debspawn 0.6.3 on cumin at 2023-06-21 20:41:14 UTC+0000 dpkg-source: info: extracting spades in spades-3.15.5+dfsg dpkg-source: info: unpacking spades_3.15.5+dfsg.orig.tar.xz dpkg-source: info: unpacking spades_3.15.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0002_use_debian_packaged_python-joblib.patch dpkg-source: info: applying 0003_accept-system-bwa.patch dpkg-source: info: applying 0101_cmake_ignore_removed_python-yaml.patch dpkg-source: info: applying 0102_cmake_ignore_removed_python-joblib.patch dpkg-source: info: applying 0103_use-debian-packaged-bwa.patch dpkg-source: info: applying 0114_use_debian_provided_libs.patch dpkg-source: info: applying 0118_adjust_spades_home_again.patch dpkg-source: info: applying fix-bool-cast dpkg-source: info: applying python3.patch dpkg-source: info: applying yaml_load.patch dpkg-source: info: applying debuginfo.patch dpkg-source: info: applying debian_bwa_zlib.patch dpkg-source: info: applying workdir_for_test.patch dpkg-source: info: applying disable_local_convertutf.patch dpkg-source: info: applying fix-sigill-on-non-popcnt-cpus.patch dpkg-source: info: applying fix-privacy-breaches.patch dpkg-source: info: applying typos.patch ╔═══════════════════════╗ ║ Package build ║ ╚═══════════════════════╝ Package: spades Version: 3.15.5+dfsg-2 Distribution: landing Architecture: arm64 Free space in workspace: 84.3GiB ┌───────────────────────────────────────┐ │ Preparing container for build │ └───────────────────────────────────────┘ Get:1 https://repo.pureos.net/pureos landing InRelease [8717 B] Get:2 https://repo.pureos.net/pureos landing/main all Packages [3713 kB] Fetched 3722 kB in 3s (1382 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dpkg-dev libdpkg-perl 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/1960 kB of archives. After this operation, 1529 kB disk space will be freed. debconf: delaying package configuration, since apt-utils is not installed (Reading database ... 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Reading state information... build-essential is already the newest version (12.9). dpkg-dev is already the newest version (1.21.22pureos1). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. ┌───────────────────────────────────────────────┐ │ Installing package build-dependencies │ └───────────────────────────────────────────────┘ Note, using directory './' to get the build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdextrautils bwa clang-14 clang-format clang-format-14 clang-tidy clang-tidy-14 clang-tools clang-tools-14 cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libbam-dev libbamtools-dev libbamtools2.5.2 libbrotli1 libbsd0 libbwa-dev libbz2-dev libc++-14-dev libc++-dev libc++1-14 libc++abi1-14 libclang-common-14-dev libclang-cpp14 libclang1-14 libcurl3-gnutls libcurl3-nss libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libedit2 libelf1 libffi-dev libfile-stripnondeterminism-perl libgc1 libhts-dev libhts3 libhtscodecs2 libicu-dev libicu72 libjsoncpp25 libldap-2.5-0 libllvm14 liblzma-dev libmagic-mgc libmagic1 libmd0 libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libnspr4 libnss3 libobjc-12-dev libobjc4 libpfm4 libpipeline1 libproc2-0 libpsl5 libpython3-stdlib libpython3.11-stdlib libreadline8 librhash0 librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssw-dev libssw0 libsub-override-perl libtinfo-dev libtool libuchardet0 libunwind-14 libunwind-14-dev libuv1 libxml2 libxml2-dev libyaml-0-2 libz3-4 libz3-dev llvm llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools llvm-dev llvm-runtime lynx lynx-common m4 man-db media-types nss-plugin-pem po-debconf procps python3 python3-all python3-distutils python3-joblib python3-lib2to3 python3-pkg-resources python3-pygments python3-yaml python3.11 rake readline-common ruby ruby-asciidoctor ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration sensible-utils zlib1g-dev 0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 54.0 MB/157 MB of archives. After this operation, 863 MB of additional disk space will be used. Get:1 https://repo.pureos.net/pureos landing/main arm64 libobjc4 arm64 12.2.0-14 [38.8 kB] Get:2 https://repo.pureos.net/pureos landing/main arm64 libobjc-12-dev arm64 12.2.0-14 [165 kB] Get:3 https://repo.pureos.net/pureos landing/main all libclang-common-14-dev all 1:14.0.6-12 [890 kB] Get:4 https://repo.pureos.net/pureos landing/main arm64 llvm-14-linker-tools arm64 1:14.0.6-12 [1092 kB] Get:5 https://repo.pureos.net/pureos landing/main arm64 clang-14 arm64 1:14.0.6-12 [97.3 kB] Get:6 https://repo.pureos.net/pureos landing/main arm64 clang-format-14 arm64 1:14.0.6-12 [73.4 kB] Get:7 https://repo.pureos.net/pureos landing/main arm64 clang-format arm64 1:14.0-55.6 [5096 B] Get:8 https://repo.pureos.net/pureos landing/main arm64 clang-tools-14 arm64 1:14.0.6-12 [5750 kB] Get:9 https://repo.pureos.net/pureos landing/main arm64 clang-tidy-14 arm64 1:14.0.6-12 [1502 kB] Get:10 https://repo.pureos.net/pureos landing/main arm64 clang-tidy arm64 1:14.0-55.6 [4868 B] Get:11 https://repo.pureos.net/pureos landing/main arm64 clang-tools arm64 1:14.0-55.6 [4876 B] Get:12 https://repo.pureos.net/pureos landing/main arm64 libunwind-14 arm64 1:14.0.6-12 [42.9 kB] Get:13 https://repo.pureos.net/pureos landing/main arm64 libc++abi1-14 arm64 1:14.0.6-12 [82.2 kB] Get:14 https://repo.pureos.net/pureos landing/main arm64 libc++1-14 arm64 1:14.0.6-12 [258 kB] Get:15 https://repo.pureos.net/pureos landing/main arm64 libunwind-14-dev arm64 1:14.0.6-12 [59.8 kB] Get:16 https://repo.pureos.net/pureos landing/main arm64 libc++-14-dev arm64 1:14.0.6-12 [914 kB] Get:17 https://repo.pureos.net/pureos landing/main arm64 libc++-dev arm64 1:14.0-55.6 [4604 B] Get:18 https://repo.pureos.net/pureos landing/main arm64 nss-plugin-pem arm64 1.0.8+1-1 [50.6 kB] Get:19 https://repo.pureos.net/pureos landing/main arm64 libcurl3-nss arm64 7.88.1-10 [365 kB] Get:20 https://repo.pureos.net/pureos landing/main arm64 libtinfo-dev arm64 6.4-4 [924 B] Get:21 https://repo.pureos.net/pureos landing/main arm64 libz3-dev arm64 4.8.12-3.1 [90.6 kB] Get:22 https://repo.pureos.net/pureos landing/main arm64 llvm-14-runtime arm64 1:14.0.6-12 [428 kB] Get:23 https://repo.pureos.net/pureos landing/main arm64 llvm-runtime arm64 1:14.0-55.6 [4640 B] Get:24 https://repo.pureos.net/pureos landing/main arm64 llvm-14 arm64 1:14.0.6-12 [10.0 MB] Get:25 https://repo.pureos.net/pureos landing/main arm64 llvm arm64 1:14.0-55.6 [7020 B] Get:26 https://repo.pureos.net/pureos landing/main arm64 llvm-14-tools arm64 1:14.0.6-12 [382 kB] Get:27 https://repo.pureos.net/pureos landing/main arm64 llvm-14-dev arm64 1:14.0.6-12 [31.6 MB] Get:28 https://repo.pureos.net/pureos landing/main arm64 llvm-dev arm64 1:14.0-55.6 [4896 B] Fetched 54.0 MB in 5s (11.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package media-types. 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Setting up cmake (3.25.1-1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up llvm-14 (1:14.0.6-12) ... Setting up python3.11 (3.11.2-6) ... Setting up libhts3:arm64 (1.16+ds-3) ... Setting up clang-14 (1:14.0.6-12) ... Setting up libhts-dev:arm64 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up llvm (1:14.0-55.6) ... Setting up clang-format-14 (1:14.0.6-12) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up clang-format:arm64 (1:14.0-55.6) ... Setting up clang-tools-14 (1:14.0.6-12) ... Setting up python3-joblib (1.2.0-4) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up clang-tidy-14 (1:14.0.6-12) ... Setting up clang-tools:arm64 (1:14.0-55.6) ... Setting up llvm-14-tools (1:14.0.6-12) ... Setting up clang-tidy (1:14.0-55.6) ... Setting up llvm-14-dev (1:14.0.6-12) ... Setting up llvm-dev (1:14.0-55.6) ... Setting up rake (13.0.6-3) ... Setting up ruby3.1 (3.1.2-7) ... Setting up ruby-sdbm:arm64 (1.0.0-5+b1) ... Setting up libruby3.1:arm64 (3.1.2-7) ... Setting up libruby:arm64 (1:3.1) ... Setting up ruby (1:3.1) ... Setting up ruby-asciidoctor (2.0.18-2) ... Setting up asciidoctor (2.0.18-2) ... Setting up ruby-rubygems (3.3.15-2) ... Processing triggers for libc-bin (2.36-9) ... ┌───────────────┐ │ Build │ └───────────────┘ dpkg-buildpackage: info: source package spades dpkg-buildpackage: info: source version 3.15.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: host architecture arm64  dpkg-source --before-build .  debian/rules clean dh clean --with python3 --sourcedirectory=assembler/src --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/srv/build/spades-3.15.5+dfsg' dh_auto_clean find . -name "*.pyc" -delete rm -rf /srv/build/spades-3.15.5+dfsg/debian/man_src/*.html /srv/build/spades-3.15.5+dfsg/debian/man_src/*.? rm -rf /srv/build/spades-3.15.5+dfsg/debian/man make[1]: Leaving directory '/srv/build/spades-3.15.5+dfsg' dh_autoreconf_clean -O--sourcedirectory=assembler/src -O--buildsystem=cmake debian/rules override_dh_clean make[1]: Entering directory '/srv/build/spades-3.15.5+dfsg' dh_clean -X.orig make[1]: Leaving directory '/srv/build/spades-3.15.5+dfsg'  debian/rules binary-arch dh binary-arch --with python3 --sourcedirectory=assembler/src --buildsystem=cmake dh_update_autotools_config -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake dh_autoreconf -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/srv/build/spades-3.15.5+dfsg' dh_auto_configure -- -DBoost_NO_BOOST_CMAKE=TRUE cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBoost_NO_BOOST_CMAKE=TRUE ../assembler/src CMake Warning (dev) in CMakeLists.txt: No project() command is present. The top-level CMakeLists.txt file must contain a literal, direct call to the project() command. Add a line of code such as project(ProjectName) near the top of the file, but after cmake_minimum_required(). CMake is pretending there is a "project(Project)" command on the first line. This warning is for project developers. Use -Wno-dev to suppress it.  -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.13") -- Found BZip2: /usr/lib/aarch64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Looking for wsyncup in /usr/lib/aarch64-linux-gnu/libncurses.so -- Looking for wsyncup in /usr/lib/aarch64-linux-gnu/libncurses.so - found -- Looking for wsyncup in /usr/lib/aarch64-linux-gnu/libcurses.so -- Looking for wsyncup in /usr/lib/aarch64-linux-gnu/libcurses.so - found -- Found Boost: /srv/build/spades-3.15.5+dfsg/assembler/ext/include (found version "1.63.0") Making Release Configuration... Building SPAdes from N/A, sha: N/A -- Override standard malloc (MI_OVERRIDE=ON) -- Enable abort() calls on memory allocation failure (MI_XMALLOC=ON) -- Enable printing of error and warning messages by default (MI_SHOW_ERRORS=ON) -- Use the C++ compiler to compile (MI_USE_CXX=ON) -- -- Library base name: mimalloc-none -- Build type : none -- Compiler : /usr/bin/c++ -- Install directory: /usr/lib/mimalloc-1.6 -- Build targets : object -- -- Looking for open -- Looking for open - found -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for signal.h -- Looking for signal.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for cxxabi.h -- Looking for cxxabi.h - not found -- Looking for dlfcn.h -- Looking for dlfcn.h - found -- Looking for mach/mach.h -- Looking for mach/mach.h - not found -- Looking for link.h -- Looking for link.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for sys/mman.h -- Looking for sys/mman.h - found -- Looking for fcntl.h -- Looking for fcntl.h - found -- Looking for malloc/malloc.h -- Looking for malloc/malloc.h - not found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for sys/resource.h -- Looking for sys/resource.h - found -- Looking for backtrace -- Looking for backtrace - found -- backtrace facility detected in default set of libraries -- Found Backtrace: /usr/include -- Looking for futimens -- Looking for futimens - found -- Looking for futimes -- Looking for futimes - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for getpagesize -- Looking for getpagesize - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for mallinfo -- Looking for mallinfo - found -- Looking for mallctl -- Looking for mallctl - not found -- Looking for malloc_zone_statistics -- Looking for malloc_zone_statistics - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Looking for pthread_getspecific in pthread -- Looking for pthread_getspecific in pthread - found -- Looking for pthread_rwlock_init in pthread -- Looking for pthread_rwlock_init in pthread - found -- Looking for pthread_mutex_lock in pthread -- Looking for pthread_mutex_lock in pthread - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test HAVE_FFI_CALL -- Performing Test HAVE_FFI_CALL - Success -- Found FFI: /usr/lib/aarch64-linux-gnu/libffi.so -- Performing Test Terminfo_LINKABLE -- Performing Test Terminfo_LINKABLE - Success -- Found Terminfo: /usr/lib/aarch64-linux-gnu/libtinfo.so -- Found LibXml2: /usr/lib/aarch64-linux-gnu/libxml2.so (found version "2.9.14") -- Looking for include file endian.h -- Looking for include file endian.h - found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file stdint.h -- Looking for include file stdint.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/param.h -- Looking for include file sys/param.h - found -- Looking for include file sys/sysctl.h -- Looking for include file sys/sysctl.h - not found -- Looking for include file emmintrin.h -- Looking for include file emmintrin.h - not found -- Looking for include file pmmintrin.h -- Looking for include file pmmintrin.h - not found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for chmod -- Looking for chmod - found -- Looking for fseeko -- Looking for fseeko - found -- Looking for fstat -- Looking for fstat - found -- Looking for getcwd -- Looking for getcwd - found -- Looking for getpid -- Looking for getpid - found -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for popen -- Looking for popen - found -- Looking for putenv -- Looking for putenv - found -- Looking for stat -- Looking for stat - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for sysctl -- Looking for sysctl - not found -- Looking for times -- Looking for times - found -- Looking for erfc -- Looking for erfc - not found  CMake Deprecation Warning at /srv/build/spades-3.15.5+dfsg/assembler/ext/src/googletest/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions.  CMake Deprecation Warning at /srv/build/spades-3.15.5+dfsg/assembler/ext/src/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions.  -- Found PythonInterp: /usr/bin/python3 (found version "3.11.2") CMake Deprecation Warning at projects/mts/CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions.  -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED  -- Build files have been written to: /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/srv/build/spades-3.15.5+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/srv/build/spades-3.15.5+dfsg' dh_auto_build -- all debruijn_test include_test cd obj-aarch64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" all debruijn_test include_test VERBOSE=1 make[2]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/srv/build/spades-3.15.5+dfsg/assembler/src -B/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/CMakeFiles /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/depend make -f ext/bamtools/api/CMakeFiles/BamTools.dir/build.make ext/bamtools/api/CMakeFiles/BamTools.dir/depend make -f ext/cppformat/CMakeFiles/format.dir/build.make ext/cppformat/CMakeFiles/format.dir/depend make -f ext/getopt_pp/CMakeFiles/getopt_pp.dir/build.make ext/getopt_pp/CMakeFiles/getopt_pp.dir/depend make -f ext/llvm/CMakeFiles/llvm-support.dir/build.make ext/llvm/CMakeFiles/llvm-support.dir/depend make -f ext/gqf/CMakeFiles/gqf.dir/build.make ext/gqf/CMakeFiles/gqf.dir/depend make -f ext/edlib/CMakeFiles/edlib.dir/build.make ext/edlib/CMakeFiles/edlib.dir/depend make -f ext/gfa1/CMakeFiles/gfa1.dir/build.make ext/gfa1/CMakeFiles/gfa1.dir/depend make -f ext/easel/CMakeFiles/easel.dir/build.make ext/easel/CMakeFiles/easel.dir/depend make -f ext/googletest/googletest/CMakeFiles/gtest.dir/build.make ext/googletest/googletest/CMakeFiles/gtest.dir/depend make -f common/modules/coverage_model/CMakeFiles/coverage_model.dir/build.make common/modules/coverage_model/CMakeFiles/coverage_model.dir/depend make -f ext/mimalloc/CMakeFiles/mimalloc-obj.dir/build.make ext/mimalloc/CMakeFiles/mimalloc-obj.dir/depend make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/ConsensusCore /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/ext/src/cppformat /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/cppformat /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/cppformat/CMakeFiles/format.dir/DependInfo.cmake --color= make -f common/io/binary/CMakeFiles/binary_io.dir/build.make common/io/binary/CMakeFiles/binary_io.dir/depend make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/ext/src/getopt_pp /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/getopt_pp /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/getopt_pp/CMakeFiles/getopt_pp.dir/DependInfo.cmake --color= make -f common/utils/CMakeFiles/version.dir/build.make common/utils/CMakeFiles/version.dir/depend make -f common/paired_info/CMakeFiles/paired_info.dir/build.make common/paired_info/CMakeFiles/paired_info.dir/depend make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f projects/spaligner/CMakeFiles/mapping_printer.dir/build.make projects/spaligner/CMakeFiles/mapping_printer.dir/depend cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/gqf /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/gqf/CMakeFiles/gqf.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/ext/src/edlib /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/edlib /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/edlib/CMakeFiles/edlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gfa1 /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/gfa1 /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/gfa1/CMakeFiles/gfa1.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/ext/src/googletest/googletest /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/googletest/googletest /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm/CMakeFiles/llvm-support.dir/DependInfo.cmake --color= cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/src/common/modules/coverage_model /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/modules/coverage_model /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/modules/coverage_model/CMakeFiles/coverage_model.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/mimalloc /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/mimalloc/CMakeFiles/mimalloc-obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/io/binary /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/io/binary/CMakeFiles/binary_io.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/src/common/utils /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils 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/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/CMakeFiles/easel.dir/DependInfo.cmake --color= make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/src/projects/spaligner /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/projects/spaligner /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/projects/spaligner/CMakeFiles/mapping_printer.dir/DependInfo.cmake --color= make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f ext/edlib/CMakeFiles/edlib.dir/build.make ext/edlib/CMakeFiles/edlib.dir/build make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f ext/cppformat/CMakeFiles/format.dir/build.make ext/cppformat/CMakeFiles/format.dir/build make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build make -f ext/getopt_pp/CMakeFiles/getopt_pp.dir/build.make ext/getopt_pp/CMakeFiles/getopt_pp.dir/build make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f ext/gqf/CMakeFiles/gqf.dir/build.make ext/gqf/CMakeFiles/gqf.dir/build make -f ext/bamtools/api/CMakeFiles/BamTools.dir/build.make ext/bamtools/api/CMakeFiles/BamTools.dir/build make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f 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'/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f common/io/binary/CMakeFiles/binary_io.dir/build.make common/io/binary/CMakeFiles/binary_io.dir/build make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f common/utils/CMakeFiles/version.dir/build.make common/utils/CMakeFiles/version.dir/build make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f common/paired_info/CMakeFiles/paired_info.dir/build.make common/paired_info/CMakeFiles/paired_info.dir/build make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f ext/easel/CMakeFiles/easel.dir/build.make ext/easel/CMakeFiles/easel.dir/build make -f projects/spaligner/CMakeFiles/mapping_printer.dir/build.make projects/spaligner/CMakeFiles/mapping_printer.dir/build make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object ext/edlib/CMakeFiles/edlib.dir/edlib.cpp.o [ 1%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o [ 1%] Building CXX object ext/getopt_pp/CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o [ 1%] Building CXX object ext/cppformat/CMakeFiles/format.dir/format.cc.o [ 1%] Building C object ext/gqf/CMakeFiles/gqf.dir/gqf.c.o [ 1%] Building C object ext/gfa1/CMakeFiles/gfa1.dir/gfa.c.o [ 3%] Building CXX object common/modules/coverage_model/CMakeFiles/coverage_model.dir/kmer_coverage_model.cpp.o [ 3%] Building CXX object common/io/binary/CMakeFiles/binary_io.dir/graph_pack.cpp.o [ 3%] Building CXX object ext/mimalloc/CMakeFiles/mimalloc-obj.dir/src/static.c.o [ 3%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o [ 3%] Building CXX object common/utils/CMakeFiles/version.dir/version.cpp.o [ 3%] Building CXX object ext/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/edlib && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/edlib/CMakeFiles/edlib.dir/edlib.cpp.o -MF CMakeFiles/edlib.dir/edlib.cpp.o.d -o CMakeFiles/edlib.dir/edlib.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/edlib/edlib.cpp [ 3%] Building CXX object common/paired_info/CMakeFiles/paired_info.dir/distance_estimation.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/cppformat && /usr/bin/c++ -DFMT_USE_FILE_DESCRIPTORS=1 -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/cppformat -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -Wextra -pedantic -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/cppformat/CMakeFiles/format.dir/format.cc.o -MF CMakeFiles/format.dir/format.cc.o.d -o CMakeFiles/format.dir/format.cc.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/cppformat/format.cc cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/gqf && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/gqf/CMakeFiles/gqf.dir/gqf.c.o -MF CMakeFiles/gqf.dir/gqf.c.o.d -o CMakeFiles/gqf.dir/gqf.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c [ 3%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/APFloat.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o -MF CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o.d -o CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/AffineAlignment.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/getopt_pp && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/getopt_pp/CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o -MF CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o.d -o CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/getopt_pp/getopt_pp.cpp [ 3%] Building CXX object projects/spaligner/CMakeFiles/mapping_printer.dir/mapping_printer.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/gfa1 && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/gfa1/CMakeFiles/gfa1.dir/gfa.c.o -MF CMakeFiles/gfa1.dir/gfa.c.o.d -o CMakeFiles/gfa1.dir/gfa.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gfa1/gfa.c cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/mimalloc && /usr/bin/c++ -DMI_MALLOC_OVERRIDE -DMI_MALLOC_OVERRIDE_GLIBC -DMI_SHOW_ERRORS=1 -DMI_XMALLOC=1 -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -Wno-deprecated -O2 -Wall -Wextra -Wno-unknown-pragmas -fvisibility=hidden -Wno-invalid-memory-model -ftls-model=initial-exec -std=gnu++17 -MD -MT ext/mimalloc/CMakeFiles/mimalloc-obj.dir/src/static.c.o -MF CMakeFiles/mimalloc-obj.dir/src/static.c.o.dcd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/io/binary && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/io/binary/CMakeFiles/binary_io.dir/graph_pack.cpp.o -MF CMakeFiles/binary_io.dir/graph_pack.cpp.o.d -o CMakeFiles/binary_io.dir/graph_pack.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/gra -o CMakeFiles/mimalloc-obj.dir/src/static.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/static.c ph_pack.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o -MF CMakeFiles/BamTools.dir/BamAlignment.cpp.o.d -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/BamAlignment.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/modules/coverage_model && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/modules/coverage_model/CMakeFiles/coverage_model.dir/kmer_coverage_model.cpp.o -MF CMakeFiles/coverage_model.dir/kmer_coverage_model.cpp.o.d -o CMakeFiles/coverage_model.dir/kmer_coverage_model.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/modules/coverage_model/kmer_coverage_model.cpp [ 3%] Building C object ext/easel/CMakeFiles/easel.dir/easel.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/utils/CMakeFiles/version.dir/version.cpp.o -MF CMakeFiles/version.dir/version.cpp.o.d -o CMakeFiles/version.dir/version.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/utils/version.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/googletest/googletest && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/googletest/googletest/include -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/googletest/googletest -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated -O2 -std=c++14 -MD -MT ext/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/googletest/googletest/src/gtest-all.cc cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/paired_info && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/paired_info/CMakeFiles/paired_info.dir/distance_estimation.cpp.o -MF CMakeFiles/paired_info.dir/distance_estimation.cpp.o.d -o CMakeFiles/paired_info.dir/distance_estimation.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/paired_info/distance_estimation.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/APFloat.cpp.o -MF CMakeFiles/llvm-support.dir/APFloat.cpp.o.d -o CMakeFiles/llvm-support.dir/APFloat.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/APFloat.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/projects/spaligner && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/src/projects/spaligner -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT projects/spaligner/CMakeFiles/mapping_printer.dir/mapping_printer.cpp.o -MF CMakeFiles/mapping_printer.dir/mapping_printer.cpp.o.d -o CMakeFiles/mapping_printer.dir/mapping_printer.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/projects/spaligner/mapping_printer.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/easel.c.o -MF CMakeFiles/easel.dir/easel.c.o.d -o CMakeFiles/easel.dir/easel.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/easel.c [ 4%] Linking CXX static library libversion.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c: In function 'qf_dump_block': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c:610:30: warning: format '%llx' expects argument of type 'long long unsigned int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=-Wformat=]8;;] 610 | printf("%02llx ", j); | ~~~~~^ ~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %02lx /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c: In function 'qf_dump': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c:641:20: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=-Wformat=]8;;] 641 | printf("%llu %llu %llu\n", | ~~~^ | | | long long unsigned int | %lu 642 | qf->metadata->nblocks, | ~~~~~~~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c:641:25: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=-Wformat=]8;;] 641 | printf("%llu %llu %llu\n", | ~~~^ | | | long long unsigned int | %lu 642 | qf->metadata->nblocks, 643 | qf->metadata->ndistinct_elts, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c:641:30: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=-Wformat=]8;;] 641 | printf("%llu %llu %llu\n", | ~~~^ | | | long long unsigned int | %lu ...... 644 | qf->metadata->nelts); | ~~~~~~~~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c: In function 'qf_deserialize': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c:1606:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] 1606 | fread(qf->metadata, sizeof(qfmetadata), 1, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c:1615:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] 1615 | fread(qf->blocks, qf->metadata->size, 1, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ar qc libversion.a CMakeFiles/version.dir/version.cpp.o /usr/bin/ranlib libversion.a make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target version [ 4%] Building C object ext/easel/CMakeFiles/easel.dir/esl_alphabet.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_alphabet.c.o -MF CMakeFiles/easel.dir/esl_alphabet.c.o.d -o CMakeFiles/easel.dir/esl_alphabet.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_alphabet.c In file included from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/index/edge_position_index.hpp:14, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/index/edge_info_updater.hpp:10, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/index/edge_multi_index.hpp:11, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/modules/alignment/pacbio/g_aligner.hpp:8, from /srv/build/spades-3.15.5+dfsg/assembler/src/projects/spaligner/mapping_printer.hpp:11, from /srv/build/spades-3.15.5+dfsg/assembler/src/projects/spaligner/mapping_printer.cpp:7: /srv/build/spades-3.15.5+dfsg/assembler/ext/include/folly/SmallLocks.h:46:3: error: #error "SmallLocks.h is currently x64-only." 46 | # error "SmallLocks.h is currently x64-only." | ^~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/index/edge_position_index.hpp:14, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/index/edge_info_updater.hpp:10, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/modules/alignment/edge_index.hpp:13, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/edge_index.hpp:10, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:11: /srv/build/spades-3.15.5+dfsg/assembler/ext/include/folly/SmallLocks.h:46:3: error: #error "SmallLocks.h is currently x64-only." 46 | # error "SmallLocks.h is currently x64-only." | ^~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/static.c:28: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/region.c: In function 'void _mi_mem_collect(mi_os_tld_t*)': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/region.c:466:15: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'mem_region_t' {aka 'struct mem_region_s'} with no trivial copy-assignment; use value-initialization instead []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wclass-memaccess-Wclass-memaccess]8;;] 466 | memset(®ions[i], 0, sizeof(mem_region_t)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/region.c:89:16: note: 'mem_region_t' {aka 'struct mem_region_s'} declared here 89 | typedef struct mem_region_s { | ^~~~~~~~~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/static.c:31: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/heap.c: In function 'mi_heap_t* mi_heap_new()': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/heap.c:196:9: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'mi_heap_t' {aka 'struct mi_heap_s'} with no trivial copy-assignment []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wclass-memaccess-Wclass-memaccess]8;;] 196 | memcpy(heap, &_mi_heap_empty, sizeof(mi_heap_t)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/include/mimalloc-internal.h:11, from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/static.c:17: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/include/mimalloc-types.h:340:8: note: 'mi_heap_t' {aka 'struct mi_heap_s'} declared here 340 | struct mi_heap_s { | ^~~~~~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc.c:15, from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/static.c:32: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c: At global scope: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:29:35: note: in expansion of macro 'MI_FORWARD' 29 | #define MI_FORWARD1(fun,x) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:71:42: note: in expansion of macro 'MI_FORWARD1' 71 | void* malloc(size_t size) MI_FORWARD1(mi_malloc, size); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:30:35: note: in expansion of macro 'MI_FORWARD' 30 | #define MI_FORWARD2(fun,x,y) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:72:42: note: in expansion of macro 'MI_FORWARD2' 72 | void* calloc(size_t size, size_t n) MI_FORWARD2(mi_calloc, size, n); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:30:35: note: in expansion of macro 'MI_FORWARD' 30 | #define MI_FORWARD2(fun,x,y) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:73:42: note: in expansion of macro 'MI_FORWARD2' 73 | void* realloc(void* p, size_t newsize) MI_FORWARD2(mi_realloc, p, newsize); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:29:35: note: in expansion of macro 'MI_FORWARD' 29 | #define MI_FORWARD1(fun,x) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:95:55: note: in expansion of macro 'MI_FORWARD1' 95 | void* operator new(std::size_t n) noexcept(false) MI_FORWARD1(mi_new,n); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:29:35: note: in expansion of macro 'MI_FORWARD' 29 | #define MI_FORWARD1(fun,x) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:96:55: note: in expansion of macro 'MI_FORWARD1' 96 | void* operator new[](std::size_t n) noexcept(false) MI_FORWARD1(mi_new,n); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:30:35: note: in expansion of macro 'MI_FORWARD' 30 | #define MI_FORWARD2(fun,x,y) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:167:42: note: in expansion of macro 'MI_FORWARD2' 167 | void* reallocf(void* p, size_t newsize) MI_FORWARD2(mi_reallocf,p,newsize); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:29:35: note: in expansion of macro 'MI_FORWARD' 29 | #define MI_FORWARD1(fun,x) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:168:42: note: in expansion of macro 'MI_FORWARD1' 168 | size_t malloc_size(const void* p) MI_FORWARD1(mi_usable_size,p); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:29:35: note: in expansion of macro 'MI_FORWARD' 29 | #define MI_FORWARD1(fun,x) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:170:42: note: in expansion of macro 'MI_FORWARD1' 170 | size_t malloc_usable_size(void *p) MI_FORWARD1(mi_usable_size,p); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:29:35: note: in expansion of macro 'MI_FORWARD' 29 | #define MI_FORWARD1(fun,x) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:194:53: note: in expansion of macro 'MI_FORWARD1' 194 | void* __libc_malloc(size_t size) MI_FORWARD1(mi_malloc,size); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:30:35: note: in expansion of macro 'MI_FORWARD' 30 | #define MI_FORWARD2(fun,x,y) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:195:53: note: in expansion of macro 'MI_FORWARD2' 195 | void* __libc_calloc(size_t count, size_t size) MI_FORWARD2(mi_calloc,count,size); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:25:101: warning: 'nodiscard' attribute directive ignored []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wattributes-Wattributes]8;;] 25 | #define MI_FORWARD(fun) __attribute__((alias(#fun), used, visibility("default"), copy(fun))) | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:30:35: note: in expansion of macro 'MI_FORWARD' 30 | #define MI_FORWARD2(fun,x,y) MI_FORWARD(fun) | ^~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/alloc-override.c:196:53: note: in expansion of macro 'MI_FORWARD2' 196 | void* __libc_realloc(void* p, size_t size) MI_FORWARD2(mi_realloc,p,size); | ^~~~~~~~~~~ [ 4%] Building C object ext/easel/CMakeFiles/easel.dir/esl_avx.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_avx.c.o -MF CMakeFiles/easel.dir/esl_avx.c.o.d -o CMakeFiles/easel.dir/esl_avx.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_avx.c In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/static.c:38: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/init.c: In function 'bool _mi_heap_init()': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/src/init.c:192:11: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'mi_heap_t' {aka 'struct mi_heap_s'} with no trivial copy-assignment []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wclass-memaccess-Wclass-memaccess]8;;] 192 | memcpy(heap, &_mi_heap_empty, sizeof(*heap)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/include/mimalloc-types.h:340:8: note: 'mi_heap_t' {aka 'struct mi_heap_s'} declared here 340 | struct mi_heap_s { | ^~~~~~~~~ [ 4%] Building C object ext/easel/CMakeFiles/easel.dir/esl_buffer.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_buffer.c.o -MF CMakeFiles/easel.dir/esl_buffer.c.o.d -o CMakeFiles/easel.dir/esl_buffer.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_buffer.c [ 5%] Building C object ext/easel/CMakeFiles/easel.dir/esl_cluster.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_cluster.c.o -MF CMakeFiles/easel.dir/esl_cluster.c.o.d -o CMakeFiles/easel.dir/esl_cluster.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_cluster.c [ 6%] Linking C static library libgqf.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/gqf && /usr/bin/cmake -P CMakeFiles/gqf.dir/cmake_clean_target.cmake [ 6%] Building C object ext/easel/CMakeFiles/easel.dir/esl_composition.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/gqf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gqf.dir/link.txt --verbose=1 cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_composition.c.o -MF CMakeFiles/easel.dir/esl_composition.c.o.d -o CMakeFiles/easel.dir/esl_composition.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_composition.c /usr/bin/ar qc libgqf.a CMakeFiles/gqf.dir/gqf.c.o /usr/bin/ranlib libgqf.a [ 6%] Building C object ext/easel/CMakeFiles/easel.dir/esl_dirichlet.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_dirichlet.c.o -MF CMakeFiles/easel.dir/esl_dirichlet.c.o.d -o CMakeFiles/easel.dir/esl_dirichlet.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_dirichlet.c make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 6%] Built target gqf [ 6%] Building C object ext/easel/CMakeFiles/easel.dir/esl_distance.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_distance.c.o -MF CMakeFiles/easel.dir/esl_distance.c.o.d -o CMakeFiles/easel.dir/esl_distance.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_distance.c [ 6%] Building C object ext/easel/CMakeFiles/easel.dir/esl_dmatrix.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_dmatrix.c.o -MF CMakeFiles/easel.dir/esl_dmatrix.c.o.d -o CMakeFiles/easel.dir/esl_dmatrix.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_dmatrix.c [ 6%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -MF CMakeFiles/BamTools.dir/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/BamMultiReader.cpp [ 7%] Building C object ext/easel/CMakeFiles/easel.dir/esl_dsqdata.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_dsqdata.c.o -MF CMakeFiles/easel.dir/esl_dsqdata.c.o.d -o CMakeFiles/easel.dir/esl_dsqdata.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_dsqdata.c [ 7%] Building C object ext/easel/CMakeFiles/easel.dir/esl_exponential.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_exponential.c.o -MF CMakeFiles/easel.dir/esl_exponential.c.o.d -o CMakeFiles/easel.dir/esl_exponential.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_exponential.c [ 7%] Linking C static library libgfa1.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/gfa1 && /usr/bin/cmake -P CMakeFiles/gfa1.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/gfa1 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gfa1.dir/link.txt --verbose=1 /usr/bin/ar qc libgfa1.a CMakeFiles/gfa1.dir/gfa.c.o /usr/bin/ranlib libgfa1.a [ 7%] Building C object ext/easel/CMakeFiles/easel.dir/esl_fileparser.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_fileparser.c.o -MF CMakeFiles/easel.dir/esl_fileparser.c.o.d -o CMakeFiles/easel.dir/esl_fileparser.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_fileparser.c [ 7%] Linking CXX static library libgetopt_pp.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/getopt_pp && /usr/bin/cmake -P CMakeFiles/getopt_pp.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/getopt_pp && /usr/bin/cmake -E cmake_link_script CMakeFiles/getopt_pp.dir/link.txt --verbose=1 make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 7%] Building C object ext/easel/CMakeFiles/easel.dir/esl_gamma.c.o [ 7%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Coverage.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_gamma.c.o -MF CMakeFiles/easel.dir/esl_gamma.c.o.d -o CMakeFiles/easel.dir/esl_gamma.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_gamma.c cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Coverage.cpp.o -MF CMakeFiles/ConsensusCore.dir/Coverage.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Coverage.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Coverage.cpp /usr/bin/ar qc libgetopt_pp.a CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o [ 7%] Built target gfa1 make -f common/io/graph/CMakeFiles/graphio.dir/build.make common/io/graph/CMakeFiles/graphio.dir/depend /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_fileparser.c: In function 'esl_fileparser_NextLine': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_fileparser.c:278:21: warning: comparison between pointer and zero character constant []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wpointer-compare-Wpointer-compare]8;;] 278 | while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; | ^~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_fileparser.c:278:14: note: did you mean to dereference the pointer? 278 | while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; | ^ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_fileparser.c: In function 'esl_fileparser_NextLinePeeked': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_fileparser.c:359:17: warning: comparison between pointer and zero character constant []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wpointer-compare-Wpointer-compare]8;;] 359 | while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; | ^~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_fileparser.c:359:10: note: did you mean to dereference the pointer? 359 | while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; | ^ make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/io/graph /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/io/graph/CMakeFiles/graphio.dir/DependInfo.cmake --color= make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f common/io/graph/CMakeFiles/graphio.dir/build.make common/io/graph/CMakeFiles/graphio.dir/build make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object common/io/graph/CMakeFiles/graphio.dir/gfa_reader.cpp.o /usr/bin/ranlib libgetopt_pp.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/io/graph && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/io/graph/CMakeFiles/graphio.dir/gfa_reader.cpp.o -MF CMakeFiles/graphio.dir/gfa_reader.cpp.o.d -o CMakeFiles/graphio.dir/gfa_reader.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph/gfa_reader.cpp make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 7%] Built target getopt_pp [ 7%] Building CXX object common/io/graph/CMakeFiles/graphio.dir/gfa_writer.cpp.o [ 7%] Building C object ext/easel/CMakeFiles/easel.dir/esl_gencode.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/io/graph && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/io/graph/CMakeFiles/graphio.dir/gfa_writer.cpp.o -MF CMakeFiles/graphio.dir/gfa_writer.cpp.o.d -o CMakeFiles/graphio.dir/gfa_writer.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph/gfa_writer.cpcd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_gencode.c.o -MF CMakeFiles/easel.dir/esl_gencode.c.o.d -o CMakeFiles/easel.dir/esl_gencode.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_gencode.c p [ 7%] Linking CXX static library libedlib.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/edlib && /usr/bin/cmake -P CMakeFiles/edlib.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/edlib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edlib.dir/link.txt --verbose=1 [ 7%] Building CXX object common/io/graph/CMakeFiles/graphio.dir/fastg_writer.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/io/graph && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/io/graph/CMakeFiles/graphio.dir/fastg_writer.cpp.o -MF CMakeFiles/graphio.dir/fastg_writer.cpp.o.d -o CMakeFiles/graphio.dir/fastg_writer.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph/fastg_writer.cpp /usr/bin/ar qc libedlib.a CMakeFiles/edlib.dir/edlib.cpp.o /usr/bin/ranlib libedlib.a make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 7%] Built target edlib make -f common/sequence/CMakeFiles/sequence.dir/build.make common/sequence/CMakeFiles/sequence.dir/depend make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/src/common/sequence /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/sequence /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/sequence/CMakeFiles/sequence.dir/DependInfo.cmake --color= [ 9%] Building C object ext/easel/CMakeFiles/easel.dir/esl_getopts.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_getopts.c.o -MF CMakeFiles/easel.dir/esl_getopts.c.o.d -o CMakeFiles/easel.dir/esl_getopts.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_getopts.c make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f common/sequence/CMakeFiles/sequence.dir/build.make common/sequence/CMakeFiles/sequence.dir/build make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 9%] Building CXX object common/sequence/CMakeFiles/sequence.dir/sequence_tools.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/sequence && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/sequence/CMakeFiles/sequence.dir/sequence_tools.cpp.o -MF CMakeFiles/sequence.dir/sequence_tools.cpp.o.d -o CMakeFiles/sequence.dir/sequence_tools.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/sequence/sequence_tools.cpp [ 9%] Building C object ext/easel/CMakeFiles/easel.dir/esl_gev.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_gev.c.o -MF CMakeFiles/easel.dir/esl_gev.c.o.d -o CMakeFiles/easel.dir/esl_gev.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_gev.c [ 9%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Mutation.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Mutation.cpp.o -MF CMakeFiles/ConsensusCore.dir/Mutation.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Mutation.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Mutation.cpp /srv/build/spades-3.15.5+dfsg/assembler/src/common/modules/coverage_model/kmer_coverage_model.cpp: In member function 'void coverage_model::KMerCoverageModel::Fit()': /srv/build/spades-3.15.5+dfsg/assembler/src/common/modules/coverage_model/kmer_coverage_model.cpp:325:23: warning: conversion from 'size_t' {aka 'long unsigned int'} to '__gnu_cxx::__alloc_traits, double>::value_type' {aka 'double'} may change value []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wconversion-Wconversion]8;;] 325 | if (converged_ && Valley_ > x[2] && x[2] > 2) { | ^~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/modules/coverage_model/kmer_coverage_model.cpp:359:28: warning: conversion from 'size_t' {aka 'long unsigned int'} to 'double' may change value []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wconversion-Wconversion]8;;] 359 | ErrorThreshold_ = (Valley_ < mean_coverage_ ? | ^~~~~~~ [ 9%] Building C object ext/easel/CMakeFiles/easel.dir/esl_gumbel.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_gumbel.c.o -MF CMakeFiles/easel.dir/esl_gumbel.c.o.d -o CMakeFiles/easel.dir/esl_gumbel.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_gumbel.c [ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamReader.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamReader.cpp.o -MF CMakeFiles/BamTools.dir/BamReader.cpp.o.d -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/BamReader.cpp [ 9%] Building C object ext/easel/CMakeFiles/easel.dir/esl_heap.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_heap.c.o -MF CMakeFiles/easel.dir/esl_heap.c.o.d -o CMakeFiles/easel.dir/esl_heap.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_heap.c [ 9%] Building C object ext/easel/CMakeFiles/easel.dir/esl_histogram.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_histogram.c.o -MF CMakeFiles/easel.dir/esl_histogram.c.o.d -o CMakeFiles/easel.dir/esl_histogram.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_histogram.c [ 10%] Building C object ext/easel/CMakeFiles/easel.dir/esl_hmm.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_hmm.c.o -MF CMakeFiles/easel.dir/esl_hmm.c.o.d -o CMakeFiles/easel.dir/esl_hmm.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_hmm.c /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp: In member function 'virtual bool io::binary::FullPackIO::BinRead(std::istream&, Type&)': /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:363:10: warning: unused variable 'loaded' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-variable-Wunused-variable]8;;] 363 | bool loaded = base::BinRead(is, gp); | ^~~~~~ [ 10%] Building C object ext/easel/CMakeFiles/easel.dir/esl_hyperexp.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_hyperexp.c.o -MF CMakeFiles/easel.dir/esl_hyperexp.c.o.d -o CMakeFiles/easel.dir/esl_hyperexp.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_hyperexp.c /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp: In instantiation of 'void io::binary::{anonymous}::Loader::Load() [with T = omnigraph::EdgesPositionHandler]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:210:45: required from here /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:101:14: warning: unused variable 'loaded' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-variable-Wunused-variable]8;;] 101 | bool loaded = io.Load(basename, component); | ^~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp: In instantiation of 'void io::binary::{anonymous}::Loader::Load() [with T = debruijn_graph::EdgeIndex]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:213:34: required from here /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:101:14: warning: unused variable 'loaded' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-variable-Wunused-variable]8;;] /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp: In instantiation of 'void io::binary::{anonymous}::Loader::Load() [with T = debruijn_graph::KmerMapper]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:216:35: required from here /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:101:14: warning: unused variable 'loaded' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-variable-Wunused-variable]8;;] /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp: In instantiation of 'void io::binary::{anonymous}::Loader::Load() [with T = omnigraph::FlankingCoverage]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:219:41: required from here /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:101:14: warning: unused variable 'loaded' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-variable-Wunused-variable]8;;] /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp: In instantiation of 'void io::binary::{anonymous}::BinReader::Read() [with T = omnigraph::EdgesPositionHandler]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:256:45: required from here /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:130:14: warning: unused variable 'loaded' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-variable-Wunused-variable]8;;] 130 | auto loaded = io.BinRead(is, component); | ^~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp: In instantiation of 'void io::binary::{anonymous}::BinReader::Read() [with T = debruijn_graph::EdgeIndex]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:259:34: required from here /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:130:14: warning: unused variable 'loaded' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-variable-Wunused-variable]8;;] /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp: In instantiation of 'void io::binary::{anonymous}::BinReader::Read() [with T = debruijn_graph::KmerMapper]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:262:35: required from here /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:130:14: warning: unused variable 'loaded' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-variable-Wunused-variable]8;;] /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp: In instantiation of 'void io::binary::{anonymous}::BinReader::Read() [with T = omnigraph::FlankingCoverage]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:265:41: required from here /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/binary/graph_pack.cpp:130:14: warning: unused variable 'loaded' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-variable-Wunused-variable]8;;] [ 10%] Building C object ext/easel/CMakeFiles/easel.dir/esl_keyhash.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_keyhash.c.o -MF CMakeFiles/easel.dir/esl_keyhash.c.o.d -o CMakeFiles/easel.dir/esl_keyhash.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_keyhash.c [ 10%] Building CXX object ext/cppformat/CMakeFiles/format.dir/posix.cc.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/cppformat && /usr/bin/c++ -DFMT_USE_FILE_DESCRIPTORS=1 -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/cppformat -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -Wextra -pedantic -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/cppformat/CMakeFiles/format.dir/posix.cc.o -MF CMakeFiles/format.dir/posix.cc.o.d -o CMakeFiles/format.dir/posix.cc.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/cppformat/posix.cc [ 10%] Building C object ext/easel/CMakeFiles/easel.dir/esl_mem.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_mem.c.o -MF CMakeFiles/easel.dir/esl_mem.c.o.d -o CMakeFiles/easel.dir/esl_mem.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_mem.c [ 10%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o -MF CMakeFiles/BamTools.dir/BamWriter.cpp.o.d -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/BamWriter.cpp [ 10%] Building C object ext/easel/CMakeFiles/easel.dir/esl_minimizer.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_minimizer.c.o -MF CMakeFiles/easel.dir/esl_minimizer.c.o.d -o CMakeFiles/easel.dir/esl_minimizer.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_minimizer.c [ 11%] Building C object ext/easel/CMakeFiles/easel.dir/esl_mixgev.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_mixgev.c.o -MF CMakeFiles/easel.dir/esl_mixgev.c.o.d -o CMakeFiles/easel.dir/esl_mixgev.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_mixgev.c make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 11%] Built target mimalloc-obj [ 11%] Building C object ext/easel/CMakeFiles/easel.dir/esl_mpi.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_mpi.c.o -MF CMakeFiles/easel.dir/esl_mpi.c.o.d -o CMakeFiles/easel.dir/esl_mpi.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_mpi.c [ 11%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msa.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msa.c.o -MF CMakeFiles/easel.dir/esl_msa.c.o.d -o CMakeFiles/easel.dir/esl_msa.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msa.c [ 11%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msacluster.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msacluster.c.o -MF CMakeFiles/easel.dir/esl_msacluster.c.o.d -o CMakeFiles/easel.dir/esl_msacluster.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msacluster.c [ 12%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msafile.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msafile.c.o -MF CMakeFiles/easel.dir/esl_msafile.c.o.d -o CMakeFiles/easel.dir/esl_msafile.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msafile.c [ 12%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msafile2.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msafile2.c.o -MF CMakeFiles/easel.dir/esl_msafile2.c.o.d -o CMakeFiles/easel.dir/esl_msafile2.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msafile2.c [ 12%] Linking CXX static library libformat.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/cppformat && /usr/bin/cmake -P CMakeFiles/format.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/cppformat && /usr/bin/cmake -E cmake_link_script CMakeFiles/format.dir/link.txt --verbose=1 /usr/bin/ar qc libformat.a CMakeFiles/format.dir/format.cc.o CMakeFiles/format.dir/posix.cc.o In file included from /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph/gfa_reader.cpp:10: /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/construction_helper.hpp: In instantiation of 'void omnigraph::ConstructionHelper::DeleteLink(VertexId, EdgeId) [with DataMaster = debruijn_graph::DeBruijnDataMaster; VertexId = omnigraph::impl::VertexId; EdgeId = omnigraph::impl::EdgeId]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/construction_helper.hpp:97:9: required from 'void omnigraph::ConstructionHelper::LinkEdges(EdgeId, EdgeId) [with DataMaster = debruijn_graph::DeBruijnDataMaster; EdgeId = omnigraph::impl::EdgeId]' /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph/gfa_reader.cpp:109:33: required from here /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/construction_helper.hpp:102:14: warning: unused variable 'res' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-variable-Wunused-variable]8;;] 102 | bool res = graph_.vertex(v).RemoveOutgoingEdge(e); | ^~~ [ 12%] Linking CXX static library libsequence.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/sequence && /usr/bin/cmake -P CMakeFiles/sequence.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/sequence.dir/link.txt --verbose=1 /usr/bin/ranlib libformat.a /usr/bin/ar qc libsequence.a CMakeFiles/sequence.dir/sequence_tools.cpp.o [ 13%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o -MF CMakeFiles/BamTools.dir/SamHeader.cpp.o.d -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamHeader.cpp make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' /usr/bin/ranlib libsequence.a [ 13%] Built target format make -f common/utils/CMakeFiles/utils.dir/build.make common/utils/CMakeFiles/utils.dir/depend make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /srv/build/spades-3.15.5+dfsg/assembler/src /srv/build/spades-3.15.5+dfsg/assembler/src/common/utils /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils/CMakeFiles/utils.dir/DependInfo.cmake --color= [ 13%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msafile_a2m.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msafile_a2m.c.o -MF CMakeFiles/easel.dir/esl_msafile_a2m.c.o.d -o CMakeFiles/easel.dir/esl_msafile_a2m.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msafile_a2m.c make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make -f common/utils/CMakeFiles/utils.dir/build.make common/utils/CMakeFiles/utils.dir/build make[4]: Entering directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 13%] Building CXX object common/utils/CMakeFiles/utils.dir/memory_limit.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/utils/CMakeFiles/utils.dir/memory_limit.cpp.o -MF CMakeFiles/utils.dir/memory_limit.cpp.o.d -o CMakeFiles/utils.dir/memory_limit.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/utils/memory_limit.cpp [ 13%] Built target sequence [ 13%] Building CXX object common/utils/CMakeFiles/utils.dir/filesystem/copy_file.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/utils/CMakeFiles/utils.dir/filesystem/copy_file.cpp.o -MF CMakeFiles/utils.dir/filesystem/copy_file.cpp.o.d -o CMakeFiles/utils.dir/filesystem/copy_file.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/utils/filesystem/copy_file.cpp [ 13%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msafile_afa.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msafile_afa.c.o -MF CMakeFiles/easel.dir/esl_msafile_afa.c.o.d -o CMakeFiles/easel.dir/esl_msafile_afa.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msafile_afa.c make[4]: *** [projects/spaligner/CMakeFiles/mapping_printer.dir/build.make:79: projects/spaligner/CMakeFiles/mapping_printer.dir/mapping_printer.cpp.o] Error 1 make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:2719: projects/spaligner/CMakeFiles/mapping_printer.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... [ 13%] Building CXX object common/utils/CMakeFiles/utils.dir/filesystem/path_helper.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/utils/CMakeFiles/utils.dir/filesystem/path_helper.cpp.o -MF CMakeFiles/utils.dir/filesystem/path_helper.cpp.o.d -o CMakeFiles/utils.dir/filesystem/path_helper.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/utils/filesystem/path_helper.cpp [ 13%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msafile_clustal.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msafile_clustal.c.o -MF CMakeFiles/easel.dir/esl_msafile_clustal.c.o.d -o CMakeFiles/easel.dir/esl_msafile_clustal.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msafile_clustal.c [ 14%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msafile_phylip.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msafile_phylip.c.o -MF CMakeFiles/easel.dir/esl_msafile_phylip.c.o.d -o CMakeFiles/easel.dir/esl_msafile_phylip.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msafile_phylip.c [ 14%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msafile_psiblast.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msafile_psiblast.c.o -MF CMakeFiles/easel.dir/esl_msafile_psiblast.c.o.d -o CMakeFiles/easel.dir/esl_msafile_psiblast.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msafile_psiblast.c In file included from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/graph_core.hpp:15, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/observable_graph.hpp:11, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/graph.hpp:10, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph/gfa_reader.hpp:8, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/io/graph/gfa_reader.cpp:7: /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp: In member function 'void adt::impl::HybridAllocatedStorage::grow(typename adt::impl::SmallPODVectorData::size_type) [with T = omnigraph::impl::EdgeId; unsigned int PreAllocated = 3]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ make[4]: *** [common/io/binary/CMakeFiles/binary_io.dir/build.make:79: common/io/binary/CMakeFiles/binary_io.dir/graph_pack.cpp.o] Error 1 make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:2039: common/io/binary/CMakeFiles/binary_io.dir/all] Error 2 [ 14%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msafile_selex.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msafile_selex.c.o -MF CMakeFiles/easel.dir/esl_msafile_selex.c.o.d -o CMakeFiles/easel.dir/esl_msafile_selex.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msafile_selex.c In member function 'T* adt::SmallPODVector::insert(const_iterator, const T&) [with T = omnigraph::impl::EdgeId; Container = adt::impl::HybridAllocatedStorage]', inlined from 'void omnigraph::PairedVertex::AddOutgoingEdge(EdgeId) [with DataMaster = debruijn_graph::DeBruijnDataMaster]' at /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/graph_core.hpp:194:31: /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:565:13: warning: array subscript 1 is outside array bounds of 'omnigraph::PairedVertex::EdgeId [1]' {aka 'omnigraph::impl::EdgeId [1]'} []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 565 | ++vptr; | ^~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/graph_core.hpp: In member function 'void omnigraph::PairedVertex::AddOutgoingEdge(EdgeId) [with DataMaster = debruijn_graph::DeBruijnDataMaster]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/graph_core.hpp:193:33: note: at offset 8 into object 'e' of size 8 193 | void AddOutgoingEdge(EdgeId e) { | ~~~~~~~^ [ 14%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o -MF CMakeFiles/BamTools.dir/SamProgram.cpp.o.d -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamProgram.cpp [ 14%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msafile_stockholm.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msafile_stockholm.c.o -MF CMakeFiles/easel.dir/esl_msafile_stockholm.c.o.d -o CMakeFiles/easel.dir/esl_msafile_stockholm.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msafile_stockholm.c [ 14%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msashuffle.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msashuffle.c.o -MF CMakeFiles/easel.dir/esl_msashuffle.c.o.d -o CMakeFiles/easel.dir/esl_msashuffle.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msashuffle.c [ 15%] Building C object ext/easel/CMakeFiles/easel.dir/esl_msaweight.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_msaweight.c.o -MF CMakeFiles/easel.dir/esl_msaweight.c.o.d -o CMakeFiles/easel.dir/esl_msaweight.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_msaweight.c [ 15%] Building C object ext/easel/CMakeFiles/easel.dir/esl_normal.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_normal.c.o -MF CMakeFiles/easel.dir/esl_normal.c.o.d -o CMakeFiles/easel.dir/esl_normal.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_normal.c [ 15%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/APInt.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/APInt.cpp.o -MF CMakeFiles/llvm-support.dir/APInt.cpp.o.d -o CMakeFiles/llvm-support.dir/APInt.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/APInt.cpp [ 15%] Building C object ext/easel/CMakeFiles/easel.dir/esl_paml.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_paml.c.o -MF CMakeFiles/easel.dir/esl_paml.c.o.d -o CMakeFiles/easel.dir/esl_paml.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_paml.c [ 15%] Building C object ext/easel/CMakeFiles/easel.dir/esl_random.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_random.c.o -MF CMakeFiles/easel.dir/esl_random.c.o.d -o CMakeFiles/easel.dir/esl_random.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_random.c [ 15%] Building C object ext/easel/CMakeFiles/easel.dir/esl_randomseq.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_randomseq.c.o -MF CMakeFiles/easel.dir/esl_randomseq.c.o.d -o CMakeFiles/easel.dir/esl_randomseq.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_randomseq.c [ 17%] Building CXX object common/utils/CMakeFiles/utils.dir/filesystem/temporary.cpp.o [ 17%] Building C object ext/easel/CMakeFiles/easel.dir/esl_ratematrix.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/utils/CMakeFiles/utils.dir/filesystem/temporary.cpp.o -MF CMakeFiles/utils.dir/filesystem/temporary.cpp.o.d -o CMakeFiles/utils.dir/filesystem/temporary.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/utils/filesystem/temporary.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_ratematrix.c.o -MF CMakeFiles/easel.dir/esl_ratematrix.c.o.d -o CMakeFiles/easel.dir/esl_ratematrix.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_ratematrix.c [ 17%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -MF CMakeFiles/BamTools.dir/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamProgramChain.cpp [ 17%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -MF CMakeFiles/BamTools.dir/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamReadGroup.cpp [ 17%] Building C object ext/easel/CMakeFiles/easel.dir/esl_recorder.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_recorder.c.o -MF CMakeFiles/easel.dir/esl_recorder.c.o.d -o CMakeFiles/easel.dir/esl_recorder.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_recorder.c [ 17%] Building C object ext/easel/CMakeFiles/easel.dir/esl_regexp.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_regexp.c.o -MF CMakeFiles/easel.dir/esl_regexp.c.o.d -o CMakeFiles/easel.dir/esl_regexp.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_regexp.c [ 17%] Building C object ext/easel/CMakeFiles/easel.dir/esl_rootfinder.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_rootfinder.c.o -MF CMakeFiles/easel.dir/esl_rootfinder.c.o.d -o CMakeFiles/easel.dir/esl_rootfinder.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_rootfinder.c [ 17%] Linking CXX static library libgraphio.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/io/graph && /usr/bin/cmake -P CMakeFiles/graphio.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/io/graph && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphio.dir/link.txt --verbose=1 /usr/bin/ar qc libgraphio.a CMakeFiles/graphio.dir/gfa_reader.cpp.o CMakeFiles/graphio.dir/gfa_writer.cpp.o CMakeFiles/graphio.dir/fastg_writer.cpp.o /usr/bin/ranlib libgraphio.a [ 17%] Building C object ext/easel/CMakeFiles/easel.dir/esl_scorematrix.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_scorematrix.c.o -MF CMakeFiles/easel.dir/esl_scorematrix.c.o.d -o CMakeFiles/easel.dir/esl_scorematrix.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_scorematrix.c [ 18%] Building C object ext/easel/CMakeFiles/easel.dir/esl_sq.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_sq.c.o -MF CMakeFiles/easel.dir/esl_sq.c.o.d -o CMakeFiles/easel.dir/esl_sq.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_sq.c make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 18%] Built target graphio [ 18%] Building C object ext/easel/CMakeFiles/easel.dir/esl_sqio.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_sqio.c.o -MF CMakeFiles/easel.dir/esl_sqio.c.o.d -o CMakeFiles/easel.dir/esl_sqio.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_sqio.c [ 18%] Building C object ext/easel/CMakeFiles/easel.dir/esl_sqio_ascii.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_sqio_ascii.c.o -MF CMakeFiles/easel.dir/esl_sqio_ascii.c.o.d -o CMakeFiles/easel.dir/esl_sqio_ascii.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_sqio_ascii.c [ 18%] Building C object ext/easel/CMakeFiles/easel.dir/esl_sqio_ncbi.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_sqio_ncbi.c.o -MF CMakeFiles/easel.dir/esl_sqio_ncbi.c.o.d -o CMakeFiles/easel.dir/esl_sqio_ncbi.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_sqio_ncbi.c [ 18%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamReadGroupDictionary.cpp [ 18%] Building C object ext/easel/CMakeFiles/easel.dir/esl_sse.c.o cd 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ext/easel/CMakeFiles/easel.dir/esl_ssi.c.o [ 20%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o -MF CMakeFiles/BamTools.dir/SamSequence.cpp.o.d -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /srv/build/spades-3.15.5+dfsg/assemblecd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_ssi.c.o -MF CMakeFiles/easel.dir/esl_ssi.c.o.d -o CMakeFiles/easel.dir/esl_ssi.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_ssi.c r/ext/src/bamtools/api/SamSequence.cpp [ 20%] Building C object ext/easel/CMakeFiles/easel.dir/esl_stack.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_stack.c.o -MF CMakeFiles/easel.dir/esl_stack.c.o.d -o CMakeFiles/easel.dir/esl_stack.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_stack.c [ 20%] Building C object ext/easel/CMakeFiles/easel.dir/esl_stats.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_stats.c.o -MF CMakeFiles/easel.dir/esl_stats.c.o.d -o CMakeFiles/easel.dir/esl_stats.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_stats.c [ 20%] Linking CXX static library libcoverage_model.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/modules/coverage_model && /usr/bin/cmake -P CMakeFiles/coverage_model.dir/cmake_clean_target.cmake [ 20%] Building C object ext/easel/CMakeFiles/easel.dir/esl_stopwatch.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_stopwatch.c.o -MF CMakeFiles/easel.dir/esl_stopwatch.c.o.d -o CMakeFiles/easel.dir/esl_stopwatch.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_stopwatch.c cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/modules/coverage_model && /usr/bin/cmake -E cmake_link_script CMakeFiles/coverage_model.dir/link.txt --verbose=1 /usr/bin/ar qc libcoverage_model.a CMakeFiles/coverage_model.dir/kmer_coverage_model.cpp.o [ 21%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o [ 21%] Building C object ext/easel/CMakeFiles/easel.dir/esl_stretchexp.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o -MF CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o.d -o CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/PairwiseAlignment.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_stretchexp.c.o -MF CMakeFiles/easel.dir/esl_stretchexp.c.o.d -o CMakeFiles/easel.dir/esl_stretchexp.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_stretchexp.c [ 22%] Building C object ext/easel/CMakeFiles/easel.dir/esl_threads.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_threads.c.o -MF CMakeFiles/easel.dir/esl_threads.c.o.d -o CMakeFiles/easel.dir/esl_threads.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_threads.c /usr/bin/ranlib libcoverage_model.a [ 22%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamSequenceDictionary.cpp [ 22%] Building C object ext/easel/CMakeFiles/easel.dir/esl_tree.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_tree.c.o -MF CMakeFiles/easel.dir/esl_tree.c.o.d -o CMakeFiles/easel.dir/esl_tree.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_tree.c [ 22%] Built target coverage_model [ 22%] Building C object ext/easel/CMakeFiles/easel.dir/esl_vectorops.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_vectorops.c.o -MF CMakeFiles/easel.dir/esl_vectorops.c.o.d -o CMakeFiles/easel.dir/esl_vectorops.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_vectorops.c [ 22%] Building C object ext/easel/CMakeFiles/easel.dir/esl_vmx.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_vmx.c.o -MF CMakeFiles/easel.dir/esl_vmx.c.o.d -o CMakeFiles/easel.dir/esl_vmx.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_vmx.c [ 22%] Building C object ext/easel/CMakeFiles/easel.dir/esl_weibull.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_weibull.c.o -MF CMakeFiles/easel.dir/esl_weibull.c.o.d -o CMakeFiles/easel.dir/esl_weibull.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_weibull.c In file included from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/graph_core.hpp:15, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/observable_graph.hpp:11, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/graph.hpp:10, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/paired_info/distance_estimation.hpp:13, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/paired_info/distance_estimation.cpp:1: /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp: In member function 'void adt::impl::HybridAllocatedStorage::grow(typename adt::impl::SmallPODVectorData::size_type) [with T = omnigraph::de::PointT; unsigned int PreAllocated = 3]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building C object ext/easel/CMakeFiles/easel.dir/esl_workqueue.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_workqueue.c.o -MF CMakeFiles/easel.dir/esl_workqueue.c.o.d -o CMakeFiles/easel.dir/esl_workqueue.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_workqueue.c [ 23%] Building C object ext/easel/CMakeFiles/easel.dir/esl_wuss.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -isystem /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/easel/CMakeFiles/easel.dir/esl_wuss.c.o -MF CMakeFiles/easel.dir/esl_wuss.c.o.d -o CMakeFiles/easel.dir/esl_wuss.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/easel/esl_wuss.c [ 23%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/bam/BamHeader_p.cpp [ 23%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/bam/BamMultiReader_p.cpp [ 23%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/bam/BamRandomAccessController_p.cpp [ 25%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/bam/BamReader_p.cpp /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp: In member function 'void adt::impl::HybridAllocatedStorage::grow(typename adt::impl::SmallPODVectorData::size_type) [with T = omnigraph::de::RawPointT; unsigned int PreAllocated = 3]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/bam/BamWriter_p.cpp /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp: In member function 'void adt::impl::HybridAllocatedStorage::grow(typename adt::impl::SmallPODVectorData::size_type) [with T = omnigraph::de::PointT; unsigned int PreAllocated = 3]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamIndexFactory_p.cpp [ 25%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp [ 25%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o [ 26%] Building CXX object common/utils/CMakeFiles/utils.dir/filesystem/glob.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/utils/CMakeFiles/utils.dir/filesystem/glob.cpp.o -MF CMakeFiles/utils.dir/filesystem/glob.cpp.o.d -o CMakeFiles/utils.dir/filesystem/glob.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/utils/filesystem/glob.cpp [ 26%] Building CXX object common/utils/CMakeFiles/utils.dir/logger/logger_impl.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/mimalloc/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/utils/CMakeFiles/utils.dir/logger/logger_impl.cpp.o -MF CMakeFiles/utils.dir/logger/logger_impl.cpp.o.d -o CMakeFiles/utils.dir/logger/logger_impl.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/utils/logger/logger_impl.cpp [ 26%] Linking C static library libeasel.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cmake -P CMakeFiles/easel.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/easel && /usr/bin/cmake -E cmake_link_script CMakeFiles/easel.dir/link.txt --verbose=1 /usr/bin/ar qc libeasel.a CMakeFiles/easel.dir/easel.c.o CMakeFiles/easel.dir/esl_alphabet.c.o CMakeFiles/easel.dir/esl_avx.c.o CMakeFiles/easel.dir/esl_buffer.c.o CMakeFiles/easel.dir/esl_cluster.c.o CMakeFiles/easel.dir/esl_composition.c.o CMakeFiles/easel.dir/esl_dirichlet.c.o CMakeFiles/easel.dir/esl_distance.c.o CMakeFiles/easel.dir/esl_dmatrix.c.o CMakeFiles/easel.dir/esl_dsqdata.c.o CMakeFiles/easel.dir/esl_exponential.c.o CMakeFiles/easel.dir/esl_fileparser.c.o CMakeFiles/easel.dir/esl_gamma.c.o CMakeFiles/easel.dir/esl_gencode.c.o CMakeFiles/easel.dir/esl_getopts.c.o CMakeFiles/easel.dir/esl_gev.c.o CMakeFiles/easel.dir/esl_gumbel.c.o CMakeFiles/easel.dir/esl_heap.c.o CMakeFiles/easel.dir/esl_histogram.c.o CMakeFiles/easel.dir/esl_hmm.c.o CMakeFiles/easel.dir/esl_hyperexp.c.o CMakeFiles/easel.dir/esl_keyhash.c.o CMakeFiles/easel.dir/esl_mem.c.o CMakeFiles/easel.dir/esl_minimizer.c.o CMakeFiles/easel.dir/esl_mixgev.c.o CMakeFiles/easel.dir/esl_mpi.c.o CMakeFiles/easel.dir/esl_msa.c.o CMakeFiles/easel.dir/esl_msacluster.c.o CMakeFiles/easel.dir/esl_msafile.c.o CMakeFiles/easel.dir/esl_msafile2.c.o CMakeFiles/easel.dir/esl_msafile_a2m.c.o CMakeFiles/easel.dir/esl_msafile_afa.c.o CMakeFiles/easel.dir/esl_msafile_clustal.c.o CMakeFiles/easel.dir/esl_msafile_phylip.c.o CMakeFiles/easel.dir/esl_msafile_psiblast.c.o CMakeFiles/easel.dir/esl_msafile_selex.c.o CMakeFiles/easel.dir/esl_msafile_stockholm.c.o CMakeFiles/easel.dir/esl_msashuffle.c.o CMakeFiles/easel.dir/esl_msaweight.c.o CMakeFiles/easel.dir/esl_normal.c.o CMakeFiles/easel.dir/esl_paml.c.o CMakeFiles/easel.dir/esl_random.c.o CMakeFiles/easel.dir/esl_randomseq.c.o CMakeFiles/easel.dir/esl_ratematrix.c.o CMakeFiles/easel.dir/esl_recorder.c.o CMakeFiles/easel.dir/esl_regexp.c.o CMakeFiles/easel.dir/esl_rootfinder.c.o CMakeFiles/easel.dir/esl_scorematrix.c.o CMakeFiles/easel.dir/esl_sq.c.o CMakeFiles/easel.dir/esl_sqio.c.o CMakeFiles/easel.dir/esl_sqio_ascii.c.o CMakeFiles/easel.dir/esl_sqio_ncbi.c.o CMakeFiles/easel.dir/esl_sse.c.o CMakeFiles/easel.dir/esl_ssi.c.o CMakeFiles/easel.dir/esl_stack.c.o CMakeFiles/easel.dir/esl_stats.c.o CMakeFiles/easel.dir/esl_stopwatch.c.o CMakeFiles/easel.dir/esl_stretchexp.c.o CMakeFiles/easel.dir/esl_threads.c.o CMakeFiles/easel.dir/esl_tree.c.o CMakeFiles/easel.dir/esl_vectorops.c.o CMakeFiles/easel.dir/esl_vmx.c.o CMakeFiles/easel.dir/esl_weibull.c.o CMakeFiles/easel.dir/esl_workqueue.c.o CMakeFiles/easel.dir/esl_wuss.c.o /usr/bin/ranlib libeasel.a In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree_container.h:21, from /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/safe_btree_set.h:36, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/graph_core.hpp:21: In member function 'void btree::btree_node::set_child(int, btree::btree_node*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256> >, std::less, std::allocator > >, std::less, std::allocator > > > >, 256> > > >, 256>]', inlined from 'void btree::btree::rebalance_or_split(iterator*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256> >, std::less, std::allocator > >, std::less, std::allocator > > > >, 256> > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:2151:24: /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:577:23: warning: array subscript 'btree::btree_node > >, std::less, std::allocator > > > >, 256> >, std::less, std::allocator > >, std::less, std::allocator > > > >, 256> > > >, 256> >[0]' is partly outside array bounds of 'unsigned char [344]' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 577 | *mutable_child(i) = c; | ~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/aarch64-linux-gnu/c++/12/bits/c++allocator.h:33, from /usr/include/c++/12/bits/allocator.h:46, from /usr/include/c++/12/vector:61, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/basic_graph_stats.hpp:10, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/paired_info/distance_estimation.hpp:12: In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = char]', inlined from 'btree::btree::node_type* btree::btree::new_internal_node(node_type*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256> >, std::less, std::allocator > >, std::less, std::allocator > > > >, 256> > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:1281:47, inlined from 'void btree::btree::rebalance_or_split(iterator*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256> >, std::less, std::allocator > >, std::less, std::allocator > > > >, 256> > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:2150:33: /usr/include/c++/12/bits/new_allocator.h:137:55: note: object of size 344 allocated by 'operator new' 137 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In member function 'void btree::btree_node::set_child(int, btree::btree_node*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256> >, std::less, std::allocator > >, std::less, std::allocator > > > >, 256> > > >, 256>]', inlined from 'void btree::btree::rebalance_or_split(iterator*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256> >, std::less, std::allocator > >, std::less, std::allocator > > > >, 256> > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:2151:24: /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:578:23: warning: array subscript 'btree::btree_node > >, std::less, std::allocator > > > >, 256> >, std::less, std::allocator > >, std::less, std::allocator > > > >, 256> > > >, 256> >[0]' is partly outside array bounds of 'unsigned char [344]' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 578 | c->fields_.parent = this; | ~~~~~~~~~~~~~~~~~~^~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = char]', inlined from 'btree::btree::node_type* btree::btree::new_internal_node(node_type*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256> >, std::less, std::allocator > >, std::less, std::allocator > > > >, 256> > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:1281:47, inlined from 'void btree::btree::rebalance_or_split(iterator*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256> >, std::less, std::allocator > >, std::less, std::allocator > > > >, 256> > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:2150:33: /usr/include/c++/12/bits/new_allocator.h:137:55: note: object of size 344 allocated by 'operator new' 137 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 27%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/BamDeviceFactory_p.cpp [ 27%] Built target easel [ 27%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/BamFile_p.cpp [ 27%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/BgzfStream_p.cpp In member function 'void btree::btree_node::set_child(int, btree::btree_node*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256>]', inlined from 'void btree::btree::rebalance_or_split(iterator*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:2151:24: /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:577:23: warning: array subscript 'btree::btree_node > >, std::less, std::allocator > > > >, 256> >[0]' is partly outside array bounds of 'unsigned char [384]' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 577 | *mutable_child(i) = c; | ~~~~~~~~~~~~~~~~~~^~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = char]', inlined from 'btree::btree::node_type* btree::btree::new_internal_node(node_type*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:1281:47, inlined from 'void btree::btree::rebalance_or_split(iterator*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:2150:33: /usr/include/c++/12/bits/new_allocator.h:137:55: note: object of size 384 allocated by 'operator new' 137 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In member function 'void btree::btree_node::set_child(int, btree::btree_node*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256>]', inlined from 'void btree::btree::rebalance_or_split(iterator*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:2151:24: /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:578:23: warning: array subscript 'btree::btree_node > >, std::less, std::allocator > > > >, 256> >[0]' is partly outside array bounds of 'unsigned char [384]' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Warray-bounds-Warray-bounds]8;;] 578 | c->fields_.parent = this; | ~~~~~~~~~~~~~~~~~~^~~~~~ In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = char]', inlined from 'btree::btree::node_type* btree::btree::new_internal_node(node_type*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:1281:47, inlined from 'void btree::btree::rebalance_or_split(iterator*) [with Params = btree::btree_map_params > >, std::less, std::allocator > > > >, 256>]' at /srv/build/spades-3.15.5+dfsg/assembler/ext/include/btree/btree.h:2150:33: /usr/include/c++/12/bits/new_allocator.h:137:55: note: object of size 384 allocated by 'operator new' 137 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 27%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/ByteArray_p.cpp [ 27%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/ILocalIODevice_p.cpp [ 28%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/ParallelBgzfStream_p.cpp [ 28%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/RollingBuffer_p.cpp [ 28%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/SerialBgzfStream_p.cpp [ 28%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Sequence.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Sequence.cpp.o -MF CMakeFiles/ConsensusCore.dir/Sequence.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Sequence.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Sequence.cpp [ 28%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c [ 28%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c:32: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c: In function 'bgzf_check_EOF': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:73:34: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] 73 | #define _bgzf_read(fp, buf, len) fread(buf, 1, len, (_bgzf_file_t)fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c:578:9: note: in expansion of macro '_bgzf_read' 578 | _bgzf_read(fp->fp, buf, 28); | ^~~~~~~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:46: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c: In function 'kftp_send_cmd': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:236:9: note: in expansion of macro 'netwrite' 236 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c: In function 'khttp_connect_file': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result-Wunused-result]8;;] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:415:9: note: in expansion of macro 'netwrite' 415 | netwrite(fp->fd, buf, l); | ^~~~~~~~ [ 29%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c:5: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c:4: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined 240 | unpackInt16(const uint8_t* buffer); | ^~~~~~~~~~~ [ 29%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c [ 29%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c:12: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c:11: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined 240 | unpackInt16(const uint8_t* buffer); | ^~~~~~~~~~~ cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c [ 29%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Utils.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Utils.cpp.o -MF CMakeFiles/ConsensusCore.dir/Utils.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Utils.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Utils.cpp [ 29%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o [ 29%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/queue.c cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c [ 30%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.c In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c:14: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c:13: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined 240 | unpackInt16(const uint8_t* buffer); | ^~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/queue.c: In function 'queue_print_status': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/queue.c:344:62: warning: format '%lld' expects argument of type 'long long int', but argument 8 has type 'int64_t' {aka 'long int'} []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat=-Wformat=]8;;] 344 | fprintf(fp, "mem=%d head=%d tail=%d n=%d length=%d id=%lld ordered=%d num_adders=%d num_getters=%d\n", | ~~~^ | | | long long int | %ld 345 | q->mem, q->head, q->tail, q->n, q->length, q->id, q->ordered, q->num_adders, q->num_getters); | ~~~~~ | | | int64_t {aka long int} In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/queue.c:6: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h: At top level: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ [ 30%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c:8: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c:7: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined 240 | unpackInt16(const uint8_t* buffer); | ^~~~~~~~~~~ [ 30%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.h:11, from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c:10: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c:7: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined 240 | unpackInt16(const uint8_t* buffer); | ^~~~~~~~~~~ cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/sam/SamFormatParser_p.cpp [ 30%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/sam/SamFormatPrinter_p.cpp [ 30%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/sam/SamHeaderValidator_p.cpp [ 31%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/utils/BamException_p.cpp [ 31%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Atomic.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Atomic.cpp.o -MF CMakeFiles/llvm-support.dir/Atomic.cpp.o.d -o CMakeFiles/llvm-support.dir/Atomic.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Atomic.cpp [ 32%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o -MF CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o.d -o 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ext/llvm/CMakeFiles/llvm-support.dir/Debug.cpp.o -MF CMakeFiles/llvm-support.dir/Debug.cpp.o.d -o CMakeFiles/llvm-support.dir/Debug.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Debug.cpp [ 32%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Errno.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o -MF CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o.d -o CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/ErrorHandling.cpp [ 34%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/FoldingSet.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/FoldingSet.cpp.o -MF CMakeFiles/llvm-support.dir/FoldingSet.cpp.o.d -o CMakeFiles/llvm-support.dir/FoldingSet.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/FoldingSet.cpp [ 34%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Version.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Version.cpp.o -MF CMakeFiles/ConsensusCore.dir/Version.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Version.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Version.cpp [ 34%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o -MF CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Matrix/DenseMatrix.cpp In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Matrix/DenseMatrix.cpp:39: /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore/Matrix/DenseMatrix.hpp:40:10: fatal error: xmmintrin.h: No such file or directory 40 | #include  | ^~~~~~~~~~~~~ compilation terminated. make[4]: *** [ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make:177: ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o] Error 1 make[4]: *** Waiting for unfinished jobs.... [ 34%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o -MF CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o.d -o 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ext/llvm/CMakeFiles/llvm-support.dir/Hashing.cpp.o -MF CMakeFiles/llvm-support.dir/Hashing.cpp.o.d -o CMakeFiles/llvm-support.dir/Hashing.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Hashing.cpp [ 34%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Host.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/LineIterator.cpp.o -MF CMakeFiles/llvm-support.dir/LineIterator.cpp.o.d -o CMakeFiles/llvm-support.dir/LineIterator.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/LineIterator.cpp [ 35%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Locale.cpp.o [ 35%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MD5.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common 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-I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MD5.cpp.o -MF CMakeFiles/llvm-support.dir/MD5.cpp.o.d -o CMakeFiles/llvm-support.dir/MD5.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/MD5.cpp [ 35%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o -MF CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o.d -o CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/ManagedStatic.cpp [ 35%] Linking CXX static library libBamTools.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cmake -P CMakeFiles/BamTools.dir/cmake_clean_target.cmake [ 35%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o [ 36%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MemAlloc.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MemAlloc.cpp.o -MF CMakeFiles/llvm-support.dir/MemAlloc.cpp.o.d -o CMakeFiles/llvm-support.dir/MemAlloc.cpp.o -c 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/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/MemoryBuffer.cpp cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/bamtools/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 [ 36%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Path.cpp.o -MF CMakeFiles/llvm-support.dir/Path.cpp.o.d -o CMakeFiles/llvm-support.dir/Path.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Path.cpp make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 36%] Built target BamTools [ 36%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Process.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS 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ext/llvm/CMakeFiles/llvm-support.dir/SmallVector.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/SmallVector.cpp.o -MF CMakeFiles/llvm-support.dir/SmallVector.cpp.o.d -o CMakeFiles/llvm-support.dir/SmallVector.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/SmallVector.cpp [ 37%] Linking CXX static library libutils.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/cmake -P CMakeFiles/utils.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/utils.dir/link.txt --verbose=1 /usr/bin/ar qc libutils.a CMakeFiles/utils.dir/memory_limit.cpp.o CMakeFiles/utils.dir/filesystem/copy_file.cpp.o CMakeFiles/utils.dir/filesystem/path_helper.cpp.o CMakeFiles/utils.dir/filesystem/temporary.cpp.o CMakeFiles/utils.dir/filesystem/glob.cpp.o CMakeFiles/utils.dir/logger/logger_impl.cpp.o "../../ext/mimalloc/CMakeFiles/mimalloc-obj.dir/src/static.c.o" /usr/bin/ranlib libutils.a [ 37%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/SourceMgr.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/SourceMgr.cpp.o -MF CMakeFiles/llvm-support.dir/SourceMgr.cpp.o.d -o CMakeFiles/llvm-support.dir/SourceMgr.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/SourceMgr.cpp make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 38%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringExtras.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringExtras.cpp.o -MF CMakeFiles/llvm-support.dir/StringExtras.cpp.o.d -o CMakeFiles/llvm-support.dir/StringExtras.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/StringExtras.cpp [ 38%] Built target utils [ 38%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringMap.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringMap.cpp.o -MF CMakeFiles/llvm-support.dir/StringMap.cpp.o.d -o CMakeFiles/llvm-support.dir/StringMap.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/StringMap.cpp [ 38%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringRef.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringRef.cpp.o -MF CMakeFiles/llvm-support.dir/StringRef.cpp.o.d -o CMakeFiles/llvm-support.dir/StringRef.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/StringRef.cpp [ 38%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringSaver.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o -MF CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o.d -o CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/ThreadLocal.cpp In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Process.cpp:100: /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Process.inc: In static member function 'static size_t llvm::sys::Process::GetMallocUsage()': /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Process.inc:94:18: warning: 'mallinfo mallinfo()' is deprecated []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations-Wdeprecated-declarations]8;;] 94 | mi = ::mallinfo(); | ~~~~~~~~~~^~ In file included from /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Process.inc:35: /usr/include/malloc.h:114:24: note: declared here 114 | extern struct mallinfo mallinfo (void) __THROW __MALLOC_DEPRECATED; | ^~~~~~~~ [ 39%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Threading.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Threading.cpp.o -MF CMakeFiles/llvm-support.dir/Threading.cpp.o.d -o CMakeFiles/llvm-support.dir/Threading.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Threading.cpp [ 39%] Building CXX object common/paired_info/CMakeFiles/paired_info.dir/weighted_distance_estimation.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/paired_info && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion 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/srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o -MF CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o.d -o CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/TimeProfiler.cpp make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:1250: ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/all] Error 2 [ 39%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Twine.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Twine.cpp.o -MF CMakeFiles/llvm-support.dir/Twine.cpp.o.d -o CMakeFiles/llvm-support.dir/Twine.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Twine.cpp [ 39%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Unicode.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Unicode.cpp.o -MF CMakeFiles/llvm-support.dir/Unicode.cpp.o.d -o CMakeFiles/llvm-support.dir/Unicode.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/Unicode.cpp [ 39%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/WithColor.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/WithColor.cpp.o -MF CMakeFiles/llvm-support.dir/WithColor.cpp.o.d -o CMakeFiles/llvm-support.dir/WithColor.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/WithColor.cpp [ 40%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/YAMLParser.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/YAMLParser.cpp.o -MF CMakeFiles/llvm-support.dir/YAMLParser.cpp.o.d -o CMakeFiles/llvm-support.dir/YAMLParser.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/YAMLParser.cpp [ 40%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o -MF CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o.d -o CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/YAMLTraits.cpp [ 40%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o -MF CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o.d -o CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/raw_os_ostream.cpp [ 40%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/raw_ostream.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/raw_ostream.cpp.o -MF CMakeFiles/llvm-support.dir/raw_ostream.cpp.o.d -o CMakeFiles/llvm-support.dir/raw_ostream.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/raw_ostream.cpp [ 40%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regcomp.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regcomp.c.o -MF CMakeFiles/llvm-support.dir/regcomp.c.o.d -o CMakeFiles/llvm-support.dir/regcomp.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/regcomp.c [ 42%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regerror.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regerror.c.o -MF CMakeFiles/llvm-support.dir/regerror.c.o.d -o CMakeFiles/llvm-support.dir/regerror.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/regerror.c [ 42%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regexec.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regexec.c.o -MF CMakeFiles/llvm-support.dir/regexec.c.o.d -o CMakeFiles/llvm-support.dir/regexec.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/regexec.c [ 42%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regfree.c.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regfree.c.o -MF CMakeFiles/llvm-support.dir/regfree.c.o.d -o CMakeFiles/llvm-support.dir/regfree.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/regfree.c [ 42%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regstrlcpy.c.o [ 42%] Building CXX object common/paired_info/CMakeFiles/paired_info.dir/smoothing_distance_estimation.cpp.o cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -I/srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regstrlcpy.c.o -MF CMakeFiles/llvm-support.dir/regstrlcpy.c.o.d -o CMakeFiles/llvm-support.dir/regstrlcpy.c.o -c /srv/build/spades-3.15.5+dfsg/assembler/ext/src/llvm/regstrlcpy.c cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/paired_info && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/srv/build/spades-3.15.5+dfsg/assembler/src/include -I/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/include -I/srv/build/spades-3.15.5+dfsg/assembler/src -I/srv/build/spades-3.15.5+dfsg/assembler/src/common -isystem /srv/build/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /srv/build/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/srv/build/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -std=gnu++14 -MD -MT common/paired_info/CMakeFiles/paired_info.dir/smoothing_distance_estimation.cpp.o -MF CMakeFiles/paired_info.dir/smoothing_distance_estimation.cpp.o.d -o CMakeFiles/paired_info.dir/smoothing_distance_estimation.cpp.o -c /srv/build/spades-3.15.5+dfsg/assembler/src/common/paired_info/smoothing_distance_estimation.cpp [ 42%] Linking CXX static library ../../../lib/libgtest.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/googletest/googletest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgtest.a "CMakeFiles/gtest.dir/src/gtest-all.cc.o" /usr/bin/ranlib ../../../lib/libgtest.a make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target gtest [ 42%] Linking CXX static library libllvm-support.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/cmake -P CMakeFiles/llvm-support.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/ext/llvm && /usr/bin/cmake -E cmake_link_script CMakeFiles/llvm-support.dir/link.txt --verbose=1 /usr/bin/ar qc libllvm-support.a "CMakeFiles/llvm-support.dir/APFloat.cpp.o" "CMakeFiles/llvm-support.dir/APInt.cpp.o" "CMakeFiles/llvm-support.dir/Atomic.cpp.o" "CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o" "CMakeFiles/llvm-support.dir/Debug.cpp.o" "CMakeFiles/llvm-support.dir/Errno.cpp.o" "CMakeFiles/llvm-support.dir/Error.cpp.o" "CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o" "CMakeFiles/llvm-support.dir/FoldingSet.cpp.o" "CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o" "CMakeFiles/llvm-support.dir/Hashing.cpp.o" "CMakeFiles/llvm-support.dir/Host.cpp.o" "CMakeFiles/llvm-support.dir/JSON.cpp.o" "CMakeFiles/llvm-support.dir/LEB128.cpp.o" "CMakeFiles/llvm-support.dir/LineIterator.cpp.o" "CMakeFiles/llvm-support.dir/Locale.cpp.o" "CMakeFiles/llvm-support.dir/MD5.cpp.o" "CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o" "CMakeFiles/llvm-support.dir/MemAlloc.cpp.o" "CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o" "CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o" "CMakeFiles/llvm-support.dir/Path.cpp.o" "CMakeFiles/llvm-support.dir/Process.cpp.o" "CMakeFiles/llvm-support.dir/Program.cpp.o" "CMakeFiles/llvm-support.dir/Regex.cpp.o" "CMakeFiles/llvm-support.dir/Signals.cpp.o" "CMakeFiles/llvm-support.dir/SmallVector.cpp.o" "CMakeFiles/llvm-support.dir/SourceMgr.cpp.o" "CMakeFiles/llvm-support.dir/StringExtras.cpp.o" "CMakeFiles/llvm-support.dir/StringMap.cpp.o" "CMakeFiles/llvm-support.dir/StringRef.cpp.o" "CMakeFiles/llvm-support.dir/StringSaver.cpp.o" "CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o" "CMakeFiles/llvm-support.dir/Threading.cpp.o" "CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o" "CMakeFiles/llvm-support.dir/Twine.cpp.o" "CMakeFiles/llvm-support.dir/Unicode.cpp.o" "CMakeFiles/llvm-support.dir/WithColor.cpp.o" "CMakeFiles/llvm-support.dir/YAMLParser.cpp.o" "CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o" "CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o" "CMakeFiles/llvm-support.dir/raw_ostream.cpp.o" "CMakeFiles/llvm-support.dir/regcomp.c.o" "CMakeFiles/llvm-support.dir/regerror.c.o" "CMakeFiles/llvm-support.dir/regexec.c.o" "CMakeFiles/llvm-support.dir/regfree.c.o" "CMakeFiles/llvm-support.dir/regstrlcpy.c.o" /usr/bin/ranlib libllvm-support.a make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target llvm-support In file included from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/graph_core.hpp:15, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/observable_graph.hpp:11, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/assembly_graph/core/graph.hpp:10, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/paired_info/distance_estimation.hpp:13, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/paired_info/weighted_distance_estimation.hpp:11, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/paired_info/smoothing_distance_estimation.hpp:11, from /srv/build/spades-3.15.5+dfsg/assembler/src/common/paired_info/smoothing_distance_estimation.cpp:1: /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp: In member function 'void adt::impl::HybridAllocatedStorage::grow(typename adt::impl::SmallPODVectorData::size_type) [with T = omnigraph::de::RawPointT; unsigned int PreAllocated = 3]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp: In member function 'void adt::impl::HybridAllocatedStorage::grow(typename adt::impl::SmallPODVectorData::size_type) [with T = omnigraph::de::PointT; unsigned int PreAllocated = 3]': /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:316:17: warning: 'void operator delete(void*, std::size_t)' called on a pointer passed to mismatched reallocation function 'void* realloc(void*, size_t)' []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmismatched-dealloc-Wmismatched-dealloc]8;;] 316 | delete v; | ^~~~~~~~ /srv/build/spades-3.15.5+dfsg/assembler/src/common/adt/small_pod_vector.hpp:327:35: note: call to 'void* realloc(void*, size_t)' 327 | new_data = realloc(data, N * sizeof(T)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 43%] Linking CXX static library libpaired_info.a cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/paired_info && /usr/bin/cmake -P CMakeFiles/paired_info.dir/cmake_clean_target.cmake cd /srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu/common/paired_info && /usr/bin/cmake -E cmake_link_script CMakeFiles/paired_info.dir/link.txt --verbose=1 /usr/bin/ar qc libpaired_info.a CMakeFiles/paired_info.dir/distance_estimation.cpp.o CMakeFiles/paired_info.dir/weighted_distance_estimation.cpp.o CMakeFiles/paired_info.dir/smoothing_distance_estimation.cpp.o /usr/bin/ranlib libpaired_info.a make[4]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' [ 43%] Built target paired_info make[3]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' make[2]: *** [Makefile:169: all] Error 2 make[2]: Leaving directory '/srv/build/spades-3.15.5+dfsg/obj-aarch64-linux-gnu' dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" all debruijn_test include_test VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:29: override_dh_auto_build] Error 2 make[1]: Leaving directory '/srv/build/spades-3.15.5+dfsg' make: *** [debian/rules:14: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 Command `dpkg-buildpackage --changes-option=-DDistribution=landing -B -mDebian Med Packaging Team -eDebian Med Packaging Team ` failed. Command debspawn build --no-buildlog --arch=arm64 --results-dir=/var/lib/lkspark/workspaces/e4940d5d-9f51-4e34-96ed-075855175a6e --only=arch --maintainer=Debian Med Packaging Team landing spades_3.15.5+dfsg-2.dsc failed with error code 2