSearcher, | ~~~~~~~~~~~ 474 |  leftHCInfo); | ~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from ‘bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]’ 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 |  parser, | ~~~~~~~ 767 |  std::ref(rmi), | ~~~~~~~~~~~~~~ 768 |  &iomutex, | ~~~~~~~~~ 769 |  outQueue, | ~~~~~~~~~ 770 |  std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 |  mopts); | ~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from ‘bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]’ 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 |  outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1217:29: required from here 1217 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting ‘spp::sparsegroup, spp::libc_allocator > >::value_type’ {aka ‘std::pair’} to ‘spp::sparsegroup, spp::libc_allocator > >::mutable_reference’ {aka ‘std::pair&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /srv/build/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from ‘FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator >, rapmap::utils::SAInterval >]’ 162 | l = overflow_[ind]; | ~~~~~~~~~^ /srv/build/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from ‘bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = int]’ 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from ‘void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]’ 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 |  saSearcher, | ~~~~~~~~~~~ 474 |  leftHCInfo); | ~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from ‘bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]’ 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 |  parser, | ~~~~~~~ 767 |  std::ref(rmi), | ~~~~~~~~~~~~~~ 768 |  &iomutex, | ~~~~~~~~~ 769 |  outQueue, | ~~~~~~~~~ 770 |  std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 |  mopts); | ~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from ‘bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]’ 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 |  outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1232:31: required from here 1232 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting ‘spp::sparsegroup, spp::libc_allocator > >::value_type’ {aka ‘std::pair’} to ‘spp::sparsegroup, spp::libc_allocator > >::mutable_reference’ {aka ‘std::pair&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from ‘void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]’ 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = int; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]’ 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from ‘spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = int; Key = int; T = int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = int]’ 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from ‘void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]’ 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from ‘bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]’ 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:860:41: required from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]’ 860 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 |  numHashThreads); | ~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 |  usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting ‘spp::sparsegroup, spp::libc_allocator > >::value_type’ {aka ‘std::pair’} to ‘spp::sparsegroup, spp::libc_allocator > >::mutable_reference’ {aka ‘std::pair&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from ‘void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]’ 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /srv/build/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from ‘FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator > >, rapmap::utils::SAInterval >]’ 162 | l = overflow_[ind]; | ~~~~~~~~~^ /srv/build/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from ‘bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = long int]’ 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from ‘void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]’ 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 |  saSearcher, | ~~~~~~~~~~~ 474 |  leftHCInfo); | ~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from ‘bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]’ 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 |  parser, | ~~~~~~~ 767 |  std::ref(rmi), | ~~~~~~~~~~~~~~ 768 |  &iomutex, | ~~~~~~~~~ 769 |  outQueue, | ~~~~~~~~~ 770 |  std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 |  mopts); | ~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from ‘bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]’ 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 |  outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1217:29: required from here 1217 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting ‘spp::sparsegroup, spp::libc_allocator > >::value_type’ {aka ‘std::pair’} to ‘spp::sparsegroup, spp::libc_allocator > >::mutable_reference’ {aka ‘std::pair&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of ‘void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]’: /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from ‘void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]’ 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from ‘void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from ‘spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]’ 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from ‘spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from ‘spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]’ 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /srv/build/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from ‘FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator >, rapmap::utils::SAInterval >]’ 162 | l = overflow_[ind]; | ~~~~~~~~~^ /srv/build/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from ‘bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = int]’ 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from ‘void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]’ 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 |  saSearcher, | ~~~~~~~~~~~ 474 |  leftHCInfo); | ~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from ‘bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]’ 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 |  parser, | ~~~~~~~ 767 |  std::ref(rmi), | ~~~~~~~~~~~~~~ 768 |  &iomutex, | ~~~~~~~~~ 769 |  outQueue, | ~~~~~~~~~ 770 |  std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 |  mopts); | ~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from ‘bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]’ 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 |  outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1232:31: required from here 1232 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting ‘spp::sparsegroup, spp::libc_allocator > >::value_type’ {aka ‘std::pair’} to ‘spp::sparsegroup, spp::libc_allocator > >::mutable_reference’ {aka ‘std::pair&’} does not use ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wcast-user-defined-Wcast-user-defined]8;;] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ cc1plus: note: unrecognized command-line option ‘-Wno-unused-local-typedef’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-unused-local-typedef’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-unused-local-typedef’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-unused-local-typedef’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-unused-local-typedef’ may have been intended to silence earlier diagnostics In file included from /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/sha2.hpp:9, from /srv/build/rapmap-0.15.0+dfsg/include/digestpp/digestpp.hpp:6, from /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:73: In member function ‘void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = long unsigned int; long unsigned int O = 0]’, inlined from ‘digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from ‘void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from ‘void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = long unsigned int; long unsigned int O = 0]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from ‘digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]’ at /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’ at /srv/build/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:581:30: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript ‘const long unsigned int[0]’ is partly outside array bounds of ‘unsigned char [1]’ []8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds=]8;;] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /srv/build/rapmap-0.15.0+dfsg/include/digestpp/digestpp.hpp:5: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function ‘void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]’: /srv/build/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: object ‘byte’ of size 1 169 | unsigned char byte = *begin++; | ^~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unused-local-typedef’ may have been intended to silence earlier diagnostics At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unused-local-typedef’ may have been intended to silence earlier diagnostics [100%] Linking CXX executable rapmap cd /srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/rapmap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/srv/build/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rapmap.dir/link.d CMakeFiles/rapmap.dir/RapMap.cpp.o CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o CMakeFiles/rapmap.dir/RapMapUtils.cpp.o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o CMakeFiles/rapmap.dir/HitManager.cpp.o CMakeFiles/rapmap.dir/FastxParser.cpp.o CMakeFiles/rapmap.dir/rank9b.cpp.o CMakeFiles/rapmap.dir/stringpiece.cc.o CMakeFiles/rapmap.dir/xxhash.c.o CMakeFiles/rapmap.dir/bit_array.c.o CMakeFiles/rapmap.dir/edlib.cpp.o CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -o rapmap -L/srv/build/rapmap-0.15.0+dfsg/lib -L/srv/build/rapmap-0.15.0+dfsg/external/install/lib -Wl,-rpath,"\$ORIGIN/../lib:\$ORIGIN/../../lib:\$ORIGIN/:\$ORIGIN/../../external/install/lib" /usr/lib/aarch64-linux-gnu/libz.so -ldivsufsort -ldivsufsort64 -lm -lz /usr/lib/aarch64-linux-gnu/libjemalloc.so -lrt libksw2pp.a -ldl /usr/bin/ld: libksw2pp.a(KSW2Aligner.cpp.o): in function `ksw2pp::KSW2Aligner::operator()(unsigned char const*, int, unsigned char const*, int, ksw_extz_t*, ksw2pp::EnumToType<(ksw2pp::KSW2AlignmentType)2>)': ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:362:(.text+0x4dc): undefined reference to `ksw_extz2_sse2' /usr/bin/ld: ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:358:(.text+0x510): undefined reference to `ksw_extz2_sse41' /usr/bin/ld: libksw2pp.a(KSW2Aligner.cpp.o): in function `ksw2pp::KSW2Aligner::operator()(char const*, int, char const*, int, ksw_extz_t*, ksw2pp::EnumToType<(ksw2pp::KSW2AlignmentType)2>)': ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:227:(.text+0x1088): undefined reference to `ksw_extz2_sse2' /usr/bin/ld: ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:223:(.text+0x10cc): undefined reference to `ksw_extz2_sse41' collect2: error: ld returned 1 exit status make[4]: *** [src/CMakeFiles/rapmap.dir/build.make:315: src/rapmap] Error 1 make[4]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:151: src/CMakeFiles/rapmap.dir/all] Error 2 make[3]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[2]: *** [Makefile:169: all] Error 2 make[2]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j32 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:23: override_dh_auto_build] Error 2 make[1]: Leaving directory '/srv/build/rapmap-0.15.0+dfsg' make: *** [debian/rules:17: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 Command `dpkg-buildpackage --changes-option=-DDistribution=landing -B -mDebian Med Packaging Team -eDebian Med Packaging Team ` failed. Command debspawn build --no-buildlog --arch=arm64 --results-dir=/var/lib/lkspark/workspaces/9ad30791-929f-4b19-bf86-a54a84448b93 --only=arch --maintainer=Debian Med Packaging Team landing rapmap_0.15.0+dfsg-4.dsc failed with error code 2