debspawn 0.6.5 on fennel at 2024-10-16 13:32:52 UTC-0700 gpgv: Signature made Fri 16 Aug 2024 07:42:40 AM PDT gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for /var/lib/lkspark/workspaces/b3e442c6-20b7-441c-b459-99d54d2bcce4/r-bioc-ucsc.utils_1.0.0+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-ucsc.utils in r-bioc-ucsc.utils-1.0.0+ds dpkg-source: info: unpacking r-bioc-ucsc.utils_1.0.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-ucsc.utils_1.0.0+ds-2.debian.tar.xz ╔═══════════════════════╗ ║ Package build ║ ╚═══════════════════════╝ Package: r-bioc-ucsc.utils Version: 1.0.0+ds-2 Distribution: landing Architecture: amd64 Free space in workspace: 66.1GiB ┌───────────────────────────────────────┐ │ Preparing container for build │ └───────────────────────────────────────┘ Get:1 https://repo.pureos.net/pureos landing InRelease [9625 B] Get:2 https://repo.pureos.net/pureos landing/main amd64 Packages [4390 kB] Get:3 https://repo.pureos.net/pureos landing/main all Packages [3880 kB] Fetched 8279 kB in 1s (5913 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gpgv 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/218 kB of archives. After this operation, 1024 B disk space will be freed. debconf: delaying package configuration, since apt-utils is not installed (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13780 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.44-1_amd64.deb ... Unpacking gpgv (2.2.44-1) over (2.2.43-8+b1) ... Setting up gpgv (2.2.44-1) ... Reading package lists... Building dependency tree... Reading state information... build-essential is already the newest version (12.10). dpkg-dev is already the newest version (1.21.22pureos1). fakeroot is already the newest version (1.36-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌───────────────────────────────────────────────┐ │ Installing package build-dependencies │ └───────────────────────────────────────────────┘ Note, using directory './' to get the build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext gettext-base gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3t64-gnutls libcurl4t64 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdynaloader-functions-perl libelf1t64 libencode-locale-perl libeval-closure-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-14-dev libgfortran5 libglib2.0-0t64 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.5-0 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1t64 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6t64 m4 man-db pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-s4vectors r-cran-askpass r-cran-curl r-cran-httr r-cran-jsonlite r-cran-mime r-cran-openssl r-cran-r6 r-cran-sys readline-common sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 191 newly installed, 0 to remove and 0 not upgraded. Need to get 929 kB/106 MB of archives. After this operation, 322 MB of additional disk space will be used. Get:1 https://repo.pureos.net/pureos landing/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Get:2 https://repo.pureos.net/pureos landing/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Get:3 https://repo.pureos.net/pureos landing/main amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [401 kB] Get:4 https://repo.pureos.net/pureos landing/main all r-cran-httr all 1.4.7+dfsg-1 [459 kB] Fetched 929 kB in 0s (6663 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13779 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../085-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../086-libjbig0_2.1-6.1+b1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../093-libxft2_2.3.6-1+b1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../094-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../095-libxss1_1%3a1.2.3-1+b1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../096-libtk8.6_8.6.15-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.15-1) ... Selecting previously unselected package libice6:amd64. 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Setting up libglib2.0-0t64:amd64 (2.82.1-1) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpkgconf3:amd64 (1.8.1-3) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libncurses6:amd64 (6.5-2) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:amd64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... 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Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.1-3) ... Creating config file /etc/R/Renviron with new version Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b3) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-curl (5.2.3+dfsg-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-base-dev (4.4.1-3) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-mime (0.12-2) ... Setting up libmoose-perl:amd64 (2.2207-1+b1) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... Setting up r-bioc-s4vectors (0.42.1+dfsg-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-openssl (2.2.0+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-3) ... ┌───────────────┐ │ Build │ └───────────────┘ dpkg-buildpackage: info: source package r-bioc-ucsc.utils dpkg-buildpackage: info: source version 1.0.0+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: host architecture amd64  dpkg-source --before-build .  debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R  debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-ucsc.utils/ -O--buildsystem=R I: R Package: UCSC.utils Version: 1.0.0 I: Building using R version 4.4.1-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 16 Aug 2024 16:42:14 +0200 mkdir -p /srv/build/r-bioc-ucsc.utils-1.0.0\+ds/debian/r-bioc-ucsc.utils/usr/lib/R/site-library R CMD INSTALL -l /srv/build/r-bioc-ucsc.utils-1.0.0\+ds/debian/r-bioc-ucsc.utils/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 16 Aug 2024 16:42:14 +0200'" * installing *source* package ‘UCSC.utils’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCSC.utils) I: Using r-cran-dbi for Suggests:DBI I: Using r-cran-rmariadb for Suggests:RMariaDB I: Using r-bioc-genomeinfodb for Suggests:GenomeInfoDb I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-httr for Imports:httr I: Using r-cran-jsonlite for Imports:jsonlite I: Using r-bioc-s4vectors for Imports:S4Vectors I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-ucsc.utils as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-ucsc.utils' in '../r-bioc-ucsc.utils_1.0.0+ds-2_all.deb'.  dpkg-genbuildinfo --build=binary -O../r-bioc-ucsc.utils_1.0.0+ds-2_amd64.buildinfo  dpkg-genchanges -DDistribution=landing --build=binary -mDebian R Packages Maintainers -eDebian R Packages Maintainers -O../r-bioc-ucsc.utils_1.0.0+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included)  dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) This build required 270.6KiB of dedicated disk space. ┌────────────────────────────────────┐ │ Retrieving build artifacts │ └────────────────────────────────────┘ Copied 4 files. Done.