debspawn 0.6.5 on estragon at 2024-07-07 23:50:05 UTC-0400 dpkg-source: info: extracting openstructure in openstructure-2.5.0 dpkg-source: info: unpacking openstructure_2.5.0.orig.tar.xz dpkg-source: info: unpacking openstructure_2.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python-dist-packages.patch dpkg-source: info: applying fix-quotes-in-ENV.patch dpkg-source: info: applying skip-network-tests.patch dpkg-source: info: applying add-python3-shebangs.patch dpkg-source: info: applying ost_config.patch dpkg-source: info: applying skip-dssp-tests.patch dpkg-source: info: applying 15a499485ede152b6d432b7c91f1084e9e11bd8f.patch ╔═══════════════════════╗ ║ Package build ║ ╚═══════════════════════╝ Package: openstructure Version: 2.5.0-3 Distribution: landing Architecture: arm64 Free space in workspace: 178.2GiB ┌───────────────────────────────────────┐ │ Preparing container for build │ └───────────────────────────────────────┘ Get:1 https://repo.pureos.net/pureos landing InRelease [9625 B] Get:2 https://repo.pureos.net/pureos landing/main arm64 Packages [4260 kB] Get:3 https://repo.pureos.net/pureos landing/main all Packages [3797 kB] Fetched 8066 kB in 7s (1211 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: libapt-pkg6.0 libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libgnutls30 libhogweed6 libnettle8 libssl3 libtirpc3 The following NEW packages will be installed: cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-13 gcc-13-aarch64-linux-gnu gcc-13-base gcc-14-base gcc-aarch64-linux-gnu libapt-pkg6.0t64 libbsd0 libdb5.3t64 libext2fs2t64 libgcc-13-dev libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libperl5.38t64 libsframe1 libssl3t64 libstdc++-13-dev libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: adduser apt base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential bzip2 ca-certificates coreutils cpp cpp-12 dash debconf debian-archive-keyring debianutils diffutils e2fsprogs eatmydata fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpgv grep gzip hostname init-system-helpers libacl1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libeatmydata1 libexpat1 libfakeroot libffi8 libgcc-12-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libisl23 libitm1 libjansson4 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpython3.11-minimal libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libss2 libstdc++-12-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login logsave mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base python3-minimal python3.11-minimal sed sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 134 upgraded, 28 newly installed, 10 to remove and 0 not upgraded. Need to get 3117 kB/143 MB of archives. After this operation, 238 MB of additional disk space will be used. Get:1 https://repo.pureos.net/pureos landing/main all linux-libc-dev all 6.9.7-1 [2338 kB] Get:2 https://repo.pureos.net/pureos landing/main arm64 debianutils arm64 5.20 [89.5 kB] Get:3 https://repo.pureos.net/pureos landing/main arm64 libnettle8t64 arm64 3.10-1 [308 kB] Get:4 https://repo.pureos.net/pureos landing/main arm64 libhogweed6t64 arm64 3.10-1 [331 kB] Get:5 https://repo.pureos.net/pureos landing/main arm64 base-passwd arm64 3.6.4 [50.4 kB] Fetched 3117 kB in 3s (996 kB/s) debconf: delaying package configuration, since apt-utils is not installed (Reading database ... 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Setting up zlib1g:arm64 (1:1.3.dfsg+really1.3.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13154 files and directories currently installed.) Preparing to unpack .../python3.11-minimal_3.11.9-1_arm64.deb ... Unpacking python3.11-minimal (3.11.9-1) over (3.11.2-6) ... Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... find: ‘/usr/lib/python3’: No such file or directory Unpacking libpython3.11-minimal:arm64 (3.11.9-1) over (3.11.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13154 files and directories currently installed.) Removing libssl3:arm64 (3.0.11-1~deb12u2) ... (Reading database ... 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Setting up libpam-modules-bin (1.5.3-7) ... dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested: libperl5.36:arm64 depends on libdb5.3. libpam-modules:arm64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16285 files and directories currently installed.) Removing libdb5.3:arm64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libdb5.3t64:arm64. (Reading database ... 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Installing new version of config file /etc/security/namespace.init ... dpkg: libgdbm-compat4:arm64: dependency problems, but removing anyway as you requested: libperl5.36:arm64 depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16285 files and directories currently installed.) Removing libgdbm-compat4:arm64 (1.23-3) ... dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested: libperl5.36:arm64 depends on libgdbm6 (>= 1.21). Removing libgdbm6:arm64 (1.23-3) ... Selecting previously unselected package libgdbm6t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16273 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.23-6_arm64.deb ... Unpacking libgdbm6t64:arm64 (1.23-6) ... Selecting previously unselected package libgdbm-compat4t64:arm64. Preparing to unpack .../libgdbm-compat4t64_1.23-6_arm64.deb ... Unpacking libgdbm-compat4t64:arm64 (1.23-6) ... Selecting previously unselected package libperl5.38t64:arm64. Preparing to unpack .../libperl5.38t64_5.38.2-5_arm64.deb ... Unpacking libperl5.38t64:arm64 (5.38.2-5) ... Preparing to unpack .../perl-base_5.38.2-5_arm64.deb ... Unpacking perl-base (5.38.2-5) over (5.36.0-7+deb12u1) ... Setting up perl-base (5.38.2-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16818 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.3-7_arm64.deb ... Unpacking libpam0g:arm64 (1.5.3-7) over (1.5.2-6+deb12u1) ... Setting up libpam0g:arm64 (1.5.3-7) ... (Reading database ... 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(both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_arm64.deb ... Unpacking libbz2-1.0:arm64 (1.0.8-5.1) over (1.0.8-5+b1) ... Setting up libbz2-1.0:arm64 (1.0.8-5.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16817 files and directories currently installed.) Preparing to unpack .../archives/usrmerge_39_all.deb ... Unpacking usrmerge (39) over (37~deb12u1) ... Setting up perl-modules-5.38 (5.38.2-5) ... Setting up libgdbm6t64:arm64 (1.23-6) ... Setting up libgdbm-compat4t64:arm64 (1.23-6) ... Setting up libperl5.38t64:arm64 (5.38.2-5) ... Setting up perl (5.38.2-5) ... Setting up usrmerge (39) ... removed '/lib64' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16817 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3.1_arm64.deb ... Unpacking coreutils (9.4-3.1) over (9.1-1) ... Setting up coreutils (9.4-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16822 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-9_arm64.deb ... Unpacking dash (0.5.12-9) over (0.5.12-2) ... Setting up dash (0.5.12-9) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16821 files and directories currently installed.) Preparing to unpack .../findutils_4.10.0-2_arm64.deb ... Unpacking findutils (4.10.0-2) over (4.9.0-4) ... Setting up findutils (4.10.0-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16819 files and directories currently installed.) Preparing to unpack .../gzip_1.12-1.1_arm64.deb ... Unpacking gzip (1.12-1.1) over (1.12-1) ... dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') Setting up gzip (1.12-1.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16822 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.1-9_arm64.deb ... Unpacking libsmartcols1:arm64 (2.40.1-9) over (2.38.1-5pureos1) ... Setting up libsmartcols1:arm64 (2.40.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16823 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40.1-9_arm64.deb ... Unpacking libuuid1:arm64 (2.40.1-9) over (2.38.1-5pureos1) ... Setting up libuuid1:arm64 (2.40.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16824 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.1-9_arm64.deb ... Unpacking util-linux (2.40.1-9) over (2.38.1-5pureos1) ... Setting up util-linux (2.40.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16797 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.40.1-9_arm64.deb ... Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.40.1-9) over (2.38.1-5pureos1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Setting up util-linux-extra (2.40.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16836 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240330-1_arm64.deb ... Unpacking libstdc++6:arm64 (14-20240330-1) over (12.2.0-14) ... Setting up libstdc++6:arm64 (14-20240330-1) ... dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested: libgnutls30:arm64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16836 files and directories currently installed.) Removing libhogweed6:arm64 (3.8.1-2) ... dpkg: libnettle8:arm64: dependency problems, but removing anyway as you requested: libgnutls30:arm64 depends on libnettle8 (>= 3.7~). Removing libnettle8:arm64 (3.8.1-2) ... Selecting previously unselected package libnettle8t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16822 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10-1_arm64.deb ... Unpacking libnettle8t64:arm64 (3.10-1) ... Setting up libnettle8t64:arm64 (3.10-1) ... Selecting previously unselected package libhogweed6t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16831 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10-1_arm64.deb ... Unpacking libhogweed6t64:arm64 (3.10-1) ... Setting up libhogweed6t64:arm64 (3.10-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16838 files and directories currently installed.) Preparing to unpack .../libunistring5_1.2-1_arm64.deb ... Unpacking libunistring5:arm64 (1.2-1) ... Setting up libunistring5:arm64 (1.2-1) ... dpkg: libgnutls30:arm64: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16844 files and directories currently installed.) Removing libgnutls30:arm64 (3.7.9-2+deb12u2) ... Selecting previously unselected package libgnutls30t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16815 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.5-4_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.5-4) ... Setting up libgnutls30t64:arm64 (3.8.5-4) ... dpkg: libapt-pkg6.0:arm64: dependency problems, but removing anyway as you requested: apt depends on libapt-pkg6.0 (>= 2.6.1). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16844 files and directories currently installed.) Removing libapt-pkg6.0:arm64 (2.6.1) ... Selecting previously unselected package libapt-pkg6.0t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16795 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.5_arm64.deb ... Unpacking libapt-pkg6.0t64:arm64 (2.9.5) ... Setting up libapt-pkg6.0t64:arm64 (2.9.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16845 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.49-2_arm64.deb ... Unpacking libgpg-error0:arm64 (1.49-2) over (1.46-1) ... Setting up libgpg-error0:arm64 (1.49-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16845 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-2_arm64.deb ... Unpacking liblz4-1:arm64 (1.9.4-2) over (1.9.4-1) ... Setting up liblz4-1:arm64 (1.9.4-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16845 files and directories currently installed.) Preparing to unpack .../libudev1_256.1-2_arm64.deb ... Unpacking libudev1:arm64 (256.1-2) over (252.22-1~deb12u1) ... Setting up libudev1:arm64 (256.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16845 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_arm64.deb ... Unpacking libxxhash0:arm64 (0.8.2-2+b1) over (0.8.1-1) ... Setting up libxxhash0:arm64 (0.8.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16846 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) over (3.4.4-1) ... Setting up libffi8:arm64 (3.4.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16846 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.7-2) over (2.3.3-1+b1) ... Setting up libidn2-0:arm64 (2.3.7-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16847 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.272_arm64.deb ... Unpacking libdebconfclient0:arm64 (0.272) over (0.270) ... Setting up libdebconfclient0:arm64 (0.272) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16847 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2_arm64.deb ... Unpacking libmd0:arm64 (1.1.0-2) over (1.0.4-2) ... Setting up libmd0:arm64 (1.1.0-2) ... Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16847 files and directories currently installed.) Preparing to unpack .../libbsd0_0.12.2-1_arm64.deb ... Unpacking libbsd0:arm64 (0.12.2-1) ... Setting up libbsd0:arm64 (0.12.2-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16853 files and directories currently installed.) Preparing to unpack .../login_1%3a4.15.2-3_arm64.deb ... Unpacking login (1:4.15.2-3) over (1:4.13+dfsg1-1+b1) ... Setting up login (1:4.15.2-3) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16815 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.2-2_arm64.deb ... Unpacking libacl1:arm64 (2.3.2-2) over (2.3.1-3) ... Setting up libacl1:arm64 (2.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16815 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-1_arm64.deb ... Unpacking libattr1:arm64 (1:2.5.2-1) over (1:2.5.1-4) ... Setting up libattr1:arm64 (1:2.5.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16815 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.4-1) ... Setting up libsemanage-common (3.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16815 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2+b1_arm64.deb ... Unpacking libsepol2:arm64 (3.5-2+b1) over (3.4-2.1) ... Setting up libsepol2:arm64 (3.5-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16816 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b3_arm64.deb ... Unpacking libsemanage2:arm64 (3.5-1+b3) over (3.4-1+b5) ... Setting up libsemanage2:arm64 (3.5-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16816 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.15.2-3_arm64.deb ... Unpacking passwd (1:4.15.2-3) over (1:4.13+dfsg1-1+b1) ... Setting up passwd (1:4.15.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16819 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) over (3.134) ... Setting up adduser (3.137) ... Installing new version of config file /etc/adduser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16813 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.43-7_arm64.deb ... Unpacking gpgv (2.2.43-7) over (2.2.40-1.1) ... Setting up gpgv (2.2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16813 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2023.3+deb12u1) ... Setting up debian-archive-keyring (2023.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16813 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1_arm64.deb ... Unpacking libseccomp2:arm64 (2.5.5-1) over (2.5.4-1+b3) ... Setting up libseccomp2:arm64 (2.5.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16812 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.5_arm64.deb ... Unpacking apt (2.9.5) over (2.6.1) ... Setting up apt (2.9.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16808 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66_all.deb ... Unpacking init-system-helpers (1.66) over (1.65.2) ... Setting up init-system-helpers (1.66) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16808 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5-2_all.deb ... Unpacking ncurses-base (6.5-2) over (6.4-4) ... Setting up ncurses-base (6.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16806 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.09-2_arm64.deb ... Unpacking sysvinit-utils (3.09-2) over (3.06-4) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.09-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16806 files and directories currently installed.) Preparing to unpack .../logsave_1.47.1-1_arm64.deb ... Unpacking logsave (1.47.1-1) over (1.47.0-2) ... dpkg: libext2fs2:arm64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16806 files and directories currently installed.) Removing libext2fs2:arm64 (1.47.0-2) ... Selecting previously unselected package libext2fs2t64:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16799 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.1-1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2 to /lib/aarch64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2.3 to /lib/aarch64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2 to /lib/aarch64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2.4 to /lib/aarch64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:arm64 (1.47.1-1) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up libext2fs2t64:arm64 (1.47.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16815 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.1-1_arm64.deb ... Unpacking e2fsprogs (1.47.1-1) over (1.47.0-2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty Preparing to unpack .../mount_2.40.1-9_arm64.deb ... Unpacking mount (2.40.1-9) over (2.38.1-5pureos1) ... Setting up libpython3.11-minimal:arm64 (3.11.9-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16816 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.8-1_arm64.deb ... Unpacking python3-minimal (3.11.8-1) over (3.11.2-1+b1) ... Preparing to unpack .../01-mawk_1.3.4.20240622-1_arm64.deb ... 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Preparing to unpack .../44-gcc-aarch64-linux-gnu_4%3a13.2.0-7_arm64.deb ... Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7) ... Selecting previously unselected package g++-aarch64-linux-gnu. Preparing to unpack .../45-g++-aarch64-linux-gnu_4%3a13.2.0-7_arm64.deb ... Unpacking g++-aarch64-linux-gnu (4:13.2.0-7) ... Preparing to unpack .../46-build-essential_12.10_arm64.deb ... Unpacking build-essential (12.10) over (12.9) ... Preparing to unpack .../47-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) over (20230311) ... Preparing to unpack .../48-libeatmydata1_131-2_arm64.deb ... Unpacking libeatmydata1:arm64 (131-2) over (130-2+b1) ... Preparing to unpack .../49-eatmydata_131-2_all.deb ... Unpacking eatmydata (131-2) over (130-2) ... Preparing to unpack .../50-libfakeroot_1.33-1_arm64.deb ... Unpacking libfakeroot:arm64 (1.33-1) over (1.31-1.2) ... Preparing to unpack .../51-fakeroot_1.33-1_arm64.deb ... Unpacking fakeroot (1.33-1) over (1.31-1.2) ... Preparing to unpack .../52-libss2_1.47.1-1_arm64.deb ... Unpacking libss2:arm64 (1.47.1-1) over (1.47.0-2) ... dpkg: warning: unable to delete old directory '/lib/aarch64-linux-gnu': Directory not empty Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up binutils-common:arm64 (2.42.50.20240625-1) ... Installing new version of config file /etc/gprofng.rc ... Setting up linux-libc-dev (6.9.7-1) ... Setting up libctf-nobfd0:arm64 (2.42.50.20240625-1) ... Setting up libgomp1:arm64 (14-20240330-1) ... Setting up bzip2 (1.0.8-5.1) ... Setting up libsframe1:arm64 (2.42.50.20240625-1) ... Setting up libfakeroot:arm64 (1.33-1) ... Setting up libjansson4:arm64 (2.14-2+b2) ... Setting up libkrb5support0:arm64 (1.21.2-1) ... Setting up gcc-12-base:arm64 (12.4.0-1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jul 8 03:51:30 UTC 2024. Universal Time is now: Mon Jul 8 03:51:30 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up gcc-13-base:arm64 (13.2.0-24) ... Setting up libmpfr6:arm64 (4.2.1-1+b1) ... Setting up xz-utils (5.6.2-1) ... Setting up libmpc3:arm64 (1.3.1-1+b2) ... Setting up libatomic1:arm64 (14-20240330-1) ... Setting up libss2:arm64 (1.47.1-1) ... Setting up libk5crypto3:arm64 (1.21.2-1) ... Setting up logsave (1.47.1-1) ... Setting up libubsan1:arm64 (14-20240330-1) ... Setting up mount (2.40.1-9) ... Setting up libhwasan0:arm64 (14-20240330-1) ... Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... Setting up libasan8:arm64 (14-20240330-1) ... Setting up libeatmydata1:arm64 (131-2) ... Setting up python3-minimal (3.11.8-1) ... Setting up mawk (1.3.4.20240622-1) ... Setting up libkrb5-3:arm64 (1.21.2-1) ... Setting up libtsan2:arm64 (14-20240330-1) ... Setting up libbinutils:arm64 (2.42.50.20240625-1) ... Setting up libisl23:arm64 (0.26-3+b2) ... Setting up libc-dev-bin (2.38-13) ... Setting up openssl (3.2.2-1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libcc1-0:arm64 (14-20240330-1) ... Setting up liblsan0:arm64 (14-20240330-1) ... Setting up libitm1:arm64 (14-20240330-1) ... Setting up libctf0:arm64 (2.42.50.20240625-1) ... Setting up eatmydata (131-2) ... Setting up cpp-12 (12.4.0-1) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-24) ... Setting up e2fsprogs (1.47.1-1) ... Installing new version of config file /etc/cron.d/e2scrub_all ... Installing new version of config file /etc/mke2fs.conf ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 8 removed; done. Setting up cpp-aarch64-linux-gnu (4:13.2.0-7) ... Setting up libgprofng0:arm64 (2.42.50.20240625-1) ... Setting up libgcc-12-dev:arm64 (12.4.0-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.2-1) ... Setting up libgcc-13-dev:arm64 (13.2.0-24) ... Setting up libc6-dev:arm64 (2.38-13) ... Setting up libstdc++-13-dev:arm64 (13.2.0-24) ... Setting up cpp-13 (13.2.0-24) ... Setting up libstdc++-12-dev:arm64 (12.4.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Setting up binutils-aarch64-linux-gnu (2.42.50.20240625-1) ... Setting up binutils (2.42.50.20240625-1) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-24) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... Setting up gcc-12 (12.4.0-1) ... Setting up gcc-13 (13.2.0-24) ... Setting up cpp (4:13.2.0-7) ... Setting up libnsl2:arm64 (1.3.0-3+b2) ... Setting up g++-12 (12.4.0-1) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-24) ... Setting up gcc-aarch64-linux-gnu (4:13.2.0-7) ... Setting up g++-13 (13.2.0-24) ... Setting up gcc (4:13.2.0-7) ... Setting up libnsl-dev:arm64 (1.3.0-3+b2) ... Setting up g++-aarch64-linux-gnu (4:13.2.0-7) ... Setting up g++ (4:13.2.0-7) ... Setting up build-essential (12.10) ... Processing triggers for libc-bin (2.38-13) ... Processing triggers for debianutils (5.20) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... build-essential is already the newest version (12.10). dpkg-dev is already the newest version (1.21.22pureos1). fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌───────────────────────────────────────────────┐ │ Installing package build-dependencies │ └───────────────────────────────────────────────┘ Note, using directory './' to get the build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils clustalw cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dssp dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx gettext gettext-base gfortran-13 gfortran-13-aarch64-linux-gnu groff-base ibverbs-providers icu-devtools intltool-debian libamd-comgr2 libamdhip64-5 libarchive-zip-perl libarchive13t64 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-all-dev libboost-atomic-dev libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-container-dev libboost-container1.83-dev libboost-container1.83.0 libboost-context-dev libboost-context1.83-dev libboost-context1.83.0 libboost-coroutine-dev libboost-coroutine1.83-dev libboost-coroutine1.83.0 libboost-date-time-dev libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-exception-dev libboost-exception1.83-dev libboost-fiber-dev libboost-fiber1.83-dev libboost-fiber1.83.0 libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.83-dev libboost-graph-parallel1.83.0 libboost-graph1.83-dev libboost-graph1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-json-dev libboost-json1.83-dev libboost-json1.83.0 libboost-locale-dev libboost-locale1.83-dev libboost-locale1.83.0 libboost-log-dev libboost-log1.83-dev libboost-log1.83.0 libboost-math-dev libboost-math1.83-dev libboost-math1.83.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.83-dev libboost-mpi-python1.83.0 libboost-mpi1.83-dev libboost-mpi1.83.0 libboost-nowide-dev libboost-nowide1.83-dev libboost-nowide1.83.0 libboost-numpy-dev libboost-numpy1.83-dev libboost-numpy1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost-random-dev libboost-random1.83-dev libboost-random1.83.0 libboost-regex-dev libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization-dev libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-stacktrace-dev libboost-stacktrace1.83-dev libboost-stacktrace1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost-test-dev libboost-test1.83-dev libboost-test1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost-timer-dev libboost-timer1.83-dev libboost-timer1.83.0 libboost-tools-dev libboost-type-erasure-dev libboost-type-erasure1.83-dev libboost-type-erasure1.83.0 libboost-url-dev libboost-url1.83-dev libboost-url1.83.0 libboost-wave-dev libboost-wave1.83-dev libboost-wave1.83.0 libboost1.83-dev libboost1.83-tools-dev libbrotli1 libcbor0.10 libcifpp-data libcifpp5 libcups2t64 libcurl4t64 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1t64 libevdev2 libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfido2-1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgfortran-13-dev libgfortran5 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhsa-runtime64-1 libhsakmt1 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libice6 libicu-dev libicu72 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjsoncpp25 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc-dev liblerc4 libllvm17t64 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1t64 libmd4c0 libmtdev1t64 libmunge2 libncursesw6 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopengl-dev libopengl0 libopenjp2-7 libopenmm-dev libopenmm-plugins libopenmm8.1 libopenmpi-dev libopenmpi3t64 libpciaccess0 libpcre2-16-0 libpipeline1 libpkgconf3 libpmix-dev libpmix2t64 libpng-dev libpng16-16t64 libproc2-0 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-stdlib libpython3.11t64 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqhull-r8.0 libqt5concurrent5t64 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5-dev libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libraqm0 librdmacm1t64 libreadline8t64 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv-dev libsharpyuv0 libsm6 libsqlite3-0 libsqlite3-dev libssh2-1t64 libtcl8.6 libtiff-dev libtiff6 libtiffxx6 libtk8.6 libtool libuchardet0 libucx0 libuv1t64 libvulkan-dev libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 libwebp-dev libwebp7 libwebpdecoder3 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft2 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxxf86vm1 libz3-4 libzstd-dev m4 man-db media-types mpi-default-bin mpi-default-dev netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config pkgconf pkgconf-bin po-debconf procps python-matplotlib-data python3 python3-appdirs python3-attr python3-brotli python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-pyparsing python3-pyqt5 python3-pyqt5.sip python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3.11 python3.11-dev qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser readline-common sensible-utils shared-mime-info tk8.6-blt2.5 unicode-data voronota x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 432 newly installed, 0 to remove and 0 not upgraded. Need to get 51.5 MB/282 MB of archives. After this operation, 1533 MB of additional disk space will be used. Get:1 https://repo.pureos.net/pureos landing/main arm64 openssh-client arm64 1:9.7p1-7 [901 kB] Get:2 https://repo.pureos.net/pureos landing/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get:3 https://repo.pureos.net/pureos landing/main all dh-python all 6.20240603 [109 kB] Get:4 https://repo.pureos.net/pureos landing/main arm64 icu-devtools arm64 72.1-5 [194 kB] Get:5 https://repo.pureos.net/pureos landing/main arm64 libicu-dev arm64 72.1-5 [10.2 MB] Get:6 https://repo.pureos.net/pureos landing/main arm64 libhwloc15 arm64 2.11.0-2 [140 kB] Get:7 https://repo.pureos.net/pureos landing/main arm64 libhwloc-plugins arm64 2.11.0-2 [17.8 kB] Get:8 https://repo.pureos.net/pureos landing/main arm64 libhwloc-dev arm64 2.11.0-2 [235 kB] Get:9 https://repo.pureos.net/pureos landing/main arm64 libglib2.0-0t64 arm64 2.80.3-1 [1391 kB] Get:10 https://repo.pureos.net/pureos landing/main arm64 libopenmm8.1 arm64 8.1.1+dfsg-1 [893 kB] Get:11 https://repo.pureos.net/pureos landing/main arm64 libopenmm-dev arm64 8.1.1+dfsg-1 [329 kB] Get:12 https://repo.pureos.net/pureos landing/main arm64 libopenmm-plugins arm64 8.1.1+dfsg-1 [1199 kB] Get:13 https://repo.pureos.net/pureos landing/main arm64 libpython3.12-minimal arm64 3.12.4-1 [804 kB] Get:14 https://repo.pureos.net/pureos landing/main arm64 libpython3.12-stdlib arm64 3.12.4-1 [1886 kB] Get:15 https://repo.pureos.net/pureos landing/main arm64 libpython3.12t64 arm64 3.12.4-1 [1950 kB] Get:16 https://repo.pureos.net/pureos landing/main arm64 libqt5core5t64 arm64 5.15.13+dfsg-2 [1702 kB] Get:17 https://repo.pureos.net/pureos landing/main arm64 libqt5concurrent5t64 arm64 5.15.13+dfsg-2 [43.8 kB] Get:18 https://repo.pureos.net/pureos landing/main arm64 libqt5dbus5t64 arm64 5.15.13+dfsg-2 [206 kB] Get:19 https://repo.pureos.net/pureos landing/main arm64 libqt5network5t64 arm64 5.15.13+dfsg-2 [652 kB] Get:20 https://repo.pureos.net/pureos landing/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [105 kB] Get:21 https://repo.pureos.net/pureos landing/main arm64 libqt5gui5t64 arm64 5.15.13+dfsg-2 [3143 kB] Get:22 https://repo.pureos.net/pureos landing/main arm64 libqt5widgets5t64 arm64 5.15.13+dfsg-2 [2267 kB] Get:23 https://repo.pureos.net/pureos landing/main arm64 libqt5xml5t64 arm64 5.15.13+dfsg-2 [121 kB] Get:24 https://repo.pureos.net/pureos landing/main arm64 libqt5designer5 arm64 5.15.13-3 [2721 kB] Get:25 https://repo.pureos.net/pureos landing/main arm64 libqt5sql5t64 arm64 5.15.13+dfsg-2 [121 kB] Get:26 https://repo.pureos.net/pureos landing/main arm64 libqt5help5 arm64 5.15.13-3 [144 kB] Get:27 https://repo.pureos.net/pureos landing/main arm64 libqt5opengl5t64 arm64 5.15.13+dfsg-2 [142 kB] Get:28 https://repo.pureos.net/pureos landing/main arm64 libqt5printsupport5t64 arm64 5.15.13+dfsg-2 [198 kB] Get:29 https://repo.pureos.net/pureos landing/main arm64 libqt5test5t64 arm64 5.15.13+dfsg-2 [137 kB] Get:30 https://repo.pureos.net/pureos landing/main arm64 qt5-qmake-bin arm64 5.15.13+dfsg-2 [910 kB] Get:31 https://repo.pureos.net/pureos landing/main arm64 qt5-qmake arm64 5.15.13+dfsg-2 [223 kB] Get:32 https://repo.pureos.net/pureos landing/main arm64 qtbase5-dev-tools arm64 5.15.13+dfsg-2 [717 kB] Get:33 https://repo.pureos.net/pureos landing/main arm64 qtbase5-dev arm64 5.15.13+dfsg-2 [1119 kB] Get:34 https://repo.pureos.net/pureos landing/main arm64 libqt5opengl5-dev arm64 5.15.13+dfsg-2 [50.6 kB] Get:35 https://repo.pureos.net/pureos landing/main arm64 libsqlite3-dev arm64 3.46.0-1 [1048 kB] Get:36 https://repo.pureos.net/pureos landing/main all python3-sympy all 1.12.1-1 [3869 kB] Get:37 https://repo.pureos.net/pureos landing/main arm64 python3-pyqt5 arm64 5.15.10+dfsg-1+b3 [2306 kB] Fetched 51.5 MB in 9s (5429 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package media-types. 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Setting up libglapi-mesa:arm64 (24.0.8-1) ... Setting up libboost-test1.83.0:arm64 (1.83.0-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:arm64 (14-20240330-1) ... Setting up libboost-fiber1.83.0:arm64 (1.83.0-3) ... Setting up libvulkan1:arm64 (1.3.283.0-1) ... Setting up libboost-atomic1.83-dev:arm64 (1.83.0-3) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.4.0-0.1) ... Setting up liblzma-dev:arm64 (5.6.2-1) ... Setting up libxcb-dri2-0:arm64 (1.17.0-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libboost-atomic-dev:arm64 (1.83.0.2+b2) ... Setting up libnuma1:arm64 (2.0.18-1) ... Setting up dwz (0.15-1+b1) ... Setting up libmtdev1t64:arm64 (1.1.6-1.2) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:arm64 (2.3.2-1+b1) ... Setting up libxshmfence1:arm64 (1.3-1+b1) ... Setting up libboost-exception1.83-dev:arm64 (1.83.0-3) ... Setting up librhash0:arm64 (1.4.3-3+b1) ... Setting up libtiff6:arm64 (4.5.1+git230720-4) ... Setting up libxcb-randr0:arm64 (1.17.0-2) ... Setting up libboost-stacktrace-dev:arm64 (1.83.0.2+b2) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libnl-3-200:arm64 (3.7.0-0.3) ... Setting up libboost-graph1.83.0:arm64 (1.83.0-3) ... Setting up openmpi-common (4.1.6-13.3) ... Setting up clustalw (2.1+lgpl-7) ... Setting up libmd4c0:arm64 (0.4.8-1+b1) ... Setting up libboost-container1.83.0:arm64 (1.83.0-3) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b3) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libboost-type-erasure1.83.0:arm64 (1.83.0-3) ... Setting up cmake-data (3.29.6-1) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libglu1-mesa:arm64 (9.0.2-1.1+b1) ... Setting up libboost-system1.83-dev:arm64 (1.83.0-3) ... Setting up libssh2-1t64:arm64 (1.11.0-5) ... Setting up libboost-math1.83.0:arm64 (1.83.0-3) ... Setting up libopengl-dev:arm64 (1.7.0-1+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:arm64 (1.15.0-1) ... Setting up libsharpyuv-dev:arm64 (1.4.0-0.1) ... Setting up libgfortran-13-dev:arm64 (13.2.0-24) ... Setting up python-matplotlib-data (3.6.3-2) ... Setting up libwebpmux3:arm64 (1.4.0-0.1) ... Setting up libtiffxx6:arm64 (4.5.1+git230720-4) ... Setting up libdeflate-dev:arm64 (1.20-1) ... Setting up libopenmm8.1 (8.1.1+dfsg-1) ... Setting up libdrm-common (2.4.121-2) ... Setting up libevdev2:arm64 (1.13.2+dfsg-1) ... Setting up readline-common (8.2-4) ... Setting up libicu-dev:arm64 (72.1-5) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libboost1.83-tools-dev (1.83.0-3) ... Setting up libgudev-1.0-0:arm64 (238-5) ... Setting up qtchooser (66-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libwacom-common (2.10.0-2) ... Setting up libxkbcommon0:arm64 (1.6.0-1+b1) ... Setting up libwayland-client0:arm64 (1.21.0-1pureos3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... Setting up libx11-xcb1:arm64 (2:1.8.7-1+b1) ... Setting up libice6:arm64 (2:1.0.10-1+b1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libboost-wave1.83.0:arm64 (1.83.0-3) ... Setting up gettext (0.22.5-1) ... Setting up libboost-coroutine1.83.0:arm64 (1.83.0-3) ... Setting up libxau-dev:arm64 (1:1.0.9-1+b1) ... Setting up libboost-chrono1.83-dev:arm64 (1.83.0-3) ... Setting up qt5-qmake:arm64 (5.15.13+dfsg-2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up libboost-math1.83-dev:arm64 (1.83.0-3) ... Setting up libtool (2.4.7-7) ... Setting up libboost-chrono-dev:arm64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-1+b2) ... Setting up libwacom9:arm64 (2.10.0-2) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libboost-log1.83.0 (1.83.0-3) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up openssh-client (1:9.7p1-7) ... Setting up libboost-math-dev:arm64 (1.83.0.2+b2) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... Setting up libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libboost-system-dev:arm64 (1.83.0.2+b2) ... Setting up libpng-dev:arm64 (1.6.43-5) ... Setting up libavahi-common3:arm64 (0.8-13+b2) ... Setting up libboost-serialization1.83-dev:arm64 (1.83.0-3) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3) ... Setting up libjbig-dev:arm64 (2.1-6.1+b1) ... Setting up libboost-locale1.83.0:arm64 (1.83.0-3) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up libboost-test1.83-dev:arm64 (1.83.0-3) ... Setting up gfortran-13-aarch64-linux-gnu (13.2.0-24) ... Setting up libboost-url1.83-dev:arm64 (1.83.0-3) ... Setting up libboost-tools-dev (1.83.0.2+b2) ... Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-3) ... Setting up libboost-exception-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-nowide-dev (1.83.0.2+b2) ... Setting up libopenmm-dev (8.1.1+dfsg-1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-1) ... Setting up pkgconf:arm64 (1.8.1-3) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.26.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:arm64 (2.0.18-1) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.3) ... Setting up libxnvctrl0:arm64 (535.171.04-1) ... Setting up libboost-test-dev:arm64 (1.83.0.2+b2) ... Setting up libcifpp5:arm64 (5.0.7.1-3+b1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:arm64 (2.4.7-7+b1) ... Setting up libxdmcp-dev:arm64 (1:1.1.2-3+b1) ... Setting up libwebp-dev:arm64 (1.4.0-0.1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:arm64 (1.83.0-3) ... Setting up libllvm17t64:arm64 (1:17.0.6-12+b1) ... Setting up libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Setting up libtiff-dev:arm64 (4.5.1+git230720-4) ... Setting up libxfixes3:arm64 (1:6.0.0-2+b1) ... Setting up libboost-container1.83-dev:arm64 (1.83.0-3) ... Setting up gfortran-13 (13.2.0-24) ... Setting up libboost-date-time1.83-dev:arm64 (1.83.0-3) ... Setting up shared-mime-info (2.4-5) ... Warning: program compiled against libxml 212 using older 209 Setting up libboost-numpy-dev (1.83.0.2+b2) ... Setting up libxkbcommon-x11-0:arm64 (1.6.0-1+b1) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-3) ... Setting up pkg-config:arm64 (1.8.1-3) ... Setting up libboost-random1.83-dev:arm64 (1.83.0-3) ... Setting up libboost-serialization-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-date-time-dev:arm64 (1.83.0.2+b2) ... Setting up libjs-sphinxdoc (7.2.6-9) ... Setting up libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libopenmm-plugins (8.1.1+dfsg-1) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:arm64 (2.4.121-2) ... Setting up libnl-3-dev:arm64 (3.7.0-0.3) ... Setting up groff-base (1.23.0-4) ... Setting up libxslt1.1:arm64 (1.1.35-1+b1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2+b1) ... Setting up libboost-url-dev:arm64 (1.83.0.2+b2) ... Setting up libhwloc-dev:arm64 (2.11.0-2) ... Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up libxss1:arm64 (1:1.2.3-1+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up libboost-regex-dev:arm64 (1.83.0.2+b2) ... Setting up libsm6:arm64 (2:1.2.3-1+b1) ... Setting up libarchive13t64:arm64 (3.7.2-2.1) ... Setting up libfftw3-dev:arm64 (3.3.10-1+b2) ... Setting up libavahi-client3:arm64 (0.8-13+b2) ... Setting up libboost-timer-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:arm64 (1.83.0.2+b2) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libdrm-amdgpu1:arm64 (2.4.121-2) ... Setting up libboost-thread1.83-dev:arm64 (1.83.0-3) ... Setting up libinput10:arm64 (1.26.0-1) ... Setting up libibverbs1:arm64 (50.0-2+b1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libdrm-nouveau2:arm64 (2.4.121-2) ... Setting up libboost-json1.83-dev:arm64 (1.83.0-3) ... Setting up libxcb1-dev:arm64 (1.17.0-2) ... Setting up libboost-wave1.83-dev:arm64 (1.83.0-3) ... Setting up libpython3.12-stdlib:arm64 (3.12.4-1) ... Setting up libboost-locale1.83-dev:arm64 (1.83.0-3) ... Setting up libcurl4t64:arm64 (8.8.0-1) ... Setting up libgbm1:arm64 (24.0.8-1) ... Setting up ibverbs-providers:arm64 (50.0-2+b1) ... Setting up libdrm-radeon1:arm64 (2.4.121-2) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.9-1) ... Setting up libtk8.6:arm64 (8.6.14-1) ... Setting up libgl1-mesa-dri:arm64 (24.0.8-1) ... Setting up libpython3.11t64:arm64 (3.11.9-1) ... Setting up libboost-type-erasure1.83-dev:arm64 (1.83.0-3) ... Setting up libx11-dev:arm64 (2:1.8.7-1+b1) ... Setting up libboost-random-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-locale-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-wave-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up dssp (4.2.2-2) ... Setting up libhwloc-plugins:arm64 (2.11.0-2) ... Setting up man-db (2.12.1-2) ... Building database of manual pages ... Setting up libboost-graph1.83-dev:arm64 (1.83.0-3) ... Setting up libboost-container-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-type-erasure-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-context1.83-dev:arm64 (1.83.0-3) ... Setting up libpython3.12t64:arm64 (3.12.4-1) ... Setting up libnl-route-3-dev:arm64 (3.7.0-0.3) ... Setting up libboost-coroutine1.83-dev:arm64 (1.83.0-3) ... Setting up libqt5core5t64:arm64 (5.15.13+dfsg-2) ... Setting up libegl-mesa0:arm64 (24.0.8-1) ... Setting up libboost-fiber1.83-dev:arm64 (1.83.0-3) ... Setting up libpython3.11-dev:arm64 (3.11.9-1) ... Setting up libraqm0:arm64 (0.10.1-1+b1) ... Setting up libevent-dev (2.1.12-stable-10) ... Setting up libpmix2t64:arm64 (5.0.2-3) ... Setting up libxext-dev:arm64 (2:1.3.4-1+b1) ... Setting up libegl1:arm64 (1.7.0-1+b1) ... Setting up libqt5sql5t64:arm64 (5.15.13+dfsg-2) ... Setting up cmake (3.29.6-1) ... Setting up librdmacm1t64:arm64 (50.0-2+b1) ... Setting up libboost-coroutine-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-log1.83-dev (1.83.0-3) ... Setting up libboost-json-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-log-dev (1.83.0.2+b2) ... Setting up libcups2t64:arm64 (2.4.10-1) ... Setting up libpmix-dev:arm64 (5.0.2-3) ... Setting up libhsakmt1:arm64 (5.7.0-1) ... Setting up libboost-thread-dev:arm64 (1.83.0.2+b2) ... Setting up libpython3-stdlib:arm64 (3.11.8-1) ... Setting up libboost-fiber-dev:arm64 (1.83.0.2+b2) ... Setting up libfabric1:arm64 (1.17.0-3+b1) ... Setting up libboost-graph-dev:arm64 (1.83.0.2+b2) ... Setting up python3.11 (3.11.9-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libqt5dbus5t64:arm64 (5.15.13+dfsg-2) ... Setting up libglx-mesa0:arm64 (24.0.8-1) ... Setting up libpython3-dev:arm64 (3.11.8-1) ... Setting up libglx0:arm64 (1.7.0-1+b1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libqt5concurrent5t64:arm64 (5.15.13+dfsg-2) ... Setting up blt (2.5.3+dfsg-7) ... Setting up libqt5network5t64:arm64 (5.15.13+dfsg-2) ... Setting up libqt5xml5t64:arm64 (5.15.13+dfsg-2) ... Setting up debhelper (13.16) ... Setting up python3 (3.11.8-1) ... Setting up libboost-context-dev:arm64 (1.83.0.2+b2) ... Setting up libqt5test5t64:arm64 (5.15.13+dfsg-2) ... Setting up libibverbs-dev:arm64 (50.0-2+b1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:arm64 (10.3.0-2) ... Setting up qtbase5-dev-tools (5.15.13+dfsg-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up libgl1:arm64 (1.7.0-1+b1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-pyqt5.sip (12.13.0-1+b1) ... Setting up python3-lxml:arm64 (5.2.1-1) ... Setting up libhsa-runtime64-1 (5.7.1-2) ... Setting up libglx-dev:arm64 (1.7.0-1+b1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up libgl-dev:arm64 (1.7.0-1+b1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... Setting up python3-sympy (1.12.1-1) ... Setting up python3-attr (23.2.0-2) ... Setting up libvulkan-dev:arm64 (1.3.283.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up libegl-dev:arm64 (1.7.0-1+b1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up python3-tk:arm64 (3.12.3-3.1) ... Setting up python3-fs (2.4.16-4) ... Setting up libqt5gui5t64:arm64 (5.15.13+dfsg-2) ... Setting up libamdhip64-5 (5.7.1-3) ... Setting up python3-pil.imagetk:arm64 (10.3.0-2) ... Setting up python3-dev (3.11.8-1) ... Setting up libboost-python1.83-dev (1.83.0-3) ... Setting up libglu1-mesa-dev:arm64 (9.0.2-1.1+b1) ... Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up python3-contourpy (1.0.7-3) ... Setting up dh-python (6.20240603) ... Setting up libucx0:arm64 (1.16.0+ds-5) ... Setting up python3-scipy (1.12.0-2) ... Setting up libqt5widgets5t64:arm64 (5.15.13+dfsg-2) ... Setting up libqt5help5:arm64 (5.15.13-3) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up libopenmpi3t64:arm64 (4.1.6-13.3) ... Setting up libqt5opengl5t64:arm64 (5.15.13+dfsg-2) ... Setting up libboost-mpi1.83.0 (1.83.0-3) ... Setting up openmpi-bin (4.1.6-13.3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libqt5printsupport5t64:arm64 (5.15.13+dfsg-2) ... Setting up libboost-graph-parallel1.83.0 (1.83.0-3) ... Setting up libqt5designer5:arm64 (5.15.13-3) ... Setting up mpi-default-bin (1.15) ... Setting up qtbase5-dev:arm64 (5.15.13+dfsg-2) ... Setting up libopenmpi-dev:arm64 (4.1.6-13.3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up libboost-graph-parallel1.83-dev (1.83.0-3) ... Setting up python3-pyqt5 (5.15.10+dfsg-1+b3) ... Setting up libboost-mpi-python1.83.0 (1.83.0-3) ... Setting up libqt5opengl5-dev:arm64 (5.15.13+dfsg-2) ... Setting up libboost-graph-parallel-dev (1.83.0.2+b2) ... Setting up mpi-default-dev (1.15) ... Setting up libboost-mpi1.83-dev (1.83.0-3) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libboost-mpi-python1.83-dev (1.83.0-3) ... Setting up libboost-mpi-python-dev (1.83.0.2+b2) ... Setting up libboost-all-dev (1.83.0.2+b2) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Processing triggers for libc-bin (2.38-13) ... ┌───────────────┐ │ Build │ └───────────────┘ dpkg-buildpackage: info: source package openstructure dpkg-buildpackage: info: source version 2.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: host architecture arm64  dpkg-source --before-build .  debian/rules clean dh clean --with python3 dh_clean  debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/srv/build/openstructure-2.5.0' dh_auto_configure -- -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/aarch64-linux-gnu/openmm/plugins cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/aarch64-linux-gnu/openmm/plugins .. -- The CXX compiler identification is GNU 13.2.0 -- The C compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done CMake Warning (dev) at cmake_support/OST.cmake:892 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): cmake_support/OST.cmake:921 (get_compiler_version) CMakeLists.txt:174 (setup_compiler_flags) This warning is for project developers. Use -Wno-dev to suppress it.  -- Found Python: /usr/bin/python3 (found suitable version "3.11.9", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed -- Found Boost package: python311 -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: unit_test_framework -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: filesystem system -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: iostreams -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: program_options -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: regex -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.31") found components: thread -- Found OpenGL: /usr/lib/aarch64-linux-gnu/libOpenGL.so -- Found EIGEN: /usr/include/eigen3 (Required is at least version "3.2.0") -- Found SQLITE3: /usr/lib/aarch64-linux-gnu/libsqlite3.so (Required is at least version "3.7.13") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found version "1.6.43") -- Found FFTW: /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Found TIFF: /usr/lib/aarch64-linux-gnu/libtiff.so (found version "4.5.1") -- Found OpenMM: /usr/lib/aarch64-linux-gnu/libOpenMM.so -- Searching for python module PyQt5 for /usr/bin/python3 -- Found python module PyQt5 -- Searching for python module PyQt5.sip for /usr/bin/python3 -- Found python module PyQt5.sip  -- OpenStructure will be built with the following options: Install Prefix (-DPREFIX) : /usr RPath in install (-DUSE_RPATH) : OFF Info support (-DENABLE_INFO) : ON Graphical interface (-DENABLE_GUI) : ON OpenGL support (-DENABLE_GFX) : ON Shader support (-DUSE_SHADER) : OFF Numpy support (-DUSE_NUMPY) : OFF SpaceNav Device support (-DENABLE_SPNAV) : OFF OpenMM support (-DENABLE_MM) : ON OpenMM plugins (-DOPEN_MM_PLUGIN_DIR) : /usr/lib/aarch64-linux-gnu/openmm/plugins Optimize (-DOPTIMIZE) : ON Profiling support (-DPROFILE) : OFF Double Precision (-DUSE_DOUBLE_PRECISION) : OFF Compound Lib (-DCOMPOUND_LIB) : NONE TMAlign and TMScore (-DCOMPILE_TMTOOLS) : OFF Static Libraries (-DENABLE_STATIC) : OFF Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON Hidden object visibility (-DHIDDEN_VISIBILITY) : OFF -- Configuring done (6.9s) -- Generating done (1.9s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED  -- Build files have been written to: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu make[1]: Leaving directory '/srv/build/openstructure-2.5.0' dh_auto_build -a cd obj-aarch64-linux-gnu && make -j32 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/srv/build/openstructure-2.5.0 -B/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/CMakeFiles /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color=" make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake "--color=" make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/bindings/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake "--color=" make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/conop/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake "--color=" make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/db/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake "--color=" make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/geom/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake "--color=" make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gfx/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake "--color=" make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/share /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake "--color=" make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/share /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake "--color=" make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake "--color=" make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake "--color=" make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake "--color=" make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/img/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake "--color=" make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/img/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake "--color=" make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/info/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake "--color=" make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/io/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake "--color=" make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake "--color=" make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake "--color=" make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/mm/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/seq/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/seq/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/actions /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/actions /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./__init__.py make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.5.0/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /srv/build/openstructure-2.5.0/cmake_support/substitute.cmake make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/conop/./__init__.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/db/./__init__.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/geom/./__init__.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gfx/./__init__.py make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/add_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/images/logo-small.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/__init__.py make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/dng/__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/dng/__init__.py make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./__init__.py make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/img/./__init__.py make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/img/alg/./__init__.py make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/info/./__init__.py make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/io/./__init__.py make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/./__init__.py make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./__init__.py make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/mm/./__init__.py make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/seq/./__init__.py make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/./__init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/seq/alg/./__init__.py make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.5.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.11.9 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.11/dist-packages/ -P /srv/build/openstructure-2.5.0/cmake_support/substitute.cmake make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.5.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.11.9 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.11/dist-packages/ -P /srv/build/openstructure-2.5.0/cmake_support/substitute.cmake make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.5.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.11.9 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.11/dist-packages/ -P /srv/build/openstructure-2.5.0/cmake_support/substitute.cmake make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/srv/build/openstructure-2.5.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.11.9 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.11/dist-packages/ -P /srv/build/openstructure-2.5.0/cmake_support/substitute.cmake make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/actions/ost-compare-ligand-structures /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-ligand-structures cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/bin cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./lga.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./lga.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/pymod/./cleanup.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/conop/./cleanup.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/pymod/./py_gfx_obj.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gfx/./py_gfx_obj.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/close_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/dng/termuse.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/dng/termuse.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/color_options_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/color_options_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./init_context_menu.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./init_context_menu.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/pymod/./remote.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/io/./remote.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/pymod/./antechamber.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/mm/./antechamber.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./views.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./views.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/./mat.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/seq/alg/./mat.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/actions/ost-compare-structures /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 0%] Built target ost_geom_pymod [ 0%] Built target ost_db_pymod [ 0%] Built target gui_images [ 0%] Built target subst___init__.py [ 0%] Built target ost_img_pymod [ 0%] Built target ost_info_pymod [ 0%] Built target ost_mol_pymod [ 0%] Built target ost_img_alg_pymod [ 0%] Built target ost_seq_pymod cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/dng/superpositiondialog.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/dng/superpositiondialog.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./hbplus.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./hbplus.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/critical_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./init_menubar.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./init_menubar.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/color_select_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/color_select_widget.py make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/pymod/./repository.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/io/./repository.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 0%] Built target subst_ost_startup.py [ 0%] Built target subst_ost_config [ 0%] Built target subst_ost cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./superpose.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./superpose.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/actions/ost-compare-structures-legacy /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures-legacy [ 0%] Built target subst_dng cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/./renumber.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/seq/alg/./renumber.py make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake "--color=" [ 0%] Built target ost_mol_mm_pymod [ 0%] Built target ost_gfx_pymod [ 0%] Built target ost_conop_pymod cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/tests cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/dng/init.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/dng/init.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/combo_options_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/combo_options_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./init_spacenav.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./init_spacenav.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/delete_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./qsscoring.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./qsscoring.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./msms.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./msms.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/./aaindex.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/seq/alg/./aaindex.py make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./settings.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./settings.py [ 0%] Built target ost_io_pymod [ 0%] Built target actions make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/distance_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./init_splash.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./init_splash.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/cpk_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/cpk_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./tmtools.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./tmtools.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/dng/menu.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/dng/menu.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/aaindex1 /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex1 cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./trajectory_analysis.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./trajectory_analysis.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./stutil.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./stutil.py [ 0%] Built target create_stage make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/find_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./dssp.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./dssp.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./trajectory_viewer.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./trajectory_viewer.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/custom_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/custom_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./structure_analysis.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./structure_analysis.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./table.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./table.py make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/aaindex2 /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex2 make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/geom/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color=" make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/config /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color=" make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color=" make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/seq/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color=" make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/info/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color=" make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color=" make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/bindings/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color=" make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/db/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/conop/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color=" make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/seq/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/img/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/img/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/io/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gfx/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/gui/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/mol/mm/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake "--color=" [ 0%] Built target ost_gui_dng_pymod cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./helix_kinks.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./helix_kinks.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./clustalw.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./clustalw.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/gradient_editor_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/gradient_editor_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./helpwidget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./helpwidget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/information_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./table_selector.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./table_selector.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/pymod/aaindex3 /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex3 make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/export_helper/vector.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/config/./base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./base.hh make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/export_helper/generic_property_def.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/impl/sequence_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info.hh make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/src/./wrap_tmalign.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/pointer_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./sqlite_wrap.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./conop.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./conop.hh make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./alignment_opts.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/raster_image/raster_image.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./anisotropic.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./svd_superpose.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/chemdict_parser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/map_iso_gen.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./forcefield.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/gradient_info_handler.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/gradient_info_handler.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./utils.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./utils.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./xmlrunner.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./xmlrunner.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./hbond.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./hbond.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/map_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./table.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./table.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/config/./config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./def.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./def.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_error.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_error.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/impl/sequence_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/atom_group.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./clip_alignment.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./sqlite_conv.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./processor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./processor.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/dispatch.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/star_parser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_parser.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./auto_correlate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./ff_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_option_group.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/map_iso_gen_s.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh [ 0%] Built target ost_seq_alg_pymod [ 0%] Built target ost_bindings_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./naccess.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./naccess.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/gradient_list_model.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/gradient_list_model.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/./gosty_startup.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/./gosty_startup.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/pymod/./testutils.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/./testutils.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/export_helper/vec_to_list_conv.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./lddt.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./lddt.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/menubar_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/config/./dllexport.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./dllexport.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./exc.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./exc.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/atom_prop.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./conservation.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/mmcif_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./clear.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clear.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./amino_acids.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./amino_acids.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./sec_structure_segments.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./buildingblock.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/map_iso_gen_s.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/atom_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/rigid_body_manipulator_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/gradient_preset_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/gradient_preset_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/config/./version.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./version.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/impl/sequence_list_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/__init__.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./geom.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./geom.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/test_utils/compare_files.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/test_utils/compare_files.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./qsscore.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./qsscore.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./hhblits.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./hhblits.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./contact_prediction_score.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./linear_indexer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./linear_indexer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/mmcif_info.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./diag.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./diag.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./clip_min_max.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./local_dist_diff_test.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/map_iso_spec.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./block_modifiers.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh [ 0%] Built target ost_gui_pymod cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./binary_container.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./binary_container.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/impl/sequence_list_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/atom_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./scoring.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./scoring.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./conjugate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/hsc_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/hsc_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/selection_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/io_profile.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./hhblits2.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./hhblits2.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./distance_test_common.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./model_check.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./model_check.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./contact_weight_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./mat.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./generic_property.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./generic_property.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/selection_tool.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./gromacs_block_modifiers.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/map_octree.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh [ 0%] Built target ost_base_pymod [ 0%] Built target ost_config_headers make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./integrity_error.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./integrity_error.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/dcd_io.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./mat2.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat2.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./distance_map.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./convolute.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./convolute.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_base_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/octree_isocont.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_group.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_group.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/measure_tool.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./sequence_list.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_list.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./distance_rmsd_test.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/show_sidebar_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./hhblits3.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./hhblits3.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./chain_mapping.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./chain_mapping.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./heuristic.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./heuristic.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/db/src/./extract_data_helper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./heuristic_block_modifiers.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/chain_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/config /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color=" cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./correlate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./correlate.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./sequence_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./blast.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./blast.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_crd_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./invalid_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./invalid_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./entropy.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/immutable_preset_info_handler.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/immutable_preset_info_handler.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/cartoon_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_option.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./interaction.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/chain_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./superpose_frames.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/site_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./mat3.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat3.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_def.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_item.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_item.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./compound.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./stereochemistry.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./stereochemistry.py make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 0%] Built target ost_db_headers [ 0%] Built target ost_config cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./ptr_observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./ptr_observer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/custom_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./filter_clashes.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./compound_lib.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./cross_correlate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/split_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./alignment_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/init_inspector.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/init_inspector.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./ligand_scoring.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./ligand_scoring.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./mat4.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat4.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./cadscore.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./cadscore.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./global_align.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_pqr_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_manager.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./settings.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./settings.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/connector_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_factory.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./ins_del.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/warning_icon.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/./dockq.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/mol/alg/./dockq.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_options_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./kclust.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./kclust.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/inspector_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/inspector_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/cpk_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./construct_cbeta.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./log.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./log.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./simulation.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vec.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./density_slice.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_mae_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/connector_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./clash_score.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_mmcif_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_path.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_path.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./modeller.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/share/icons/refresh.png /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./rule_based.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/manipulator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vec2.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec2.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./sequence_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./log_sink.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./log_sink.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/debug_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/pymod/stereo_data.json /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/share/openstructure/stereo_data.json cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./local_align.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/map_level_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/map_level_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./dft.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./dft.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./ialign.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./ialign.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/dihedral.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./minimal_compound_lib.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./trajectory_analysis.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/tool_options_win.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./profile.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./profile.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_set.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_set.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vec3.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec3.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./fft.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fft.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./observer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./aligned_region.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/simple_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./mmseqs2.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./mmseqs2.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/entity_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh [ 0%] Built target scene_icons [ 0%] Built target ost_mol_alg_pymod cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_visitor.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/sline_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./structure_analysis.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/bindings/pymod/./dockq.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/bindings/./dockq.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./aligned_column.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./compound_lib_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./state_extractor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/pdb_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/mouse_event.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/entity_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./fftw_helper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vec4.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec4.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/remote.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/remote.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./dyn_cast.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./dyn_cast.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/trace_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./aligned_column_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/tools/map_tool.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/fragment_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset_editor_list_model.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset_editor_list_model.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./system_creator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./stdint.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/conop/src/./ring_finder.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./ring_finder.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vecmat_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./info_verbose_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_pdb_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./consistency_checks.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./fill.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fill.hh [ 0%] Built target ost_bindings_pymod cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/pdb_writer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/line_trace_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vecmat2_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/fragment_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./item_type.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./invalid_sequence.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./topology_creator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset_editor_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset_editor_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./pdbize.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./semiglobal_align.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./stdint_msc.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint_msc.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./filter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_algorithm.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh [ 0%] Built target ost_conop_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./index.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./index.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./views_from_sequences.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/query_ast.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/backbone_trace.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./geom_info_conversion.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vecmat3_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./fourier_filters.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/entity_io_sdf_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./sequence_identity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset_info_handler.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset_info_handler.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./adjacency_bitmap.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./range.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./range.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/base_row.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/index.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/index.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./topology.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./topology.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/base/src/./profile_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./profile_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/entity_detail.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./sequence_similarity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/query_ast_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset_list_model.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset_list_model.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/background_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./consistency_checks.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/info/src/./item_type_cast.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type_cast.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/sdf_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vecmat4_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./contact_overlap.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/conservation_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/sdf_writer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/preset_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/preset_widget.py make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/type_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./units.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./units.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/entity_renderer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./subst_weight_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/query_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/mm/src/./steep.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./steep.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./circular_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./gaussian.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh [ 0%] Built target ost_seq_headers [ 0%] Built target ost_info_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./variance_map.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./domain_find.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/save_entity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/query_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./message.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./message.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/trace_renderer_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./gaussian_laplacian.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/image_state/value_holder.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./constants.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./constants.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/render_mode_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/render_mode_widget.py [ 0%] Built target ost_mol_mm_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/render_op.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/render_op.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./similarity_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/secstr_row.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/connect_renderer_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./highest_peak_search_3d.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/load_entity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./platform.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./platform.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./algorithm.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./algorithm.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/residue_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./histogram.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./histogram.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/render_options_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/render_options_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./string_ref.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./string_ref.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite2.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/residue_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/mapped_property.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./accessibility.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/surface_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./circle_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./circle_mask.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/surface_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/entity_renderer_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/scene_observer_impl.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/scene_observer_impl.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./composite_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./sec_struct.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./pod_vector.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./pod_vector.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/load_surface.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite3.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./line_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/tabulated_trig.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/surface_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/surface_io_msms_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./local_sigma_threshold.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./nonstandard.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./data_algorithm.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/scene_selection_helper.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/scene_selection_helper.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./fixed_string.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./fixed_string.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/seq/alg/src/./hmm_score.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite2_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./tri_matrix.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./tri_matrix.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/torsion_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./mask_image.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/pdb_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/simple_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/simple_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/impl/fast_spheres.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./data_observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_observer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./molck.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./molck.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 0%] Built target ost_seq_alg_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/sdf_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_str.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/sline_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/sline_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./boost_filesystem_helper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./find_membrane.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./data_types.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_types.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./composite3_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/impl/torsion_impl_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./negate.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_model.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/toolbar_options_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/toolbar_options_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/mmcif_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/line_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./normalizer_factory.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/base/src/./paged_array.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/./paged_array.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_row.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./data.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/alg/src/./entity_to_density.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./aligned_cuboid.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./atom_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/stereochemical_params_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./vec_mat_predicates.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/custom_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./atom_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./debug.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./debug.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/trace_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/trace_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./norm.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm.hh [ 0%] Built target ost_base_headers [ 0%] Built target ost_mol_alg_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./dllexport.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./dllexport.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./atom_view.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/mol/omf.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/omf.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./quat.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./quat.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/tube_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/tube_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/cpk_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./normalizer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./transform.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./transform.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/load_map.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/load_map.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./norm_linear.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/uniform_color_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/uniform_color_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./bond_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./extent_iterator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_iterator.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/simple_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/sline_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/visibility_op.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/visibility_op.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./norm_log.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./point_cloud.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_df3_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./bond_table.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_table.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/tick_painter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./extent_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/line_trace_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/line_trace_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./norm_od.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/geom/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/image_format.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/image_format.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./extent.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chain_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/title_row.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/line_trace_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/wireframe_widget.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/wireframe_widget.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_factory.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_factory.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./power_spectrum.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_dx_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chain_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/cartoon_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh [ 0%] Built target ost_geom_headers make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_spi_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./randomize.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./randomize.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chain_view.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/pymod/scene/query_editor.py /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib/python3.11/dist-packages//ost/gui/scene/query_editor.py cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/render_options/trace_render_options.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/base_view_object.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/geom/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color=" cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_situs_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./smooth_mask_image.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chain_type.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_handle_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 0%] Built target ost_gui_scene_pymod cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/by_element_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./stat.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chem_class.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_class.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/main_thread_runner.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o -MF CMakeFiles/ost_geom.dir/mat3.cc.o.d -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/mat3.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -MF CMakeFiles/ost_geom.dir/mat2.cc.o.d -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/mat2.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o -MF CMakeFiles/ost_geom.dir/mat4.cc.o.d -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/mat4.cc [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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-I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/vecmat2_op.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG 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-I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o -MF CMakeFiles/ost_geom.dir/composite2_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/composite2_op.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat 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CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/quat.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/transform.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o.d -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/aligned_cuboid.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/src/point_cloud.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_mrc_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./chem_type.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_type.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/by_chain_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/output_redirector.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./stat_accumulator.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_dat_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/uniform_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./stat_min_max.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./coord_group.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_group.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/completer_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_list.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_list.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/dir_model.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_ipl_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./threshold.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./coord_source.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_state_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/gradient_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./in_mem_coord_source.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_jpk_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image_state.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/entity_view_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/gutter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./transcendentals.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./transform.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./image.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_nanoscope_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/path_completer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./coord_frame.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./transform_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_png_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./inverted_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_context_parser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./editor_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./map.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./map.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_dm3_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./alg_transform.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/color_ops/map_handle_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_completer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./editor_type_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/map_io_tiff_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./render_pass.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask_base_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./alg_mirror.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_shell.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./mol.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./mol.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./alg_shift.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./bitmap_io.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/tiff_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/tiff_util.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_shell_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./collada_exporter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/img/jpk_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./discrete_shrink.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_shell_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./transformation_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/sequence_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./color.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./color.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_tokenizer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./transformations.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/fasta_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./entity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_observer_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/pir_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./fractional_shift.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/text_logger.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./entity_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/promod_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_interpreter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gl_helper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_property_mapper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./normalizer_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/profile_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./normalizer_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_view.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./polar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_interpreter_worker.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./line_average.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/hhm_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./null_data.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./null_data.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./entity_visitor_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/shell_history.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/alg/src/./rscrosscorr.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./observable.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./observable.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/pssm_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/state_machine.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./handle_type_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_node_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./paste_impl.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./paste_impl.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/clustal_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh [ 1%] Built target ost_img_alg_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_node_visitor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./peak.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./peak.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/load.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/load.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./ics_editor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/state.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_object_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./not_connected_error.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./phase.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./phase.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/transition.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/seq/save.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/save.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./property_id.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./property_id.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/python_shell/transition_guard.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./physical_units.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./physical_units.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./binary_data_sink.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_object.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./pixel_sampling.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/button_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./query.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./io_manager.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_manager.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_object_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_prim.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/drop_box.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./binary_data_source.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_source.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./point_list.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point_list.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./query_error.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_error.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./symmetry_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./query_state.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_state.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/panel_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./point.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gfx_test_object.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./polygon_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/panel_manager.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./residue_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./container_serialization.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./swap_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./swap_util.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/bottom_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./progress.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./progress.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./residue_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./glwin_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./io_utils.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_utils.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./input.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./input.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./residue_prop.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./size.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./size.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/button_box.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_box.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./io_exception.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_exception.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./prim_list.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./prim_list.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./residue_view.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./spherical_mask.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./spherical_mask.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/event_button.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/event_button.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./convert.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./convert.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./sec_structure.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./scene.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/panel_widget_container.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./util.cc /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/panel_bar_widget_holder.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./converting_streams.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./converting_streams.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./spatial_organizer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./selection.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./selection.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./surface.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./formatted_line.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./formatted_line.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./value_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./value_util.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./surface.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./surface.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/side_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./vecmat.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./vecmat.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/splitter_panel_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./surface_builder.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/chemdict_parser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./texture.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./texture.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./builder.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./builder.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/star_parser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./star_parser.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/panels/tabbed_panel_bar.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./vertex_array.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/img/base/src/./mask_info_convert.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/mmcif_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./surface_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_handle.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./vertex_array_helper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/context_menu.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh [ 1%] Built target ost_img_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/current_selection_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./surface_prop.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/mmcif_info.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_info.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./scene_observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/custom_part_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./torsion_handle.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gl_include.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_include.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/io_profile.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_profile.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/entity_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/dcd_io.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./dcd_io.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./glext_include.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glext_include.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./transfer_connectivity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./query_view_wrapper.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./render_mode.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_mode.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/entity_part_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_crd_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./material.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./material.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/gfx_scene_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./view_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_pqr_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/label_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_mae_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./view_type_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gradient.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./view_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/root_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gradient_manager.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./xcs_editor.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/render_mode_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./bounding_box.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bounding_box.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./primitives.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./primitives.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/pdb_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_reader.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/render_modes_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_pdb_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./transform.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transform.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/scene_node.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./povray_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/mol/base/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/scene_win.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/pdb_writer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_writer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./povray.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./exporter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/entity_io_sdf_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/scene_win/scene_win_model.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh [ 1%] Built target ost_mol_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/sdf_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./exporter_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/messages/message_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/messages/message_box_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./gost_exporter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/sdf_writer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/save_entity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save_entity.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/messages/log_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/argand.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/load_entity.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_entity.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./map_iso.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/surface_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/data_viewer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./map_slab.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_slab.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/load_surface.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_surface.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/data_viewer_panel.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gfx/src/./map_iso_prop.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/surface_io_msms_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh [ 1%] Built target ost_gfx_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/draw_overlay.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/pdb_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_str.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/drawing_functions.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/sdf_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_str.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/fft_panel.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/mmcif_str.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_str.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/stereochemical_params_reader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/info_panel.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/img2qt.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./mol/omf.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./omf.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/sequence_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/mask_overlay.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/fasta_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/null_overlay.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/pir_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/promod_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_base_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/profile_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_manager.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/hhm_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/pssm_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/clustal_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/load.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/pointlist_overlay.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./seq/save.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/load_map.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_map.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_df3_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/strategies.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/strategies_fw.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/image_format.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./image_format.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_dx_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/data_viewer/viewer_normalizer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_spi_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./file_browser.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_browser.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./file_type_dialog.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_situs_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./file_viewer.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_viewer.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./gl_canvas.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_mrc_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./gl_win.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_win.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_dat_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh In file included from /srv/build/openstructure-2.5.0/modules/geom/src/composite2.hh:27, from /srv/build/openstructure-2.5.0/modules/geom/src/composite2.cc:23: /srv/build/openstructure-2.5.0/modules/geom/src/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /srv/build/openstructure-2.5.0/modules/geom/src/def.hh:26, from /srv/build/openstructure-2.5.0/modules/geom/src/composite2.hh:22: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/modules/geom/src/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./scene_menu.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_ipl_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_jpk_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./gosty_app.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gosty_app.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./admin.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./admin.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_nanoscope_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./module_config.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./module_config.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_png_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./main.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_dm3_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/map_io_tiff_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./main_area.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_area.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./perspective.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./perspective.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/tiff_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./scene_selection.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_selection.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/io/src/./img/jpk_util.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/io/./jpk_util.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./main_window.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_window.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 1%] Built target ost_io_headers cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./dock_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./dock_widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./thin_splitter.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./widget.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./widget_geom_handler.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./widget_pool.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_pool.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./widget_registry.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_registry.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./widget_state_saver.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /srv/build/openstructure-2.5.0/modules/gui/src/./file_loader.hh /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_loader.hh make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 1%] Built target ost_gui_headers In file included from /srv/build/openstructure-2.5.0/modules/geom/src/composite2.hh:27, from /srv/build/openstructure-2.5.0/modules/geom/src/composite2_op.hh:24, from /srv/build/openstructure-2.5.0/modules/geom/src/composite2_op.cc:24: /srv/build/openstructure-2.5.0/modules/geom/src/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /srv/build/openstructure-2.5.0/modules/geom/src/composite2_op.cc:19: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/modules/geom/src/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/modules/geom/src/quat.cc: In function ‘geom::Quat geom::{anonymous}::extract_from_rotmat(const geom::Mat3&)’: /srv/build/openstructure-2.5.0/modules/geom/src/quat.cc:185:41: note: parameter passing for argument of type ‘geom::Quat’ when C++17 is enabled changed to match C++14 ]8;;https://gcc.gnu.org/gcc-10/changes.html#empty_basein GCC 10.1]8;; 185 | Quat extract_from_rotmat(const Mat3& rot) | ^ /srv/build/openstructure-2.5.0/modules/geom/src/composite3.cc: In member function ‘geom::Quat geom::Rotation3::GetQuat() const’: /srv/build/openstructure-2.5.0/modules/geom/src/composite3.cc:218:27: note: parameter passing for argument of type ‘geom::Quat’ when C++17 is enabled changed to match C++14 ]8;;https://gcc.gnu.org/gcc-10/changes.html#empty_basein GCC 10.1]8;; 218 | Quat Rotation3::GetQuat() const | ^~~~~ [ 1%] Linking CXX shared library ../../../stage/lib/libost_geom.so cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.5 -o ../../../stage/lib/libost_geom.so.2.5.0 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o -L/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.5.0 ../../../stage/lib/libost_geom.so.2.5 ../../../stage/lib/libost_geom.so make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 1%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/geom/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/units.cc.o [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/message.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o [ 1%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o [ 1%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o [ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o [ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log.cc.o -MF CMakeFiles/ost_base.dir/log.cc.o.d -o CMakeFiles/ost_base.dir/log.cc.o -c /srv/build/openstructure-2.5.0/modules/base/src/log.cc [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.11 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec2.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec2.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o -MF CMakeFiles/ost_base.dir/generic_property.cc.o.d -o CMakeFiles/ost_base.dir/generic_property.cc.o -c /srv/build/openstructure-2.5.0/modules/base/src/generic_property.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.11 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vecmat2_op.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o -MF CMakeFiles/ost_base.dir/log_sink.cc.o.d -o CMakeFiles/ost_base.dir/log_sink.cc.o -c /srv/build/openstructure-2.5.0/modules/base/src/log_sink.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.11 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec3.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o -MF CMakeFiles/ost_base.dir/profile.cc.o.d -o CMakeFiles/ost_base.dir/profile.cc.o -c /srv/build/openstructure-2.5.0/modules/base/src/profile.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.11 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vecmat3_op.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/units.cc.o -MF CMakeFiles/ost_base.dir/units.cc.o.d -o CMakeFiles/ost_base.dir/units.cc.o -c /srv/build/openstructure-2.5.0/modules/base/src/units.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.11 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec4.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec4.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o -MF CMakeFiles/ost_base.dir/string_ref.cc.o.d -o CMakeFiles/ost_base.dir/string_ref.cc.o -c /srv/build/openstructure-2.5.0/modules/base/src/string_ref.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.11 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC 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-I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.11 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat2.cc.o -c /srv/build/openstructure-2.5.0/modules/geom/pymod/export_mat2.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. 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target ost_base make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/openstructure-2.5.0 /srv/build/openstructure-2.5.0/modules/info/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build make[3]: Entering directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o [ 6%] 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-DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o -MF CMakeFiles/ost_info.dir/info_impl.cc.o.d -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_impl.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o -MF CMakeFiles/ost_info.dir/info_handle.cc.o.d -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_handle.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o -MF CMakeFiles/ost_info.dir/info_group.cc.o.d -o CMakeFiles/ost_info.dir/info_group.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_group.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o -MF CMakeFiles/ost_info.dir/info_item.cc.o.d -o CMakeFiles/ost_info.dir/info_item.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_item.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o -MF CMakeFiles/ost_info.dir/info_path.cc.o.d -o CMakeFiles/ost_info.dir/info_path.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_path.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o -MF CMakeFiles/ost_info.dir/info_set.cc.o.d -o CMakeFiles/ost_info.dir/info_set.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_set.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_visitor.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -MF CMakeFiles/ost_info.dir/geom_info_conversion.cc.o.d -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/geom_info_conversion.cc cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /srv/build/openstructure-2.5.0/modules/info/src/info_verbose_visitor.cc c++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:135: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o] Error 1 make[3]: *** Waiting for unfinished jobs.... c++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:289: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o] Error 1 c++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:121: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o] Error 1 c++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:79: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o] Error 1 In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/info_group.hh:33, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/info.hh:32, from /srv/build/openstructure-2.5.0/modules/info/src/geom_info_conversion.cc:19: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/base.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/info_handle.hh:31, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/info/info.hh:31: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/info/src/info_group.hh:33, from /srv/build/openstructure-2.5.0/modules/info/src/info.hh:32, from /srv/build/openstructure-2.5.0/modules/info/src/info_group.cc:27: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/base.hh:22, from /srv/build/openstructure-2.5.0/modules/info/src/info_handle.hh:31, from /srv/build/openstructure-2.5.0/modules/info/src/info.hh:31: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ c++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:163: modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o] Error 1 In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/info/src/info_group.hh:33, from /srv/build/openstructure-2.5.0/modules/info/src/info.hh:32, from /srv/build/openstructure-2.5.0/modules/info/src/info_handle.cc:30: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /srv/build/openstructure-2.5.0/modules/info/src/info_handle.cc:27: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/info/src/info_group.hh:33, from /srv/build/openstructure-2.5.0/modules/info/src/info_verbose_visitor.cc:28: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /srv/build/openstructure-2.5.0/modules/info/src/info_verbose_visitor.cc:25: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_quat.cc:22: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_quat.cc:19: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite2.cc:22: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vecmat4_op.cc:23: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite2.cc:19: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vecmat4_op.cc:20: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/modules/geom/pymod/export_quat.cc: In function ‘geom::Quat normalize(const geom::Quat&)’: /srv/build/openstructure-2.5.0/modules/geom/pymod/export_quat.cc:24:42: note: parameter passing for argument of type ‘geom::Quat’ when C++17 is enabled changed to match C++14 ]8;;https://gcc.gnu.org/gcc-10/changes.html#empty_basein GCC 10.1]8;; 24 | geom::Quat normalize (const geom::Quat& q) | ^ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite3_op.cc:24: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite3_op.cc:21: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite2_op.cc:24: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_mat3.cc:23: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite2_op.cc:21: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_mat3.cc:19: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_mat2.cc:22: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_mat2.cc:19: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vecmat2_op.cc:22: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vecmat2_op.cc:19: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite3.cc:21: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_composite3.cc:19: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec3.cc:22: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/c++/13/math.h:36, from /usr/include/python3.11/pyport.h:218, from /usr/include/python3.11/Python.h:38, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /srv/build/openstructure-2.5.0/modules/geom/pymod/export_vec3.cc:19: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/info/src/info_group.hh:33, from /srv/build/openstructure-2.5.0/modules/info/src/info_set.hh:29, from /srv/build/openstructure-2.5.0/modules/info/src/info_set.cc:29: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /srv/build/openstructure-2.5.0/modules/info/src/info_set.cc:25: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/info/src/info_group.hh:33, from /srv/build/openstructure-2.5.0/modules/info/src/info.hh:32, from /srv/build/openstructure-2.5.0/modules/info/src/info_item.cc:31: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /srv/build/openstructure-2.5.0/modules/info/src/info_item.cc:27: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ c++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:205: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o] Error 1 In file included from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite2.hh:27, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/composite.hh:22, from /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/geom.hh:28, from /srv/build/openstructure-2.5.0/modules/info/src/info_impl.hh:41, from /srv/build/openstructure-2.5.0/modules/info/src/info_impl.cc:37: /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:25:41: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 25 | class const_circular_iter : public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /srv/build/openstructure-2.5.0/modules/info/src/info_impl.cc:27: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/include/ost/geom/circular_iterator.hh:100:35: warning: ‘template struct std::iterator’ is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 100 | class circular_iter : public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/boost/preprocessor/iteration/detail/iter/limits/forward1_256.hpp:14, from /usr/include/boost/preprocessor/iteration/detail/iter/forward1.hpp:1343, from /usr/include/boost/python/detail/invoke.hpp:61, from /usr/include/boost/python/detail/caller.hpp:16, from /usr/include/boost/python/object/function_handle.hpp:8, from /usr/include/boost/python/converter/arg_to_python.hpp:19, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22: /usr/include/boost/python/detail/invoke.hpp: In function ‘PyObject* boost::python::detail::invoke(invoke_tag_, const RC&, F&, TC&) [with RC = boost::python::to_python_value; F = geom::Quat (geom::Rotation3::*)() const; TC = boost::python::arg_from_python]’: /usr/include/boost/python/detail/invoke.hpp:86:25: note: parameter passing for argument of type ‘geom::Quat’ when C++17 is enabled changed to match C++14 ]8;;https://gcc.gnu.org/gcc-10/changes.html#empty_basein GCC 10.1]8;; 86 | return rc( (tc().*f)(BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, ac, () BOOST_PP_INTERCEPT)) ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:3648: modules/geom/pymod/CMakeFiles/_ost_geom.dir/all] Error 2 make[2]: *** Waiting for unfinished jobs.... [ 6%] Linking CXX shared library ../../../stage/lib/libost_info.so cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/srv/build/openstructure-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.5 -o ../../../stage/lib/libost_info.so.2.5.0 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -L/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.13 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.13 ../../../stage/lib/libost_base.so.2.5.0 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.13 ../../../stage/lib/libost_geom.so.2.5.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_system.so.1.83.0 cd /srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.5.0 ../../../stage/lib/libost_info.so.2.5 ../../../stage/lib/libost_info.so make[3]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' [ 6%] Built target ost_info make[2]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' make[1]: *** [Makefile:159: all] Error 2 make[1]: Leaving directory '/srv/build/openstructure-2.5.0/obj-aarch64-linux-gnu' dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j32 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:11: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 Command `dpkg-buildpackage --changes-option=-DDistribution=landing -B -mDebichem Team -eDebichem Team ` failed. Command debspawn build --no-buildlog --arch=arm64 --results-dir=/var/lib/lkspark/workspaces/cd1a4a85-ff13-49e9-848d-81c995288b8e --only=arch --maintainer=Debichem Team landing openstructure_2.5.0-3.dsc failed with error code 2